Wall clock time and date at job start Fri Apr 10 2020 17:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48509 * 109.46953 * 95.12750 * 3 2 1 5 5 H 1.48495 * 109.47133 * 215.12287 * 3 2 1 6 6 H 1.48495 * 109.47253 * 335.12534 * 3 2 1 7 7 C 1.38812 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99662 * 32.70182 * 7 2 1 9 9 N 1.36935 * 120.00464 * 212.71083 * 7 2 1 10 10 C 1.46773 * 125.35854 * 355.75571 * 9 7 2 11 11 C 1.53929 * 107.61882 * 178.66685 * 10 9 7 12 12 H 1.08997 * 108.57599 * 101.54457 * 11 10 9 13 13 O 1.40310 * 110.67603 * 221.16790 * 11 10 9 14 14 C 1.41317 * 117.96175 * 67.92947 * 13 11 10 15 15 C 1.51962 * 111.61006 * 57.08157 * 14 13 11 16 16 N 1.44955 * 111.93763 * 319.69612 * 15 14 13 17 17 C 1.34778 * 117.34108 * 203.73020 * 16 15 14 18 18 O 1.21618 * 119.99565 * 16.96215 * 17 16 15 19 19 C 1.47099 * 120.00248 * 196.96617 * 17 16 15 20 20 C 1.32092 * 118.87516 * 244.05618 * 19 17 16 21 21 C 1.50266 * 122.57895 * 180.37108 * 20 19 17 22 22 O 1.42896 * 110.09357 * 344.34769 * 21 20 19 23 23 C 1.43275 * 113.09535 * 50.52968 * 22 21 20 24 24 C 1.50411 * 118.88167 * 63.78478 * 19 17 16 25 25 C 1.44552 * 125.32272 * 23.75610 * 16 15 14 26 26 H 1.08996 * 109.64466 * 105.97104 * 25 16 15 27 27 C 1.46864 * 125.36599 * 176.07011 * 9 7 2 28 28 H 0.97000 * 120.00435 * 174.98739 * 1 2 3 29 29 H 1.08993 * 109.83088 * 298.34647 * 10 9 7 30 30 H 1.09005 * 109.82318 * 59.29607 * 10 9 7 31 31 H 1.09001 * 109.05667 * 296.52989 * 14 13 11 32 32 H 1.08999 * 108.99565 * 177.58966 * 14 13 11 33 33 H 1.09001 * 108.99121 * 199.06242 * 15 14 13 34 34 H 1.08997 * 108.98807 * 80.32796 * 15 14 13 35 35 H 1.07996 * 118.71270 * 0.34391 * 20 19 17 36 36 H 1.08998 * 109.37258 * 104.54120 * 21 20 19 37 37 H 1.08999 * 109.36603 * 224.28711 * 21 20 19 38 38 H 1.09005 * 109.63938 * 50.85798 * 23 22 21 39 39 H 1.09008 * 109.63641 * 171.47283 * 23 22 21 40 40 H 1.09003 * 109.45573 * 283.38231 * 24 19 17 41 41 H 1.08997 * 109.45341 * 43.31016 * 24 19 17 42 42 H 1.09004 * 110.06814 * 317.02783 * 27 9 7 43 43 H 1.08997 * 110.06844 * 78.54899 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6060 1.9838 1.3946 5 1 3.4893 1.4738 -0.8055 6 1 1.3977 2.6815 -0.5889 7 6 2.0102 -1.2021 -0.0005 8 1 1.5986 -2.0631 -0.5063 9 7 3.2167 -1.2965 0.6402 10 6 3.9246 -0.1848 1.2863 11 6 5.2158 -0.7509 1.9041 12 1 6.0514 -0.5036 1.2495 13 8 5.4457 -0.1916 3.1702 14 6 4.5547 -0.5270 4.2146 15 6 4.4855 -2.0297 4.4302 16 7 4.4857 -2.7573 3.1765 17 6 3.9508 -3.9943 3.1786 18 8 3.2276 -4.3425 4.0924 19 6 4.2416 -4.9234 2.0758 20 6 3.2503 -5.3210 1.2986 21 6 3.4516 -6.2740 0.1543 22 8 4.8407 -6.3680 -0.1677 23 6 5.6660 -6.6285 0.9741 24 6 5.6585 -5.3833 1.8679 25 6 5.0134 -2.2644 1.9242 26 1 5.9568 -2.7632 1.7024 27 6 4.0093 -2.5246 0.7837 28 1 -0.4851 -0.8368 -0.0734 29 1 4.1693 0.5774 0.5466 30 1 3.3004 0.2455 2.0695 31 1 3.5599 -0.1570 3.9663 32 1 4.8917 -0.0506 5.1352 33 1 3.5739 -2.2678 4.9783 34 1 5.3455 -2.3430 5.0222 35 1 2.2562 -4.9469 1.4933 36 1 3.0780 -7.2590 0.4341 37 1 2.9042 -5.9138 -0.7166 38 1 5.2705 -7.4820 1.5249 39 1 6.6851 -6.8387 0.6492 40 1 6.2325 -4.5877 1.3929 41 1 6.1059 -5.6276 2.8313 42 1 3.3595 -3.3611 1.0410 43 1 4.5426 -2.7359 -0.1431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083060174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:23 Heat of formation + Delta-G solvation = -42.161313 kcal Electronic energy + Delta-G solvation = -27939.068730 eV Core-core repulsion = 24179.976414 eV Total energy + Delta-G solvation = -3759.092315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24505 -39.44396 -38.40714 -36.40636 -34.82205 -33.91755 -32.46847 -31.32215 -30.55437 -28.41829 -27.91352 -26.17425 -24.21516 -24.10801 -23.46017 -21.53641 -20.57484 -19.32067 -18.26037 -17.73781 -17.43521 -17.01290 -16.40957 -16.22491 -15.65675 -15.32150 -15.13140 -14.95186 -14.69384 -14.17548 -13.94861 -13.86624 -13.46871 -13.17425 -12.94814 -12.82932 -12.68107 -12.53766 -12.04517 -11.84615 -11.61312 -11.50972 -11.16424 -11.05342 -11.00594 -10.60371 -10.33164 -10.13285 -9.86539 -9.63909 -9.47641 -9.19722 -8.85767 -8.45307 -8.32553 -7.11806 -6.44131 -3.18005 1.62501 2.64970 3.06453 3.39249 3.46273 3.63488 3.71910 3.87180 4.38747 4.55086 4.59826 4.64093 4.78559 4.82732 4.90488 5.02572 5.04930 5.13873 5.21464 5.22893 5.29311 5.37824 5.41747 5.46363 5.48320 5.57093 5.60434 5.68240 5.79446 5.84160 5.95822 6.15964 6.27693 6.38002 6.42473 6.48748 6.57045 6.72006 6.94773 7.33575 7.48448 7.65834 8.18088 8.27972 8.97781 9.55638 10.19286 11.07014 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.006529 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.554318 B = 4287.202890 C = 5282.539712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.014 4.014 3 Si 1.059 2.941 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.341 4.341 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.077 3.923 11 C 0.089 3.911 12 H 0.119 0.881 13 O -0.366 6.366 14 C 0.054 3.946 15 C 0.084 3.916 16 N -0.587 5.587 17 C 0.562 3.438 18 O -0.535 6.535 19 C -0.153 4.153 20 C -0.130 4.130 21 C 0.091 3.909 22 O -0.374 6.374 23 C 0.061 3.939 24 C -0.109 4.109 25 C 0.103 3.897 26 H 0.082 0.918 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 -9.788 4.909 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.216 4.216 3 Si 0.893 3.107 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.468 4.468 8 H 0.097 0.903 9 N -0.329 5.329 10 C -0.048 4.048 11 C 0.030 3.970 12 H 0.136 0.864 13 O -0.282 6.282 14 C -0.023 4.023 15 C -0.039 4.039 16 N -0.321 5.321 17 C 0.350 3.650 18 O -0.412 6.412 19 C -0.156 4.156 20 C -0.149 4.149 21 C 0.015 3.985 22 O -0.293 6.293 23 C -0.016 4.016 24 C -0.146 4.146 25 C -0.002 4.002 26 H 0.100 0.900 27 C -0.014 4.014 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.482 -8.123 5.265 16.597 hybrid contribution -0.185 -1.591 0.080 1.604 sum 13.296 -9.714 5.345 17.313 Atomic orbital electron populations 1.70918 1.06007 1.30241 1.47382 1.25614 0.95954 1.00878 0.99153 0.83939 0.74080 0.76391 0.76331 1.22047 1.21956 1.22531 1.19858 0.93234 0.99190 1.34473 0.90288 1.44486 1.21504 1.02060 1.64873 1.22307 0.92453 0.93043 0.96990 1.22375 0.99620 0.90243 0.84807 0.86363 1.86839 1.53596 1.70101 1.17703 1.22345 0.95487 0.93332 0.91098 1.21456 1.03349 0.93270 0.85785 1.46540 1.60801 1.15412 1.09327 1.18521 0.78456 0.81971 0.86008 1.90773 1.34882 1.77294 1.38250 1.20707 0.96712 1.00764 0.97448 1.23392 0.99578 0.96615 0.95329 1.21529 0.83035 0.97149 0.96809 1.88150 1.16973 1.92573 1.31587 1.22669 0.95967 0.95459 0.87459 1.21041 0.92919 0.99492 1.01129 1.21840 0.97735 0.96247 0.84345 0.90003 1.22357 0.92726 0.92375 0.93922 0.92532 0.93911 0.93353 0.92182 0.87405 0.88951 0.91826 0.85422 0.91146 0.86909 0.92519 0.88154 0.89238 0.89921 0.91449 0.94858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.70 55.49 0.76 -27.42 16 2 C -0.01 -0.41 5.43 -17.43 -0.09 -0.51 16 3 Si 1.06 26.75 24.65 -169.99 -4.19 22.56 16 4 H -0.29 -7.08 6.37 56.52 0.36 -6.72 16 5 H -0.29 -6.96 6.44 56.52 0.36 -6.59 16 6 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 7 C -0.34 -9.66 10.39 -15.06 -0.16 -9.82 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 N -0.60 -14.60 3.37 -171.44 -0.58 -15.18 16 10 C 0.08 1.71 4.49 -3.41 -0.02 1.69 16 11 C 0.09 1.53 3.76 -26.39 -0.10 1.43 16 12 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 13 O -0.37 -5.99 10.26 -33.49 -0.34 -6.33 16 14 C 0.05 0.81 6.71 36.63 0.25 1.05 16 15 C 0.08 1.28 6.32 -5.40 -0.03 1.24 16 16 N -0.59 -9.90 3.09 -170.22 -0.53 -10.43 16 17 C 0.56 9.91 5.97 -12.67 -0.08 9.84 16 18 O -0.53 -10.97 16.48 5.26 0.09 -10.88 16 19 C -0.15 -2.26 3.40 -103.09 -0.35 -2.61 16 20 C -0.13 -1.90 7.44 -36.44 -0.27 -2.17 16 21 C 0.09 1.08 7.04 35.80 0.25 1.33 16 22 O -0.37 -4.66 10.83 -35.23 -0.38 -5.04 16 23 C 0.06 0.60 6.89 37.30 0.26 0.86 16 24 C -0.11 -1.21 5.82 -27.88 -0.16 -1.38 16 25 C 0.10 1.71 2.96 -68.51 -0.20 1.51 16 26 H 0.08 1.13 6.20 -51.93 -0.32 0.81 16 27 C 0.11 2.22 5.95 -3.23 -0.02 2.20 16 28 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 29 H 0.04 0.98 4.49 -51.93 -0.23 0.75 16 30 H 0.05 1.17 5.11 -51.93 -0.27 0.90 16 31 H 0.06 1.03 6.79 -51.93 -0.35 0.68 16 32 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.49 7.16 -51.93 -0.37 1.12 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.13 2.11 7.81 -52.49 -0.41 1.70 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.09 0.97 6.31 -51.93 -0.33 0.65 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.36 3.08 -51.93 -0.16 1.20 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -34.53 321.85 -6.95 -41.48 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.90 Total: 1.71 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.73 Total: 4.68 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.34 Total: -53.03 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.64 Total: -22.25 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.19 Total: 22.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.53 -6.95 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083060174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.685 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds