Wall clock time and date at job start Fri Apr 10 2020 17:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34212 * 125.44186 * 2 1 4 4 C 1.33650 * 110.91170 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.80375 * 179.97438 * 4 3 2 6 6 C 1.36419 * 108.39438 * 359.97438 * 4 3 2 7 7 C 1.47376 * 127.19010 * 179.97438 * 6 4 3 8 8 O 1.21612 * 120.00642 * 90.02421 * 7 6 4 9 9 N 1.34779 * 120.00091 * 270.02545 * 7 6 4 10 10 C 1.46497 * 120.00337 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.88381 * 31.11975 * 10 9 7 12 12 C 1.55123 * 111.19641 * 267.18981 * 10 9 7 13 13 N 1.47420 * 104.72348 * 279.18837 * 12 10 9 14 14 C 1.36941 * 125.65328 * 155.81149 * 13 12 10 15 15 H 1.08004 * 119.99682 * 5.56440 * 14 13 12 16 16 C 1.38809 * 120.00409 * 185.55417 * 14 13 12 17 17 N 1.31621 * 120.00091 * 7.32909 * 16 14 13 18 18 Si 1.86797 * 120.00086 * 187.32322 * 16 14 13 19 19 H 1.48496 * 109.47097 * 84.99270 * 18 16 14 20 20 H 1.48507 * 109.47357 * 324.99550 * 18 16 14 21 21 H 1.48499 * 109.47352 * 204.99398 * 18 16 14 22 22 C 1.47025 * 108.70274 * 335.55601 * 13 12 10 23 23 C 1.54317 * 107.27002 * 1.28135 * 22 13 12 24 24 H 1.09002 * 110.72105 * 263.83122 * 23 22 13 25 25 O 1.42899 * 110.72068 * 140.56181 * 23 22 13 26 26 C 1.34178 * 125.43451 * 180.28597 * 2 1 3 27 27 C 1.50704 * 127.02597 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47087 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46968 * 119.97385 * 1 2 3 30 30 H 1.08996 * 109.47507 * 239.97881 * 1 2 3 31 31 H 1.08999 * 109.47361 * 269.99838 * 5 4 3 32 32 H 1.09000 * 109.47416 * 29.99583 * 5 4 3 33 33 H 1.08997 * 109.47150 * 149.99890 * 5 4 3 34 34 H 0.97002 * 120.00096 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.49943 * 160.34675 * 12 10 9 36 36 H 1.09001 * 110.34282 * 37.95151 * 12 10 9 37 37 H 0.97001 * 120.00005 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88454 * 120.70691 * 22 13 12 39 39 H 1.09003 * 109.87921 * 241.71412 * 22 13 12 40 40 H 0.96695 * 114.00682 * 61.45176 * 25 23 22 41 41 H 1.08996 * 109.47298 * 270.13243 * 27 26 2 42 42 H 1.09000 * 109.47131 * 30.13953 * 27 26 2 43 43 H 1.08999 * 109.47092 * 150.13250 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0934 0.0000 4 6 3.5790 0.7581 0.0006 5 6 4.7390 1.7200 0.0002 6 6 3.6709 -0.6030 0.0015 7 6 4.9023 -1.4127 0.0019 8 8 5.4105 -1.7464 1.0551 9 7 5.4655 -1.7833 -1.1652 10 6 6.6899 -2.5877 -1.1649 11 1 6.7257 -3.2405 -0.2927 12 6 7.9518 -1.6884 -1.2364 13 7 8.0863 -1.3443 -2.6636 14 6 8.7290 -0.2425 -3.1619 15 1 9.2689 0.4147 -2.4963 16 6 8.6870 0.0294 -4.5224 17 7 7.9141 -0.6850 -5.3128 18 14 9.7272 1.4094 -5.2317 19 1 11.0927 0.9020 -5.5199 20 1 9.8092 2.5217 -4.2512 21 1 9.1067 1.9016 -6.4878 22 6 7.4213 -2.3832 -3.4637 23 6 6.8185 -3.4054 -2.4773 24 1 7.4913 -4.2519 -2.3399 25 8 5.5353 -3.8454 -2.9266 26 6 2.2849 -1.0932 -0.0055 27 6 1.8307 -2.5302 -0.0132 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5134 -0.8902 30 1 -0.3634 -0.5141 0.8897 31 1 5.0190 1.9512 -1.0275 32 1 4.4505 2.6375 0.5132 33 1 5.5866 1.2673 0.5145 34 1 5.0605 -1.5168 -2.0054 35 1 8.8302 -2.2353 -0.8936 36 1 7.8089 -0.7868 -0.6407 37 1 7.8844 -0.4947 -6.2635 38 1 6.6296 -1.9374 -4.0657 39 1 8.1478 -2.8738 -4.1116 40 1 5.5511 -4.2949 -3.7826 41 1 1.7186 -2.8813 1.0126 42 1 0.8740 -2.6061 -0.5299 43 1 2.5712 -3.1425 -0.5279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083621216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:32 Heat of formation + Delta-G solvation = -51.533882 kcal Electronic energy + Delta-G solvation = -26455.309107 eV Core-core repulsion = 22695.810367 eV Total energy + Delta-G solvation = -3759.498740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47337 -39.38815 -37.66803 -35.06457 -34.19358 -33.59080 -32.92296 -31.55247 -29.74832 -28.63889 -27.96092 -27.09662 -24.79800 -24.28003 -22.97652 -20.50329 -20.19324 -19.69402 -19.07231 -17.27675 -16.85792 -16.63410 -16.37484 -15.71885 -15.47006 -14.74771 -14.52599 -14.09728 -14.03707 -13.56963 -13.50796 -13.39181 -13.00902 -12.93681 -12.73126 -12.64066 -12.58147 -12.43085 -12.41770 -12.15555 -11.96069 -11.47921 -11.27788 -11.14595 -10.89879 -10.72911 -10.27632 -10.13168 -9.87889 -9.67178 -9.31719 -9.23479 -8.77780 -8.49638 -8.18760 -6.91468 -5.78692 -3.15030 1.72092 2.31255 2.83139 2.90889 3.35443 3.41154 3.42170 3.68240 4.40579 4.52597 4.60740 4.89651 4.93371 5.12350 5.20796 5.28310 5.30801 5.38201 5.39124 5.50094 5.53187 5.59132 5.63885 5.68066 5.79986 5.80566 5.85232 5.89193 6.01871 6.11667 6.24409 6.29624 6.45047 6.53578 6.57568 7.02098 7.20391 7.21198 7.47858 7.67628 8.00851 8.07996 8.16225 8.63742 9.11147 9.72287 10.36406 11.30785 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.004511 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.100019 B = 6205.163294 C = 6998.733177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.024 4.024 3 O -0.174 6.174 4 C 0.045 3.955 5 C -0.080 4.080 6 C -0.221 4.221 7 C 0.592 3.408 8 O -0.549 6.549 9 N -0.679 5.679 10 C 0.139 3.861 11 H 0.093 0.907 12 C 0.123 3.877 13 N -0.598 5.598 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.142 3.858 23 C 0.066 3.934 24 H 0.066 0.934 25 O -0.562 6.562 26 C -0.143 4.143 27 C -0.082 4.082 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.409 0.591 35 H 0.033 0.967 36 H 0.049 0.951 37 H 0.252 0.748 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.377 0.623 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 -1.923 7.488 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 O -0.071 6.071 4 C -0.007 4.007 5 C -0.136 4.136 6 C -0.225 4.225 7 C 0.378 3.622 8 O -0.428 6.428 9 N -0.328 5.328 10 C 0.033 3.967 11 H 0.111 0.889 12 C -0.004 4.004 13 N -0.326 5.326 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.017 3.983 23 C 0.006 3.994 24 H 0.084 0.916 25 O -0.366 6.366 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.244 0.756 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.224 0.776 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.622 -1.518 8.575 15.335 hybrid contribution 0.775 0.430 -1.485 1.730 sum -11.847 -1.088 7.089 13.849 Atomic orbital electron populations 1.20255 0.84993 1.03780 1.03386 1.21899 0.93640 0.83373 1.08298 1.83637 1.16060 1.35148 1.72302 1.22510 0.83049 0.93491 1.01619 1.20460 0.91557 0.96919 1.04660 1.21019 0.93988 0.93157 1.14328 1.17228 0.82238 0.78894 0.83888 1.90754 1.64219 1.56261 1.31524 1.45529 1.26260 1.52586 1.08424 1.22245 0.85238 0.92128 0.97074 0.88904 1.22069 0.93300 0.96818 0.88210 1.44301 1.64933 1.24339 0.98996 1.19041 1.24388 1.00571 0.91560 0.90360 1.24782 0.99808 0.99410 0.96260 1.69910 1.40674 1.42165 1.04087 0.86142 0.79791 0.81387 0.78471 1.21559 1.20691 1.21716 1.21950 0.97135 0.87849 0.91377 1.23492 0.84693 0.96190 0.95038 0.91641 1.86417 1.29781 1.79310 1.41113 1.21020 0.90175 0.96352 1.06983 1.20172 1.01274 0.90333 1.02139 0.90667 0.89766 0.89898 0.88851 0.90169 0.88948 0.75552 0.94921 0.93231 0.93718 0.90775 0.94935 0.77628 0.91339 0.91426 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 9.94 36.00 0.36 -0.21 16 2 C -0.02 -0.31 7.28 -35.74 -0.26 -0.57 16 3 O -0.17 -2.58 10.52 7.67 0.08 -2.50 16 4 C 0.04 0.70 7.37 -34.97 -0.26 0.45 16 5 C -0.08 -1.08 10.24 36.00 0.37 -0.71 16 6 C -0.22 -3.76 6.07 -103.28 -0.63 -4.39 16 7 C 0.59 11.23 7.25 -12.54 -0.09 11.14 16 8 O -0.55 -11.83 16.75 5.27 0.09 -11.74 16 9 N -0.68 -12.66 4.81 -52.70 -0.25 -12.92 16 10 C 0.14 2.62 3.31 -65.67 -0.22 2.41 16 11 H 0.09 1.72 7.54 -51.93 -0.39 1.33 16 12 C 0.12 2.57 6.95 -2.42 -0.02 2.55 16 13 N -0.60 -14.55 3.39 -169.94 -0.58 -15.13 16 14 C -0.23 -6.10 10.26 -15.06 -0.15 -6.26 16 15 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 16 C -0.01 -0.17 5.45 -17.43 -0.09 -0.26 16 17 N -0.92 -25.78 10.45 55.49 0.58 -25.20 16 18 Si 0.91 21.52 29.56 -169.99 -5.02 16.49 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.14 3.20 5.21 -3.07 -0.02 3.19 16 23 C 0.07 1.19 4.12 -24.90 -0.10 1.09 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 O -0.56 -9.14 12.67 -35.23 -0.45 -9.59 16 26 C -0.14 -2.11 6.38 -102.49 -0.65 -2.77 16 27 C -0.08 -1.01 10.15 36.01 0.37 -0.64 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 34 H 0.41 7.83 8.37 -40.82 -0.34 7.49 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.07 1.87 6.80 -51.93 -0.35 1.51 16 39 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 40 H 0.38 4.72 9.11 45.56 0.42 5.14 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -32.58 362.64 -7.17 -39.75 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.68 Total: 10.36 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.40 Total: 5.00 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.25 Total: -53.25 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.28 Total: -23.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.58 -7.17 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083621216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.789 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds