Wall clock time and date at job start Fri Apr 10 2020 17:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00243 * 2 1 4 4 H 1.48505 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47187 * 300.00028 * 3 2 1 6 6 H 1.48503 * 109.46872 * 60.00249 * 3 2 1 7 7 C 1.38818 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99443 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.36480 * 0.02974 * 9 7 2 11 11 C 1.53909 * 107.62865 * 178.82825 * 10 9 7 12 12 H 1.08998 * 109.52508 * 100.77115 * 11 10 9 13 13 O 1.40854 * 110.30263 * 221.40815 * 11 10 9 14 14 C 1.41330 * 118.30849 * 68.00333 * 13 11 10 15 15 C 1.51963 * 111.60091 * 56.89861 * 14 13 11 16 16 N 1.44962 * 111.94467 * 319.69121 * 15 14 13 17 17 C 1.34766 * 117.34079 * 203.73600 * 16 15 14 18 18 O 1.21284 * 120.00222 * 186.17229 * 17 16 15 19 19 C 1.50698 * 120.00525 * 6.16576 * 17 16 15 20 20 C 1.55602 * 120.88287 * 261.49253 * 19 17 16 21 21 C 1.53004 * 60.08225 * 248.32924 * 20 19 17 22 22 H 1.08993 * 119.80782 * 112.73290 * 21 20 19 23 23 C 1.54482 * 118.06657 * 269.00423 * 21 20 19 24 24 O 1.44420 * 104.80526 * 88.09169 * 23 21 20 25 25 C 1.44426 * 105.27640 * 319.49228 * 24 23 21 26 26 C 1.44545 * 125.31820 * 24.01847 * 16 15 14 27 27 H 1.09003 * 109.64346 * 106.18497 * 26 16 15 28 28 C 1.46878 * 125.36444 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99979 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.82250 * 59.30081 * 10 9 7 31 31 H 1.08998 * 109.89293 * 298.39088 * 10 9 7 32 32 H 1.08997 * 109.05475 * 296.35276 * 14 13 11 33 33 H 1.08995 * 108.99474 * 177.40514 * 14 13 11 34 34 H 1.09010 * 108.98532 * 199.05735 * 15 14 13 35 35 H 1.09003 * 108.92119 * 80.28653 * 15 14 13 36 36 H 1.09003 * 117.25096 * 140.77984 * 20 19 17 37 37 H 1.08998 * 117.95617 * 355.56744 * 20 19 17 38 38 H 1.08991 * 110.36971 * 206.92611 * 23 21 20 39 39 H 1.09006 * 110.36842 * 329.15303 * 23 21 20 40 40 H 1.09000 * 110.37162 * 159.34441 * 25 24 23 41 41 H 1.08996 * 110.37159 * 281.56672 * 25 24 23 42 42 H 1.08992 * 110.06633 * 317.02063 * 28 9 7 43 43 H 1.08998 * 110.06444 * 78.48487 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1359 -2.5252 -0.0006 11 6 -0.4629 -4.0289 -0.0306 12 1 -0.7260 -4.3645 0.9725 13 8 -1.5365 -4.2782 -0.9076 14 6 -1.3292 -4.0863 -2.2924 15 6 -0.1713 -4.9257 -2.8063 16 7 0.9383 -4.9468 -1.8736 17 6 2.1615 -5.2129 -2.3728 18 8 3.1048 -5.3535 -1.6236 19 6 2.3573 -5.3359 -3.8620 20 6 2.4019 -6.7312 -4.5491 21 6 3.6665 -5.8725 -4.4827 22 1 4.5104 -6.1971 -3.8741 23 6 3.9508 -4.9055 -5.6534 24 8 3.2641 -3.6854 -5.2993 25 6 2.0054 -4.1082 -4.7312 26 6 0.8387 -4.7115 -0.4509 27 1 0.9519 -5.6538 0.0852 28 6 1.9377 -3.7232 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5528 -2.0386 -0.8824 31 1 -0.5508 -2.0747 0.9010 32 1 -1.1154 -3.0337 -2.4777 33 1 -2.2361 -4.3648 -2.8288 34 1 0.1713 -4.5139 -3.7557 35 1 -0.5187 -5.9462 -2.9674 36 1 1.9100 -6.8268 -5.5172 37 1 2.3614 -7.6155 -3.9132 38 1 5.0218 -4.7253 -5.7451 39 1 3.5536 -5.3099 -6.5845 40 1 1.5821 -3.3154 -4.1145 41 1 1.3076 -4.3875 -5.5205 42 1 2.7744 -3.7509 -0.6985 43 1 2.2793 -3.9779 1.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083088160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:25 Heat of formation + Delta-G solvation = -25.280871 kcal Electronic energy + Delta-G solvation = -27747.649149 eV Core-core repulsion = 23989.288824 eV Total energy + Delta-G solvation = -3758.360324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25080 -39.88845 -38.06338 -35.88686 -34.85579 -34.61919 -32.38390 -30.04423 -29.18072 -27.97873 -27.33346 -25.64062 -24.76378 -23.27859 -23.07996 -21.41441 -20.51007 -19.44884 -18.47487 -17.51475 -16.99588 -16.65833 -16.29680 -15.75002 -15.35347 -15.17326 -14.86400 -14.77568 -14.53837 -14.22824 -13.93382 -13.51755 -13.41470 -12.81292 -12.71929 -12.53780 -12.12229 -11.97570 -11.82003 -11.52434 -11.34587 -11.07866 -10.95047 -10.79270 -10.64041 -10.62369 -10.37770 -10.23614 -10.05342 -9.82139 -9.71658 -9.39255 -8.96083 -8.60217 -8.23947 -6.80903 -5.70526 -3.03870 2.57354 2.99250 3.20068 3.41605 3.47733 3.50468 3.84235 4.09604 4.17450 4.32596 4.41123 4.52408 4.79158 4.81903 4.88349 5.09021 5.11502 5.16746 5.30050 5.33674 5.42338 5.44098 5.50989 5.53333 5.59875 5.65067 5.69374 5.72427 5.84013 5.91104 5.98753 6.06811 6.28515 6.50143 6.58796 6.80121 7.10096 7.39347 7.46330 7.54132 7.74380 7.88971 8.25288 8.35601 9.23288 9.83146 10.46098 11.40969 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005928 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.312856 B = 4721.912961 C = 5744.545489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.110 0.890 13 O -0.370 6.370 14 C 0.057 3.943 15 C 0.076 3.924 16 N -0.578 5.578 17 C 0.558 3.442 18 O -0.523 6.523 19 C -0.207 4.207 20 C -0.111 4.111 21 C -0.157 4.157 22 H 0.130 0.870 23 C 0.071 3.929 24 O -0.363 6.363 25 C 0.086 3.914 26 C 0.110 3.890 27 H 0.073 0.927 28 C 0.119 3.881 29 H 0.251 0.749 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -14.494 -11.386 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.128 0.872 13 O -0.287 6.287 14 C -0.021 4.021 15 C -0.048 4.048 16 N -0.311 5.311 17 C 0.345 3.655 18 O -0.399 6.399 19 C -0.210 4.210 20 C -0.148 4.148 21 C -0.176 4.176 22 H 0.148 0.852 23 C -0.005 4.005 24 O -0.281 6.281 25 C 0.009 3.991 26 C 0.005 3.995 27 H 0.091 0.909 28 C -0.008 4.008 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.329 -14.144 -10.904 17.862 hybrid contribution 0.550 0.804 0.032 0.975 sum 0.221 -13.340 -10.872 17.210 Atomic orbital electron populations 1.69956 1.04811 1.24892 1.57599 1.24778 0.95739 0.97622 1.02326 0.86036 0.78848 0.83708 0.77199 1.20473 1.21774 1.21730 1.19107 0.90517 0.82175 1.43200 0.90364 1.44226 1.01123 1.00169 1.87373 1.21670 0.85173 0.88041 1.02328 1.23000 0.84665 0.98610 0.92705 0.87191 1.86870 1.37192 1.88989 1.15649 1.22247 0.97245 0.99718 0.82841 1.21750 0.88651 1.01127 0.93227 1.46513 1.07070 1.69712 1.07818 1.19013 0.82573 0.76480 0.87453 1.90659 1.40728 1.49122 1.59410 1.23704 1.06464 0.96735 0.94111 1.23561 0.98451 0.91549 1.01253 1.24323 0.92412 1.01284 0.99590 0.85226 1.22969 0.98840 0.83922 0.94804 1.89271 1.30355 1.27659 1.80854 1.22940 0.86939 0.94431 0.94751 1.21834 0.98932 0.98933 0.79764 0.90901 1.21941 0.95184 0.84775 0.98867 0.93821 0.92593 0.92978 0.91965 0.87926 0.89755 0.91766 0.87703 0.87355 0.88272 0.91727 0.87707 0.91132 0.91091 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.26 55.49 0.57 -26.71 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.22 -6.39 10.25 -15.06 -0.15 -6.55 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.80 3.39 -171.22 -0.58 -16.38 16 10 C 0.15 3.73 5.02 -3.42 -0.02 3.71 16 11 C 0.07 1.34 3.82 -26.33 -0.10 1.23 16 12 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 13 O -0.37 -6.52 10.24 -34.46 -0.35 -6.87 16 14 C 0.06 0.83 6.72 36.63 0.25 1.08 16 15 C 0.08 1.01 5.96 -5.39 -0.03 0.98 16 16 N -0.58 -9.79 3.08 -168.52 -0.52 -10.31 16 17 C 0.56 9.68 6.53 -10.99 -0.07 9.61 16 18 O -0.52 -10.78 14.21 5.55 0.08 -10.70 16 19 C -0.21 -2.75 1.86 -152.71 -0.28 -3.03 16 20 C -0.11 -1.03 10.08 -25.34 -0.26 -1.28 16 21 C -0.16 -1.80 6.83 -89.05 -0.61 -2.41 16 22 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 23 C 0.07 0.77 7.43 37.94 0.28 1.05 16 24 O -0.36 -5.39 11.65 -35.23 -0.41 -5.80 16 25 C 0.09 1.14 5.35 37.93 0.20 1.34 16 26 C 0.11 2.08 3.38 -68.25 -0.23 1.85 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 C 0.12 2.71 6.29 -3.04 -0.02 2.70 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.06 1.50 5.74 -51.93 -0.30 1.20 16 31 H 0.05 1.41 7.48 -51.93 -0.39 1.02 16 32 H 0.06 1.06 6.81 -51.93 -0.35 0.71 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.99 4.21 -51.92 -0.22 0.77 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 1.63 7.30 -51.93 -0.38 1.25 16 41 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 42 H 0.07 1.76 5.13 -51.93 -0.27 1.50 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -34.19 330.99 -8.48 -42.68 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.09 Total: 1.46 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -1.14 Total: 9.93 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.53 Total: -53.39 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.68 Total: -23.38 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.19 -8.48 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083088160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.395 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds