Wall clock time and date at job start Fri Apr 10 2020 17:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00243 * 2 1 4 4 H 1.48505 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47187 * 300.00028 * 3 2 1 6 6 H 1.48503 * 109.46872 * 60.00249 * 3 2 1 7 7 C 1.38818 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99443 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.36480 * 0.02974 * 9 7 2 11 11 C 1.53909 * 107.62865 * 178.82825 * 10 9 7 12 12 H 1.08998 * 109.52508 * 100.77115 * 11 10 9 13 13 O 1.40854 * 110.30263 * 221.40815 * 11 10 9 14 14 C 1.41330 * 118.30849 * 68.00333 * 13 11 10 15 15 C 1.51963 * 111.60091 * 56.89861 * 14 13 11 16 16 N 1.44962 * 111.94467 * 319.69121 * 15 14 13 17 17 C 1.34766 * 117.34079 * 203.73600 * 16 15 14 18 18 O 1.21284 * 120.00222 * 186.17229 * 17 16 15 19 19 C 1.50698 * 120.00525 * 6.16576 * 17 16 15 20 20 C 1.55602 * 120.88287 * 261.49253 * 19 17 16 21 21 C 1.53004 * 60.08225 * 248.32924 * 20 19 17 22 22 H 1.08993 * 119.80782 * 112.73290 * 21 20 19 23 23 C 1.54482 * 118.06657 * 269.00423 * 21 20 19 24 24 O 1.44420 * 104.80526 * 88.09169 * 23 21 20 25 25 C 1.44426 * 105.27640 * 319.49228 * 24 23 21 26 26 C 1.44545 * 125.31820 * 24.01847 * 16 15 14 27 27 H 1.09003 * 109.64346 * 106.18497 * 26 16 15 28 28 C 1.46878 * 125.36444 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99979 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.82250 * 59.30081 * 10 9 7 31 31 H 1.08998 * 109.89293 * 298.39088 * 10 9 7 32 32 H 1.08997 * 109.05475 * 296.35276 * 14 13 11 33 33 H 1.08995 * 108.99474 * 177.40514 * 14 13 11 34 34 H 1.09010 * 108.98532 * 199.05735 * 15 14 13 35 35 H 1.09003 * 108.92119 * 80.28653 * 15 14 13 36 36 H 1.09003 * 117.25096 * 140.77984 * 20 19 17 37 37 H 1.08998 * 117.95617 * 355.56744 * 20 19 17 38 38 H 1.08991 * 110.36971 * 206.92611 * 23 21 20 39 39 H 1.09006 * 110.36842 * 329.15303 * 23 21 20 40 40 H 1.09000 * 110.37162 * 159.34441 * 25 24 23 41 41 H 1.08996 * 110.37159 * 281.56672 * 25 24 23 42 42 H 1.08992 * 110.06633 * 317.02063 * 28 9 7 43 43 H 1.08998 * 110.06444 * 78.48487 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1359 -2.5252 -0.0006 11 6 -0.4629 -4.0289 -0.0306 12 1 -0.7260 -4.3645 0.9725 13 8 -1.5365 -4.2782 -0.9076 14 6 -1.3292 -4.0863 -2.2924 15 6 -0.1713 -4.9257 -2.8063 16 7 0.9383 -4.9468 -1.8736 17 6 2.1615 -5.2129 -2.3728 18 8 3.1048 -5.3535 -1.6236 19 6 2.3573 -5.3359 -3.8620 20 6 2.4019 -6.7312 -4.5491 21 6 3.6665 -5.8725 -4.4827 22 1 4.5104 -6.1971 -3.8741 23 6 3.9508 -4.9055 -5.6534 24 8 3.2641 -3.6854 -5.2993 25 6 2.0054 -4.1082 -4.7312 26 6 0.8387 -4.7115 -0.4509 27 1 0.9519 -5.6538 0.0852 28 6 1.9377 -3.7232 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5528 -2.0386 -0.8824 31 1 -0.5508 -2.0747 0.9010 32 1 -1.1154 -3.0337 -2.4777 33 1 -2.2361 -4.3648 -2.8288 34 1 0.1713 -4.5139 -3.7557 35 1 -0.5187 -5.9462 -2.9674 36 1 1.9100 -6.8268 -5.5172 37 1 2.3614 -7.6155 -3.9132 38 1 5.0218 -4.7253 -5.7451 39 1 3.5536 -5.3099 -6.5845 40 1 1.5821 -3.3154 -4.1145 41 1 1.3076 -4.3875 -5.5205 42 1 2.7744 -3.7509 -0.6985 43 1 2.2793 -3.9779 1.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083088160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:25 Heat of formation + Delta-G solvation = -50.898374 kcal Electronic energy + Delta-G solvation = -27748.760007 eV Core-core repulsion = 23989.288824 eV Total energy + Delta-G solvation = -3759.471183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47802 -41.08926 -39.41592 -37.64790 -36.21880 -35.62349 -34.33254 -31.77296 -30.20162 -29.61972 -28.94288 -26.71148 -26.47157 -24.67068 -24.40226 -22.60972 -21.92155 -20.88382 -19.81460 -19.13121 -18.38348 -18.28354 -17.52219 -16.97242 -16.76661 -16.54826 -16.25501 -16.08531 -15.84662 -15.67207 -15.32301 -15.23059 -14.39040 -14.32130 -14.12592 -13.90588 -13.70854 -13.41327 -13.06762 -12.98443 -12.96079 -12.86075 -12.49147 -12.25954 -12.16755 -12.13287 -11.89751 -11.76209 -11.60133 -11.23713 -10.94557 -10.80198 -10.65866 -10.38919 -9.61043 -8.96527 -7.92838 -5.29259 1.35589 1.39437 1.40177 1.51143 1.75621 2.26412 2.41678 2.70923 2.96596 3.21873 3.25530 3.31607 3.43449 3.56450 3.65337 3.71691 3.87433 3.96369 4.00540 4.06547 4.19085 4.31768 4.35783 4.41650 4.50223 4.51690 4.57907 4.69233 4.70414 4.75837 4.83715 4.89144 4.94538 4.96825 5.10847 5.34466 5.43656 5.56121 5.60633 5.69767 6.11188 6.18228 6.38554 7.01810 7.05743 7.67740 8.29454 9.16429 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005928 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.312856 B = 4721.912961 C = 5744.545489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.618 5.618 10 C 0.165 3.835 11 C 0.086 3.914 12 H 0.129 0.871 13 O -0.370 6.370 14 C 0.050 3.950 15 C 0.073 3.927 16 N -0.584 5.584 17 C 0.548 3.452 18 O -0.569 6.569 19 C -0.232 4.232 20 C -0.064 4.064 21 C -0.165 4.165 22 H 0.114 0.886 23 C 0.070 3.930 24 O -0.402 6.402 25 C 0.090 3.910 26 C 0.121 3.879 27 H 0.093 0.907 28 C 0.118 3.882 29 H 0.250 0.750 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.027 0.973 33 H 0.150 0.850 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -16.704 -13.827 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.250 4.250 3 Si 0.805 3.195 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.345 5.345 10 C 0.039 3.961 11 C 0.027 3.973 12 H 0.147 0.853 13 O -0.287 6.287 14 C -0.026 4.026 15 C -0.048 4.048 16 N -0.316 5.316 17 C 0.337 3.663 18 O -0.449 6.449 19 C -0.236 4.236 20 C -0.101 4.101 21 C -0.184 4.184 22 H 0.132 0.868 23 C -0.006 4.006 24 O -0.321 6.321 25 C 0.014 3.986 26 C 0.016 3.984 27 H 0.111 0.889 28 C -0.008 4.008 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.167 0.833 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.068 0.932 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.209 -16.382 -13.369 21.179 hybrid contribution 0.866 1.507 0.777 1.904 sum -0.343 -14.875 -12.593 19.493 Atomic orbital electron populations 1.70160 1.05966 1.25393 1.57863 1.25573 0.96689 1.00662 1.02075 0.85045 0.77870 0.79466 0.77165 1.19836 1.21380 1.21154 1.19330 0.90519 0.83811 1.43767 0.91336 1.44438 1.02152 1.00765 1.87156 1.21424 0.83875 0.91634 0.99127 1.22712 0.85509 0.94652 0.94453 0.85347 1.86879 1.36284 1.88474 1.17054 1.22572 1.00147 0.98295 0.81632 1.22030 0.86864 1.03130 0.92823 1.46669 1.08387 1.69276 1.07304 1.19794 0.81885 0.75262 0.89318 1.90624 1.41987 1.51225 1.61068 1.23622 1.09079 0.99497 0.91391 1.23790 0.95238 0.88930 1.02130 1.24430 0.92240 1.02302 0.99411 0.86832 1.23201 0.99160 0.82437 0.95774 1.89228 1.31471 1.30182 1.81220 1.22929 0.87145 0.93112 0.95406 1.21581 0.96642 0.98314 0.81850 0.88945 1.21966 0.96064 0.84556 0.98213 0.94094 0.95559 0.96559 0.95442 0.83268 0.88065 0.87819 0.83606 0.86562 0.87932 0.88016 0.91511 0.86804 0.93228 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.91 10.26 21.65 0.22 -57.69 16 2 C -0.06 -3.36 5.48 84.86 0.47 -2.89 16 3 Si 0.98 48.02 29.55 68.60 2.03 50.05 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -14.83 10.25 84.04 0.86 -13.97 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.62 -34.13 3.39 -695.62 -2.36 -36.48 16 10 C 0.16 8.41 5.02 86.63 0.43 8.84 16 11 C 0.09 3.33 3.82 30.86 0.12 3.45 16 12 H 0.13 4.47 8.14 -2.39 -0.02 4.45 16 13 O -0.37 -12.54 10.24 -146.21 -1.50 -14.04 16 14 C 0.05 1.37 6.72 71.64 0.48 1.86 16 15 C 0.07 1.76 5.96 86.33 0.51 2.27 16 16 N -0.58 -19.26 3.08 -805.47 -2.48 -21.75 16 17 C 0.55 18.86 6.53 87.66 0.57 19.43 16 18 O -0.57 -24.17 14.21 -3.04 -0.04 -24.21 16 19 C -0.23 -5.70 1.86 -51.01 -0.10 -5.80 16 20 C -0.06 -0.89 10.08 31.49 0.32 -0.57 16 21 C -0.16 -3.42 6.83 -9.77 -0.07 -3.48 16 22 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 23 C 0.07 1.33 7.43 72.49 0.54 1.87 16 24 O -0.40 -11.53 11.65 -148.98 -1.74 -13.27 16 25 C 0.09 2.24 5.35 72.48 0.39 2.63 16 26 C 0.12 4.61 3.38 45.83 0.15 4.76 16 27 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 28 C 0.12 5.64 6.29 86.82 0.55 6.18 16 29 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.03 1.48 5.74 -2.39 -0.01 1.47 16 31 H 0.02 0.93 7.48 -2.39 -0.02 0.91 16 32 H 0.03 0.95 6.81 -2.39 -0.02 0.93 16 33 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.10 2.10 4.21 -2.38 -0.01 2.09 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 2.12 7.30 -2.39 -0.02 2.10 16 41 H 0.11 1.77 8.03 -2.39 -0.02 1.75 16 42 H 0.05 2.61 5.13 -2.39 -0.01 2.60 16 43 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -80.71 330.99 0.39 -80.32 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.03 Total: 12.49 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 5.23 Total: 24.58 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -4.62 Total: -115.92 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -3.28 Total: -51.52 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -80.71 0.39 -80.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083088160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.421 kcal (2) G-P(sol) polarization free energy of solvation -80.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds