Wall clock time and date at job start Fri Apr 10 2020 17:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34212 * 125.44186 * 2 1 4 4 C 1.33650 * 110.91170 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.80375 * 179.97438 * 4 3 2 6 6 C 1.36419 * 108.39438 * 359.97438 * 4 3 2 7 7 C 1.47376 * 127.19010 * 179.97438 * 6 4 3 8 8 O 1.21612 * 120.00642 * 90.02421 * 7 6 4 9 9 N 1.34779 * 120.00091 * 270.02545 * 7 6 4 10 10 C 1.46497 * 120.00337 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.88381 * 31.11975 * 10 9 7 12 12 C 1.55123 * 111.19641 * 267.18981 * 10 9 7 13 13 N 1.47420 * 104.72348 * 279.18837 * 12 10 9 14 14 C 1.36941 * 125.65328 * 155.81149 * 13 12 10 15 15 H 1.08004 * 119.99682 * 5.56440 * 14 13 12 16 16 C 1.38809 * 120.00409 * 185.55417 * 14 13 12 17 17 N 1.31621 * 120.00091 * 7.32909 * 16 14 13 18 18 Si 1.86797 * 120.00086 * 187.32322 * 16 14 13 19 19 H 1.48496 * 109.47097 * 84.99270 * 18 16 14 20 20 H 1.48507 * 109.47357 * 324.99550 * 18 16 14 21 21 H 1.48499 * 109.47352 * 204.99398 * 18 16 14 22 22 C 1.47025 * 108.70274 * 335.55601 * 13 12 10 23 23 C 1.54317 * 107.27002 * 1.28135 * 22 13 12 24 24 H 1.09002 * 110.72105 * 263.83122 * 23 22 13 25 25 O 1.42899 * 110.72068 * 140.56181 * 23 22 13 26 26 C 1.34178 * 125.43451 * 180.28597 * 2 1 3 27 27 C 1.50704 * 127.02597 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47087 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46968 * 119.97385 * 1 2 3 30 30 H 1.08996 * 109.47507 * 239.97881 * 1 2 3 31 31 H 1.08999 * 109.47361 * 269.99838 * 5 4 3 32 32 H 1.09000 * 109.47416 * 29.99583 * 5 4 3 33 33 H 1.08997 * 109.47150 * 149.99890 * 5 4 3 34 34 H 0.97002 * 120.00096 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.49943 * 160.34675 * 12 10 9 36 36 H 1.09001 * 110.34282 * 37.95151 * 12 10 9 37 37 H 0.97001 * 120.00005 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88454 * 120.70691 * 22 13 12 39 39 H 1.09003 * 109.87921 * 241.71412 * 22 13 12 40 40 H 0.96695 * 114.00682 * 61.45176 * 25 23 22 41 41 H 1.08996 * 109.47298 * 270.13243 * 27 26 2 42 42 H 1.09000 * 109.47131 * 30.13953 * 27 26 2 43 43 H 1.08999 * 109.47092 * 150.13250 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0934 0.0000 4 6 3.5790 0.7581 0.0006 5 6 4.7390 1.7200 0.0002 6 6 3.6709 -0.6030 0.0015 7 6 4.9023 -1.4127 0.0019 8 8 5.4105 -1.7464 1.0551 9 7 5.4655 -1.7833 -1.1652 10 6 6.6899 -2.5877 -1.1649 11 1 6.7257 -3.2405 -0.2927 12 6 7.9518 -1.6884 -1.2364 13 7 8.0863 -1.3443 -2.6636 14 6 8.7290 -0.2425 -3.1619 15 1 9.2689 0.4147 -2.4963 16 6 8.6870 0.0294 -4.5224 17 7 7.9141 -0.6850 -5.3128 18 14 9.7272 1.4094 -5.2317 19 1 11.0927 0.9020 -5.5199 20 1 9.8092 2.5217 -4.2512 21 1 9.1067 1.9016 -6.4878 22 6 7.4213 -2.3832 -3.4637 23 6 6.8185 -3.4054 -2.4773 24 1 7.4913 -4.2519 -2.3399 25 8 5.5353 -3.8454 -2.9266 26 6 2.2849 -1.0932 -0.0055 27 6 1.8307 -2.5302 -0.0132 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5134 -0.8902 30 1 -0.3634 -0.5141 0.8897 31 1 5.0190 1.9512 -1.0275 32 1 4.4505 2.6375 0.5132 33 1 5.5866 1.2673 0.5145 34 1 5.0605 -1.5168 -2.0054 35 1 8.8302 -2.2353 -0.8936 36 1 7.8089 -0.7868 -0.6407 37 1 7.8844 -0.4947 -6.2635 38 1 6.6296 -1.9374 -4.0657 39 1 8.1478 -2.8738 -4.1116 40 1 5.5511 -4.2949 -3.7826 41 1 1.7186 -2.8813 1.0126 42 1 0.8740 -2.6061 -0.5299 43 1 2.5712 -3.1425 -0.5279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083621216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:32 Heat of formation + Delta-G solvation = -75.070414 kcal Electronic energy + Delta-G solvation = -26456.329728 eV Core-core repulsion = 22695.810367 eV Total energy + Delta-G solvation = -3760.519361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.59893 -40.93855 -39.25578 -36.62573 -35.31497 -35.18224 -34.13168 -33.35744 -30.64163 -30.31001 -29.20735 -28.69377 -26.46876 -25.52957 -24.30719 -22.27621 -21.61598 -21.15081 -20.28657 -18.99557 -18.33937 -18.06404 -17.56161 -17.24116 -16.75940 -16.55642 -16.00030 -15.73282 -15.46709 -14.94676 -14.69228 -14.40664 -14.32037 -14.26111 -14.00883 -13.87014 -13.76088 -13.63701 -13.48318 -13.33700 -13.19522 -13.09479 -13.02610 -12.77712 -12.48927 -12.21293 -12.03253 -11.90587 -11.80254 -11.19965 -10.87189 -10.75358 -10.43986 -10.11631 -9.25970 -8.89649 -7.84633 -5.22809 0.57274 1.18554 1.43068 1.46967 1.48213 1.55795 1.76067 2.26144 2.47817 3.13782 3.33974 3.48476 3.56419 3.72569 3.85927 3.89541 3.96224 4.10473 4.32748 4.33620 4.36744 4.49823 4.55622 4.59904 4.65597 4.69794 4.80175 4.80980 4.86105 4.87964 4.88964 4.98553 5.06567 5.18923 5.33222 5.46954 5.51410 5.55703 5.71027 6.08830 6.17309 6.48675 6.85871 7.07440 7.12967 7.72633 8.36247 9.22500 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.004511 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.100019 B = 6205.163294 C = 6998.733177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.016 4.016 3 O -0.177 6.177 4 C 0.036 3.964 5 C -0.077 4.077 6 C -0.252 4.252 7 C 0.597 3.403 8 O -0.580 6.580 9 N -0.676 5.676 10 C 0.143 3.857 11 H 0.103 0.897 12 C 0.123 3.877 13 N -0.614 5.614 14 C -0.242 4.242 15 H 0.078 0.922 16 C -0.055 4.055 17 N -0.943 5.943 18 Si 0.973 3.027 19 H -0.287 1.287 20 H -0.272 1.272 21 H -0.294 1.294 22 C 0.154 3.846 23 C 0.088 3.912 24 H 0.092 0.908 25 O -0.562 6.562 26 C -0.167 4.167 27 C -0.078 4.078 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.406 0.594 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.247 0.753 38 H 0.044 0.956 39 H 0.007 0.993 40 H 0.395 0.605 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 -1.924 7.929 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 O -0.075 6.075 4 C -0.016 4.016 5 C -0.133 4.133 6 C -0.257 4.257 7 C 0.384 3.616 8 O -0.461 6.461 9 N -0.324 5.324 10 C 0.037 3.963 11 H 0.120 0.880 12 C -0.003 4.003 13 N -0.342 5.342 14 C -0.370 4.370 15 H 0.096 0.904 16 C -0.249 4.249 17 N -0.592 5.592 18 Si 0.801 3.199 19 H -0.214 1.214 20 H -0.197 1.197 21 H -0.221 1.221 22 C 0.028 3.972 23 C 0.028 3.972 24 H 0.110 0.890 25 O -0.369 6.369 26 C -0.168 4.168 27 C -0.134 4.134 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.241 0.759 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.245 0.755 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.133 -1.533 9.021 16.837 hybrid contribution 1.196 0.431 -1.605 2.047 sum -12.937 -1.102 7.416 14.953 Atomic orbital electron populations 1.20523 0.81327 1.05261 1.05230 1.22803 0.95471 0.82353 1.05796 1.83659 1.15722 1.35936 1.72161 1.22761 0.83923 0.93418 1.01458 1.20465 0.90634 0.97638 1.04587 1.21127 0.94392 0.93874 1.16282 1.17485 0.82498 0.78348 0.83272 1.90721 1.65294 1.57630 1.32418 1.45536 1.26074 1.52458 1.08297 1.22197 0.84374 0.91867 0.97881 0.87959 1.22157 0.94930 0.96917 0.86312 1.44501 1.64786 1.24220 1.00646 1.19344 1.24410 1.01362 0.91932 0.90417 1.25506 1.01055 1.01743 0.96601 1.70102 1.41793 1.43458 1.03812 0.85186 0.78067 0.79097 0.77515 1.21416 1.19705 1.22086 1.21740 0.95444 0.88157 0.91853 1.23208 0.85483 0.95607 0.92916 0.89044 1.86389 1.28635 1.79389 1.42510 1.21359 0.89161 0.98054 1.08256 1.20201 1.02060 0.88501 1.02687 0.89425 0.87869 0.87854 0.89197 0.87483 0.90284 0.75886 0.93502 0.94443 0.94316 0.93793 0.97480 0.75481 0.90746 0.88438 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.94 71.24 0.71 -0.19 16 2 C -0.02 -0.39 7.28 24.76 0.18 -0.21 16 3 O -0.18 -5.04 10.52 4.52 0.05 -4.99 16 4 C 0.04 1.13 7.37 25.26 0.19 1.32 16 5 C -0.08 -2.09 10.24 71.23 0.73 -1.36 16 6 C -0.25 -8.64 6.07 -18.99 -0.12 -8.76 16 7 C 0.60 22.93 7.25 86.65 0.63 23.56 16 8 O -0.58 -25.32 16.75 -4.07 -0.07 -25.38 16 9 N -0.68 -25.41 4.81 -438.91 -2.11 -27.52 16 10 C 0.14 5.32 3.31 46.46 0.15 5.47 16 11 H 0.10 3.68 7.54 -2.39 -0.02 3.66 16 12 C 0.12 5.15 6.95 86.93 0.60 5.76 16 13 N -0.61 -30.25 3.39 -691.56 -2.35 -32.60 16 14 C -0.24 -13.13 10.26 84.03 0.86 -12.27 16 15 H 0.08 4.12 7.84 -2.91 -0.02 4.09 16 16 C -0.06 -3.02 5.45 84.86 0.46 -2.56 16 17 N -0.94 -53.80 10.45 21.65 0.23 -53.57 16 18 Si 0.97 44.53 29.56 68.60 2.03 46.56 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 C 0.15 7.00 5.21 86.73 0.45 7.45 16 23 C 0.09 3.09 4.12 31.78 0.13 3.22 16 24 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 25 O -0.56 -17.53 12.67 -148.98 -1.89 -19.42 16 26 C -0.17 -4.72 6.38 -18.49 -0.12 -4.84 16 27 C -0.08 -1.77 10.15 71.24 0.72 -1.05 16 28 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.34 7.93 -2.39 -0.02 2.32 16 34 H 0.41 15.81 8.37 -92.71 -0.78 15.03 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.04 2.27 6.80 -2.39 -0.02 2.25 16 39 H 0.01 0.35 7.97 -2.39 -0.02 0.33 16 40 H 0.40 9.27 9.11 -74.06 -0.67 8.60 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.57 7.90 -2.39 -0.02 1.55 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -71.10 362.64 1.07 -70.03 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.41 Total: 31.37 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.59 Total: 15.54 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.23 Total: -113.69 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.91 Total: -49.80 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.10 1.07 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083621216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.041 kcal (2) G-P(sol) polarization free energy of solvation -71.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds