Wall clock time and date at job start Fri Apr 10 2020 17:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48495 * 109.47287 * 239.99589 * 3 2 1 5 5 H 1.48500 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46832 * 119.99888 * 3 2 1 7 7 C 1.38812 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99719 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.47064 * 125.64131 * 0.03255 * 9 7 2 11 11 C 1.54905 * 107.20332 * 180.21599 * 10 9 7 12 12 H 1.08999 * 112.56644 * 143.26388 * 11 10 9 13 13 O 1.42780 * 107.17314 * 266.67344 * 11 10 9 14 14 C 1.42615 * 115.83959 * 166.91586 * 13 11 10 15 15 C 1.53577 * 108.29337 * 295.39728 * 14 13 11 16 16 N 1.47041 * 107.23053 * 55.94347 * 15 14 13 17 17 C 1.34783 * 120.03710 * 130.33251 * 16 15 14 18 18 O 1.21283 * 119.99785 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00102 * 0.02562 * 17 16 15 20 20 H 1.09002 * 115.50642 * 325.36159 * 19 17 16 21 21 C 1.52996 * 117.43694 * 110.64798 * 19 17 16 22 22 H 1.09004 * 119.80740 * 355.36778 * 21 19 17 23 23 C 1.54476 * 118.06738 * 198.08503 * 21 19 17 24 24 O 1.44425 * 104.80507 * 273.17117 * 23 21 19 25 25 C 1.44427 * 105.27256 * 40.50958 * 24 23 21 26 26 C 1.53003 * 117.43316 * 179.97438 * 19 17 16 27 27 H 1.08997 * 119.80601 * 5.65060 * 26 19 17 28 28 C 1.45522 * 119.92837 * 310.35649 * 16 15 14 29 29 H 1.08997 * 110.84935 * 165.96819 * 28 16 15 30 30 C 1.47610 * 125.64794 * 179.97438 * 9 7 2 31 31 H 0.96997 * 119.99813 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.89978 * 60.81734 * 10 9 7 33 33 H 1.09006 * 109.89404 * 299.60980 * 10 9 7 34 34 H 1.09002 * 109.69785 * 175.70409 * 14 13 11 35 35 H 1.08994 * 109.70379 * 55.10067 * 14 13 11 36 36 H 1.09004 * 109.90370 * 175.37233 * 15 14 13 37 37 H 1.08991 * 109.90890 * 296.51272 * 15 14 13 38 38 H 1.08999 * 110.37542 * 154.33878 * 23 21 19 39 39 H 1.09003 * 110.46898 * 32.05286 * 23 21 19 40 40 H 1.09003 * 110.37233 * 200.65347 * 25 24 23 41 41 H 1.09001 * 110.37262 * 78.32323 * 25 24 23 42 42 H 1.09005 * 110.41643 * 37.72896 * 30 9 7 43 43 H 1.09000 * 110.42581 * 275.26617 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1379 -2.5326 -0.0007 11 6 -0.4484 -4.0502 0.0050 12 1 -1.3228 -4.2960 0.6075 13 8 -0.6098 -4.4525 -1.3554 14 6 -0.6145 -5.8590 -1.5913 15 6 0.7686 -6.4145 -1.2209 16 7 1.0329 -6.0307 0.1738 17 6 1.4460 -6.9568 1.0617 18 8 1.6642 -6.6393 2.2117 19 6 1.6378 -8.3864 0.6252 20 1 0.9386 -8.7443 -0.1305 21 6 3.0707 -8.9194 0.5671 22 1 3.9069 -8.2482 0.7629 23 6 3.3382 -10.1963 -0.2602 24 8 3.0820 -11.2870 0.6511 25 6 1.9083 -10.8934 1.3950 26 6 2.1089 -9.3885 1.6810 27 1 2.2026 -9.0760 2.7210 28 6 0.8474 -4.6500 0.5944 29 1 0.8404 -4.5733 1.6817 30 6 1.9342 -3.7328 -0.0016 31 1 -0.4850 0.8400 0.0004 32 1 -0.5562 -2.0718 -0.8955 33 1 -0.5570 -2.0650 0.8904 34 1 -0.8188 -6.0544 -2.6440 35 1 -1.3779 -6.3326 -0.9742 36 1 0.7692 -7.5006 -1.3133 37 1 1.5281 -5.9852 -1.8741 38 1 4.3742 -10.2195 -0.5981 39 1 2.6608 -10.2470 -1.1127 40 1 1.8458 -11.4523 2.3289 41 1 1.0102 -11.0500 0.7975 42 1 2.8276 -3.7463 0.6228 43 1 2.1757 -4.0402 -1.0191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083169684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:29 Heat of formation + Delta-G solvation = -62.066894 kcal Electronic energy + Delta-G solvation = -26483.366533 eV Core-core repulsion = 22723.411047 eV Total energy + Delta-G solvation = -3759.955486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16300 -41.08589 -39.50823 -37.50667 -36.05556 -35.63997 -34.18054 -31.50039 -29.68790 -29.51855 -29.27585 -27.30817 -26.08961 -24.51560 -23.56037 -22.29723 -21.71910 -21.43646 -19.87477 -19.09369 -18.80372 -18.06886 -17.32770 -16.96978 -16.79343 -16.34857 -16.21259 -16.07795 -16.00784 -15.56071 -15.37157 -14.98068 -14.50086 -14.27386 -14.14284 -13.79734 -13.52891 -13.41944 -13.00432 -12.87050 -12.76269 -12.69514 -12.58516 -12.53102 -12.16914 -12.12665 -11.83781 -11.53032 -11.39528 -11.34417 -11.12880 -10.86331 -10.79083 -10.62690 -9.66311 -8.97600 -7.89544 -5.26713 1.20403 1.44756 1.48818 1.54789 1.62253 2.44921 2.47329 2.78231 3.01320 3.16317 3.30115 3.43739 3.48100 3.56550 3.61895 3.83240 3.86251 3.89415 3.99280 4.01628 4.13157 4.25872 4.29763 4.36915 4.42731 4.51153 4.65432 4.72790 4.77592 4.78981 4.83491 4.90702 4.93131 4.97416 5.05207 5.31725 5.36046 5.40152 5.63001 5.74240 6.11230 6.22519 6.36169 6.96265 7.03111 7.67395 8.31780 9.21092 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026214 B = 0.003385 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.874094 B = 8268.706162 C = 8734.222732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.061 4.061 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.197 3.803 11 C 0.077 3.923 12 H 0.089 0.911 13 O -0.390 6.390 14 C 0.038 3.962 15 C 0.069 3.931 16 N -0.591 5.591 17 C 0.537 3.463 18 O -0.582 6.582 19 C -0.139 4.139 20 H 0.164 0.836 21 C -0.163 4.163 22 H 0.113 0.887 23 C 0.078 3.922 24 O -0.391 6.391 25 C 0.079 3.921 26 C -0.169 4.169 27 H 0.113 0.887 28 C 0.113 3.887 29 H 0.087 0.913 30 C 0.140 3.860 31 H 0.250 0.750 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.031 0.969 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 -23.969 -4.039 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.254 4.254 3 Si 0.811 3.189 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.072 3.928 11 C 0.018 3.982 12 H 0.107 0.893 13 O -0.309 6.309 14 C -0.038 4.038 15 C -0.052 4.052 16 N -0.322 5.322 17 C 0.327 3.673 18 O -0.462 6.462 19 C -0.160 4.160 20 H 0.181 0.819 21 C -0.182 4.182 22 H 0.131 0.869 23 C 0.002 3.998 24 O -0.310 6.310 25 C 0.002 3.998 26 C -0.188 4.188 27 H 0.131 0.869 28 C 0.007 3.993 29 H 0.105 0.895 30 C 0.013 3.987 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.599 -23.662 -3.582 23.939 hybrid contribution 0.303 1.754 0.573 1.870 sum 0.902 -21.908 -3.008 22.132 Atomic orbital electron populations 1.70125 1.06271 1.25738 1.57625 1.25682 0.96705 1.01059 1.01953 0.85085 0.77149 0.78417 0.78234 1.20141 1.21649 1.20372 1.19389 0.90965 0.83402 1.44119 0.90085 1.44609 1.02158 1.00750 1.87342 1.21037 0.84056 0.88644 0.99045 1.23612 0.95341 0.95614 0.83629 0.89328 1.87893 1.93574 1.24329 1.25143 1.23307 0.95568 0.80829 1.04127 1.22922 0.98545 1.03594 0.80104 1.47605 1.66073 1.06915 1.11628 1.20305 0.75376 0.87264 0.84355 1.90697 1.52543 1.82197 1.20791 1.22368 1.00173 0.89585 1.03863 0.81929 1.24241 0.91765 1.00880 1.01286 0.86853 1.23092 1.04034 0.81153 0.91505 1.89189 1.47109 1.41329 1.53407 1.23062 0.88975 0.89822 0.97902 1.24221 1.03706 0.94559 0.96319 0.86931 1.21965 0.96338 0.81260 0.99730 0.89468 1.21638 0.94592 0.85015 0.97429 0.94031 0.95459 0.95348 0.84666 0.91527 0.84231 0.90313 0.86975 0.88941 0.87199 0.89363 0.95056 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.75 10.31 21.65 0.22 -57.52 16 2 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 3 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.55 10.28 84.03 0.86 -13.69 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.62 -33.57 3.40 -691.65 -2.35 -35.93 16 10 C 0.20 10.14 5.04 86.92 0.44 10.58 16 11 C 0.08 3.01 4.02 31.75 0.13 3.14 16 12 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 13 O -0.39 -13.69 9.98 -148.98 -1.49 -15.18 16 14 C 0.04 0.81 7.02 72.18 0.51 1.31 16 15 C 0.07 1.34 6.28 86.47 0.54 1.88 16 16 N -0.59 -16.75 2.75 -792.56 -2.18 -18.93 16 17 C 0.54 15.14 7.45 87.66 0.65 15.79 16 18 O -0.58 -22.04 15.77 -3.04 -0.05 -22.09 16 19 C -0.14 -2.41 4.69 -11.54 -0.05 -2.47 16 20 H 0.16 1.53 6.48 -2.39 -0.02 1.51 16 21 C -0.16 -2.69 6.91 -9.80 -0.07 -2.75 16 22 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 23 C 0.08 0.92 7.44 72.48 0.54 1.46 16 24 O -0.39 -6.36 11.65 -148.98 -1.74 -8.09 16 25 C 0.08 1.00 7.44 72.49 0.54 1.54 16 26 C -0.17 -3.01 6.65 -9.79 -0.07 -3.07 16 27 H 0.11 2.53 7.82 -2.39 -0.02 2.52 16 28 C 0.11 4.31 3.18 46.08 0.15 4.46 16 29 H 0.09 3.74 7.11 -2.39 -0.02 3.73 16 30 C 0.14 6.22 6.80 86.57 0.59 6.81 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.03 1.58 7.32 -2.39 -0.02 1.56 16 33 H 0.03 1.61 7.43 -2.38 -0.02 1.59 16 34 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.14 1.33 5.50 -2.38 -0.01 1.31 16 37 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.03 1.31 7.32 -2.39 -0.02 1.29 16 Total: -1.00 -77.63 339.40 0.69 -76.95 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.02 Total: 10.33 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 5.23 Total: 21.94 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -4.31 Total: -112.38 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -3.27 Total: -45.36 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -77.63 0.69 -76.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083169684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.879 kcal (2) G-P(sol) polarization free energy of solvation -77.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds