Wall clock time and date at job start Fri Apr 10 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48509 * 109.46953 * 95.12750 * 3 2 1 5 5 H 1.48495 * 109.47133 * 215.12287 * 3 2 1 6 6 H 1.48495 * 109.47253 * 335.12534 * 3 2 1 7 7 C 1.38812 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99662 * 32.70182 * 7 2 1 9 9 N 1.36935 * 120.00464 * 212.71083 * 7 2 1 10 10 C 1.46773 * 125.35854 * 355.75571 * 9 7 2 11 11 C 1.53929 * 107.61882 * 178.66685 * 10 9 7 12 12 H 1.08997 * 108.57599 * 101.54457 * 11 10 9 13 13 O 1.40310 * 110.67603 * 221.16790 * 11 10 9 14 14 C 1.41317 * 117.96175 * 67.92947 * 13 11 10 15 15 C 1.51962 * 111.61006 * 57.08157 * 14 13 11 16 16 N 1.44955 * 111.93763 * 319.69612 * 15 14 13 17 17 C 1.34778 * 117.34108 * 203.73020 * 16 15 14 18 18 O 1.21618 * 119.99565 * 16.96215 * 17 16 15 19 19 C 1.47099 * 120.00248 * 196.96617 * 17 16 15 20 20 C 1.32092 * 118.87516 * 244.05618 * 19 17 16 21 21 C 1.50266 * 122.57895 * 180.37108 * 20 19 17 22 22 O 1.42896 * 110.09357 * 344.34769 * 21 20 19 23 23 C 1.43275 * 113.09535 * 50.52968 * 22 21 20 24 24 C 1.50411 * 118.88167 * 63.78478 * 19 17 16 25 25 C 1.44552 * 125.32272 * 23.75610 * 16 15 14 26 26 H 1.08996 * 109.64466 * 105.97104 * 25 16 15 27 27 C 1.46864 * 125.36599 * 176.07011 * 9 7 2 28 28 H 0.97000 * 120.00435 * 174.98739 * 1 2 3 29 29 H 1.08993 * 109.83088 * 298.34647 * 10 9 7 30 30 H 1.09005 * 109.82318 * 59.29607 * 10 9 7 31 31 H 1.09001 * 109.05667 * 296.52989 * 14 13 11 32 32 H 1.08999 * 108.99565 * 177.58966 * 14 13 11 33 33 H 1.09001 * 108.99121 * 199.06242 * 15 14 13 34 34 H 1.08997 * 108.98807 * 80.32796 * 15 14 13 35 35 H 1.07996 * 118.71270 * 0.34391 * 20 19 17 36 36 H 1.08998 * 109.37258 * 104.54120 * 21 20 19 37 37 H 1.08999 * 109.36603 * 224.28711 * 21 20 19 38 38 H 1.09005 * 109.63938 * 50.85798 * 23 22 21 39 39 H 1.09008 * 109.63641 * 171.47283 * 23 22 21 40 40 H 1.09003 * 109.45573 * 283.38231 * 24 19 17 41 41 H 1.08997 * 109.45341 * 43.31016 * 24 19 17 42 42 H 1.09004 * 110.06814 * 317.02783 * 27 9 7 43 43 H 1.08997 * 110.06844 * 78.54899 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6060 1.9838 1.3946 5 1 3.4893 1.4738 -0.8055 6 1 1.3977 2.6815 -0.5889 7 6 2.0102 -1.2021 -0.0005 8 1 1.5986 -2.0631 -0.5063 9 7 3.2167 -1.2965 0.6402 10 6 3.9246 -0.1848 1.2863 11 6 5.2158 -0.7509 1.9041 12 1 6.0514 -0.5036 1.2495 13 8 5.4457 -0.1916 3.1702 14 6 4.5547 -0.5270 4.2146 15 6 4.4855 -2.0297 4.4302 16 7 4.4857 -2.7573 3.1765 17 6 3.9508 -3.9943 3.1786 18 8 3.2276 -4.3425 4.0924 19 6 4.2416 -4.9234 2.0758 20 6 3.2503 -5.3210 1.2986 21 6 3.4516 -6.2740 0.1543 22 8 4.8407 -6.3680 -0.1677 23 6 5.6660 -6.6285 0.9741 24 6 5.6585 -5.3833 1.8679 25 6 5.0134 -2.2644 1.9242 26 1 5.9568 -2.7632 1.7024 27 6 4.0093 -2.5246 0.7837 28 1 -0.4851 -0.8368 -0.0734 29 1 4.1693 0.5774 0.5466 30 1 3.3004 0.2455 2.0695 31 1 3.5599 -0.1570 3.9663 32 1 4.8917 -0.0506 5.1352 33 1 3.5739 -2.2678 4.9783 34 1 5.3455 -2.3430 5.0222 35 1 2.2562 -4.9469 1.4933 36 1 3.0780 -7.2590 0.4341 37 1 2.9042 -5.9138 -0.7166 38 1 5.2705 -7.4820 1.5249 39 1 6.6851 -6.8387 0.6492 40 1 6.2325 -4.5877 1.3929 41 1 6.1059 -5.6276 2.8313 42 1 3.3595 -3.3611 1.0410 43 1 4.5426 -2.7359 -0.1431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083060174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:22 Heat of formation + Delta-G solvation = -69.406210 kcal Electronic energy + Delta-G solvation = -27940.250157 eV Core-core repulsion = 24179.976414 eV Total energy + Delta-G solvation = -3760.273743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.57426 -40.58131 -39.64206 -37.96285 -36.30994 -35.05007 -34.41056 -32.29078 -32.09253 -29.93032 -29.45086 -27.34317 -25.88098 -25.25184 -24.67096 -22.97203 -22.24034 -20.66249 -19.62642 -19.43255 -18.71573 -18.45826 -17.62395 -17.34532 -17.19743 -16.47678 -16.27181 -16.17213 -15.99160 -15.79530 -15.46840 -15.12742 -15.00191 -14.76870 -14.53960 -14.05235 -13.90349 -13.65369 -13.45253 -13.35258 -13.07443 -12.92857 -12.62515 -12.53892 -12.22141 -12.04687 -11.80163 -11.69295 -11.44843 -11.27046 -10.87259 -10.59478 -10.53873 -9.99902 -9.74569 -9.15027 -8.76630 -5.41768 0.45834 1.30789 1.34540 1.43994 1.62620 1.81146 2.46157 2.58619 2.86155 2.90615 3.18777 3.29013 3.40065 3.48896 3.64077 3.74797 3.86774 3.90926 3.98253 4.10644 4.16657 4.22719 4.35524 4.37799 4.41481 4.45283 4.56636 4.62674 4.67874 4.70953 4.75244 4.80084 4.85597 4.93584 4.99101 5.14643 5.37809 5.43662 5.53090 5.98439 6.03994 6.09659 6.19034 6.76334 6.83508 7.43892 8.05409 8.75879 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.006529 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.554318 B = 4287.202890 C = 5282.539712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.072 4.072 3 Si 1.101 2.899 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.304 1.304 7 C -0.328 4.328 8 H 0.050 0.950 9 N -0.620 5.620 10 C 0.070 3.930 11 C 0.097 3.903 12 H 0.157 0.843 13 O -0.358 6.358 14 C 0.055 3.945 15 C 0.080 3.920 16 N -0.591 5.591 17 C 0.553 3.447 18 O -0.575 6.575 19 C -0.155 4.155 20 C -0.140 4.140 21 C 0.097 3.903 22 O -0.387 6.387 23 C 0.059 3.941 24 C -0.105 4.105 25 C 0.112 3.888 26 H 0.127 0.873 27 C 0.106 3.894 28 H 0.249 0.751 29 H 0.043 0.957 30 H 0.022 0.978 31 H 0.027 0.973 32 H 0.150 0.850 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.223 -10.116 5.296 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.267 4.267 3 Si 0.928 3.072 4 H -0.206 1.206 5 H -0.191 1.191 6 H -0.232 1.232 7 C -0.456 4.456 8 H 0.068 0.932 9 N -0.349 5.349 10 C -0.056 4.056 11 C 0.038 3.962 12 H 0.174 0.826 13 O -0.275 6.275 14 C -0.022 4.022 15 C -0.042 4.042 16 N -0.324 5.324 17 C 0.343 3.657 18 O -0.456 6.456 19 C -0.158 4.158 20 C -0.160 4.160 21 C 0.021 3.979 22 O -0.306 6.306 23 C -0.017 4.017 24 C -0.142 4.142 25 C 0.007 3.993 26 H 0.145 0.855 27 C -0.019 4.019 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.168 0.832 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.847 -8.470 5.655 20.548 hybrid contribution -1.595 -1.583 0.008 2.247 sum 16.252 -10.053 5.663 19.932 Atomic orbital electron populations 1.71038 1.07215 1.29333 1.50960 1.26849 0.95979 1.04327 0.99545 0.83411 0.73796 0.72588 0.77358 1.20601 1.19136 1.23216 1.19763 0.94934 0.97917 1.33021 0.93223 1.44513 1.21209 1.04762 1.64412 1.22452 0.94273 0.92626 0.96209 1.22464 0.98095 0.90047 0.85643 0.82591 1.86876 1.53223 1.70058 1.17321 1.22510 0.94021 0.93343 0.92312 1.21605 1.03871 0.93350 0.85407 1.46724 1.60403 1.15283 1.09988 1.19102 0.77719 0.82610 0.86244 1.90748 1.36620 1.78117 1.40070 1.20905 0.98839 0.99963 0.96097 1.23428 0.98134 0.97569 0.96845 1.21509 0.83540 0.97375 0.95456 1.88135 1.16891 1.92637 1.32940 1.22923 0.97125 0.95021 0.86674 1.21165 0.90129 1.00372 1.02503 1.21902 0.98138 0.96431 0.82821 0.85532 1.22582 0.93099 0.90299 0.95965 0.94159 0.93914 0.96014 0.95493 0.83230 0.90882 0.88521 0.88900 0.88891 0.87163 0.91534 0.85129 0.88181 0.88215 0.92330 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.32 13.70 21.65 0.30 -61.02 16 2 C -0.07 -4.33 5.43 84.86 0.46 -3.86 16 3 Si 1.10 54.49 24.65 68.60 1.69 56.18 16 4 H -0.28 -13.09 6.37 99.48 0.63 -12.46 16 5 H -0.27 -11.86 6.44 99.48 0.64 -11.22 16 6 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 7 C -0.33 -19.19 10.39 84.03 0.87 -18.32 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.62 -30.08 3.37 -696.30 -2.35 -32.42 16 10 C 0.07 2.95 4.49 86.64 0.39 3.34 16 11 C 0.10 2.98 3.76 30.81 0.12 3.10 16 12 H 0.16 3.72 8.14 -2.39 -0.02 3.71 16 13 O -0.36 -10.35 10.26 -142.75 -1.46 -11.82 16 14 C 0.05 1.50 6.71 71.64 0.48 1.98 16 15 C 0.08 2.27 6.32 86.33 0.55 2.82 16 16 N -0.59 -18.82 3.09 -810.70 -2.50 -21.32 16 17 C 0.55 19.19 5.97 86.57 0.52 19.71 16 18 O -0.58 -24.07 16.48 -4.09 -0.07 -24.14 16 19 C -0.16 -4.37 3.40 -18.59 -0.06 -4.43 16 20 C -0.14 -4.14 7.44 24.59 0.18 -3.96 16 21 C 0.10 2.23 7.04 71.10 0.50 2.73 16 22 O -0.39 -8.62 10.83 -148.98 -1.61 -10.23 16 23 C 0.06 0.93 6.89 72.08 0.50 1.43 16 24 C -0.10 -1.96 5.82 29.85 0.17 -1.78 16 25 C 0.11 3.33 2.96 45.65 0.13 3.46 16 26 H 0.13 2.78 6.20 -2.39 -0.01 2.76 16 27 C 0.11 4.04 5.95 86.71 0.52 4.55 16 28 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 29 H 0.04 1.84 4.49 -2.39 -0.01 1.83 16 30 H 0.02 1.05 5.11 -2.38 -0.01 1.04 16 31 H 0.03 0.92 6.79 -2.39 -0.02 0.90 16 32 H 0.15 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.07 2.36 7.16 -2.39 -0.02 2.35 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 3.34 7.81 -2.91 -0.02 3.31 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.07 0.94 8.09 -2.38 -0.02 0.93 16 39 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.10 1.67 6.31 -2.39 -0.02 1.66 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 2.38 3.08 -2.38 -0.01 2.37 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -79.26 321.85 0.17 -79.09 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.86 Total: 14.91 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.32 Total: 10.76 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.55 Total: -114.77 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -3.14 Total: -46.18 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 1.69 Total: 56.18 kcal Total: -79.26 0.17 -79.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083060174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.682 kcal (2) G-P(sol) polarization free energy of solvation -79.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds