Wall clock time and date at job start Fri Apr 10 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47477 * 2 1 4 4 C 1.50702 * 109.47050 * 120.00415 * 2 1 3 5 5 C 1.40373 * 126.64091 * 300.15248 * 4 2 1 6 6 C 1.35133 * 107.11109 * 180.22266 * 5 4 2 7 7 O 1.33934 * 108.76854 * 359.78096 * 6 5 4 8 8 C 1.34917 * 109.38439 * 359.97438 * 7 6 5 9 9 C 1.46651 * 125.98644 * 179.97438 * 8 7 6 10 10 O 1.21695 * 119.99796 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00209 * 0.02828 * 9 8 7 12 12 C 1.46503 * 120.00155 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64078 * 36.68828 * 12 11 9 14 14 C 1.54325 * 110.71811 * 273.54768 * 12 11 9 15 15 N 1.47026 * 107.26658 * 263.82756 * 14 12 11 16 16 C 1.36935 * 125.64458 * 181.02332 * 15 14 12 17 17 H 1.08000 * 120.00518 * 359.73057 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00888 * 20 18 16 22 22 H 1.48503 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00497 * 20 18 16 24 24 C 1.47421 * 108.70759 * 1.28889 * 15 14 12 25 25 C 1.55132 * 104.71877 * 335.55192 * 24 15 14 26 26 H 1.08993 * 111.22930 * 279.17590 * 25 24 15 27 27 O 1.42910 * 110.90254 * 155.27238 * 25 24 15 28 28 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47495 * 300.00315 * 1 2 3 30 30 H 1.09003 * 109.46889 * 59.99883 * 1 2 3 31 31 H 1.09003 * 109.47113 * 240.00066 * 2 1 3 32 32 H 1.08997 * 109.47361 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47216 * 300.00470 * 3 2 1 34 34 H 1.09003 * 109.46895 * 59.99933 * 3 2 1 35 35 H 1.07997 * 126.44573 * 0.02562 * 5 4 2 36 36 H 1.07996 * 125.61561 * 179.77812 * 6 5 4 37 37 H 0.96996 * 119.99849 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.88174 * 144.41763 * 14 12 11 39 39 H 1.09001 * 110.01556 * 23.31551 * 14 12 11 40 40 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.36459 * 94.47935 * 24 15 14 42 42 H 1.09000 * 110.37050 * 216.80786 * 24 15 14 43 43 H 0.96700 * 113.99676 * 67.98187 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7781 -0.3564 2.5648 6 6 2.4207 -1.2544 3.3438 7 8 3.0475 -2.1377 2.5560 8 6 2.8199 -1.8254 1.2634 9 6 3.3341 -2.5519 0.0979 10 8 3.0597 -2.1724 -1.0254 11 7 4.1105 -3.6400 0.2707 12 6 4.6238 -4.3661 -0.8936 13 1 4.8759 -3.6743 -1.6973 14 6 3.6006 -5.4153 -1.3772 15 7 3.9803 -6.7034 -0.7785 16 6 3.3361 -7.8956 -0.9752 17 1 2.4667 -7.9407 -1.6144 18 6 3.7975 -9.0454 -0.3491 19 7 4.8538 -8.9896 0.4341 20 14 2.9182 -10.6717 -0.6169 21 1 2.9426 -11.0155 -2.0613 22 1 3.6027 -11.7378 0.1578 23 1 1.5103 -10.5544 -0.1596 24 6 5.1655 -6.4976 0.0737 25 6 5.8511 -5.2315 -0.5037 26 1 6.4528 -5.4732 -1.3797 27 8 6.6412 -4.5800 0.4932 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.1838 0.4787 2.9048 36 1 2.4276 -1.2589 4.4237 37 1 4.3295 -3.9422 1.1660 38 1 3.6306 -5.4888 -2.4644 39 1 2.5983 -5.1365 -1.0521 40 1 5.1759 -9.7929 0.8719 41 1 4.8646 -6.3307 1.1080 42 1 5.8349 -7.3552 0.0061 43 1 7.4197 -5.0831 0.7687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083722514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:36 Heat of formation + Delta-G solvation = -46.382660 kcal Electronic energy + Delta-G solvation = -26126.947483 eV Core-core repulsion = 22367.672116 eV Total energy + Delta-G solvation = -3759.275367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.70870 -39.52773 -37.78211 -36.14785 -35.09108 -33.78121 -31.90159 -31.66580 -29.87702 -28.33293 -27.15396 -27.07961 -24.61959 -23.36658 -22.64229 -20.80281 -20.47744 -19.77982 -19.59287 -18.05316 -17.02179 -16.80043 -16.28040 -16.03303 -15.61116 -14.96618 -14.68468 -14.36843 -14.14588 -13.88255 -13.84081 -13.25126 -13.22520 -13.01338 -12.77558 -12.54789 -12.39336 -12.30395 -12.27189 -11.36390 -11.27923 -11.26079 -11.15801 -11.01499 -10.94836 -10.85778 -10.23663 -10.07883 -9.87350 -9.73645 -9.64754 -9.22773 -8.86568 -8.72099 -8.47073 -6.93700 -5.73719 -3.15828 1.14435 2.33724 2.78078 3.36890 3.37545 3.41591 3.42675 3.47431 4.37601 4.56084 4.58794 4.70226 4.91621 5.17307 5.20439 5.24787 5.32631 5.36848 5.50462 5.54242 5.58243 5.62135 5.66906 5.77949 5.83399 5.90514 5.94183 6.03834 6.10757 6.20318 6.23545 6.30556 6.36348 6.52450 6.62169 6.87403 6.97309 7.26074 7.51511 7.69106 7.81624 8.03912 8.23545 8.38794 9.12698 9.73173 10.35776 11.30388 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.003599 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.961414 B = 7777.821389 C = 8041.297871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.083 4.083 5 C -0.222 4.222 6 C -0.010 4.010 7 O -0.160 6.160 8 C -0.072 4.072 9 C 0.601 3.399 10 O -0.528 6.528 11 N -0.685 5.685 12 C 0.143 3.857 13 H 0.094 0.906 14 C 0.126 3.874 15 N -0.600 5.600 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.917 3.083 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.127 3.873 25 C 0.064 3.936 26 H 0.073 0.927 27 O -0.566 6.566 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.152 0.848 36 H 0.207 0.793 37 H 0.410 0.590 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.112 0.888 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 17.255 4.206 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.086 4.086 5 C -0.241 4.241 6 C -0.080 4.080 7 O -0.055 6.055 8 C -0.124 4.124 9 C 0.387 3.613 10 O -0.408 6.408 11 N -0.334 5.334 12 C 0.038 3.962 13 H 0.112 0.888 14 C -0.001 4.001 15 N -0.328 5.328 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.002 3.998 25 C 0.003 3.997 26 H 0.091 0.909 27 O -0.371 6.371 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.169 0.831 36 H 0.224 0.776 37 H 0.246 0.754 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.130 0.870 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.324 17.467 3.474 17.960 hybrid contribution -0.136 -1.295 0.705 1.481 sum -2.460 16.172 4.179 16.883 Atomic orbital electron populations 1.21765 0.94380 1.01968 1.01411 1.20002 0.95655 0.95648 0.95703 1.21759 1.01145 0.95084 1.01436 1.20533 0.97524 0.94655 0.95910 1.21622 1.06649 1.03485 0.92316 1.24303 0.96590 0.90178 0.96961 1.84112 1.58498 1.46967 1.15891 1.21981 1.07459 1.00650 0.82322 1.16526 0.78758 0.80078 0.85953 1.90767 1.59663 1.67940 1.22416 1.45627 1.49379 1.27271 1.11101 1.22089 0.93271 0.92952 0.87890 0.88803 1.21757 0.95751 0.85906 0.96660 1.44330 1.31829 1.02961 1.53634 1.19067 1.08173 0.83899 1.23950 0.90283 1.24781 0.98397 0.98092 0.99276 1.69724 1.25506 1.27464 1.34643 0.86104 0.78695 0.82846 0.77581 1.21045 1.21534 1.21182 1.22626 0.90199 0.94742 0.92277 1.23754 0.90559 0.94131 0.91231 0.90875 1.86347 1.41959 1.48739 1.60012 0.92582 0.92981 0.92316 0.87026 0.92728 0.92321 0.92981 0.83055 0.77616 0.75395 0.94371 0.94942 0.93599 0.96113 0.87029 0.77383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.09 37.16 0.34 -1.17 16 2 C -0.05 -0.66 3.19 -91.77 -0.29 -0.95 16 3 C -0.14 -1.43 9.09 37.16 0.34 -1.09 16 4 C -0.08 -1.14 4.87 -104.43 -0.51 -1.65 16 5 C -0.22 -2.43 10.41 -39.88 -0.42 -2.85 16 6 C -0.01 -0.11 12.08 29.63 0.36 0.25 16 7 O -0.16 -2.29 10.40 4.98 0.05 -2.24 16 8 C -0.07 -1.14 7.13 -36.80 -0.26 -1.40 16 9 C 0.60 10.77 7.78 -12.87 -0.10 10.67 16 10 O -0.53 -10.25 14.13 5.19 0.07 -10.17 16 11 N -0.68 -12.38 4.78 -53.34 -0.25 -12.63 16 12 C 0.14 2.70 3.14 -66.09 -0.21 2.49 16 13 H 0.09 1.70 7.69 -51.93 -0.40 1.30 16 14 C 0.13 2.73 6.98 -3.06 -0.02 2.71 16 15 N -0.60 -15.10 3.39 -169.93 -0.58 -15.67 16 16 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.07 10.08 55.49 0.56 -25.51 16 20 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.13 2.93 5.62 -2.41 -0.01 2.92 16 25 C 0.06 1.17 4.23 -24.46 -0.10 1.07 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 O -0.57 -9.13 12.63 -35.23 -0.44 -9.58 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.49 8.05 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.70 5.48 -51.93 -0.28 1.42 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.47 8.06 -51.93 -0.42 0.05 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.41 7.37 7.95 -40.82 -0.32 7.05 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 2.86 5.85 -51.93 -0.30 2.55 16 43 H 0.38 4.65 9.12 45.56 0.42 5.07 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -31.65 355.16 -6.91 -38.55 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.50 Total: 10.81 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.14 Total: 4.32 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.27 Total: -53.81 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.32 Total: -21.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.65 -6.91 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083722514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.828 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds