Wall clock time and date at job start Fri Apr 10 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47477 * 2 1 4 4 C 1.50702 * 109.47050 * 120.00415 * 2 1 3 5 5 C 1.40373 * 126.64091 * 300.15248 * 4 2 1 6 6 C 1.35133 * 107.11109 * 180.22266 * 5 4 2 7 7 O 1.33934 * 108.76854 * 359.78096 * 6 5 4 8 8 C 1.34917 * 109.38439 * 359.97438 * 7 6 5 9 9 C 1.46651 * 125.98644 * 179.97438 * 8 7 6 10 10 O 1.21695 * 119.99796 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00209 * 0.02828 * 9 8 7 12 12 C 1.46503 * 120.00155 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64078 * 36.68828 * 12 11 9 14 14 C 1.54325 * 110.71811 * 273.54768 * 12 11 9 15 15 N 1.47026 * 107.26658 * 263.82756 * 14 12 11 16 16 C 1.36935 * 125.64458 * 181.02332 * 15 14 12 17 17 H 1.08000 * 120.00518 * 359.73057 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00888 * 20 18 16 22 22 H 1.48503 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00497 * 20 18 16 24 24 C 1.47421 * 108.70759 * 1.28889 * 15 14 12 25 25 C 1.55132 * 104.71877 * 335.55192 * 24 15 14 26 26 H 1.08993 * 111.22930 * 279.17590 * 25 24 15 27 27 O 1.42910 * 110.90254 * 155.27238 * 25 24 15 28 28 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47495 * 300.00315 * 1 2 3 30 30 H 1.09003 * 109.46889 * 59.99883 * 1 2 3 31 31 H 1.09003 * 109.47113 * 240.00066 * 2 1 3 32 32 H 1.08997 * 109.47361 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47216 * 300.00470 * 3 2 1 34 34 H 1.09003 * 109.46895 * 59.99933 * 3 2 1 35 35 H 1.07997 * 126.44573 * 0.02562 * 5 4 2 36 36 H 1.07996 * 125.61561 * 179.77812 * 6 5 4 37 37 H 0.96996 * 119.99849 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.88174 * 144.41763 * 14 12 11 39 39 H 1.09001 * 110.01556 * 23.31551 * 14 12 11 40 40 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.36459 * 94.47935 * 24 15 14 42 42 H 1.09000 * 110.37050 * 216.80786 * 24 15 14 43 43 H 0.96700 * 113.99676 * 67.98187 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7781 -0.3564 2.5648 6 6 2.4207 -1.2544 3.3438 7 8 3.0475 -2.1377 2.5560 8 6 2.8199 -1.8254 1.2634 9 6 3.3341 -2.5519 0.0979 10 8 3.0597 -2.1724 -1.0254 11 7 4.1105 -3.6400 0.2707 12 6 4.6238 -4.3661 -0.8936 13 1 4.8759 -3.6743 -1.6973 14 6 3.6006 -5.4153 -1.3772 15 7 3.9803 -6.7034 -0.7785 16 6 3.3361 -7.8956 -0.9752 17 1 2.4667 -7.9407 -1.6144 18 6 3.7975 -9.0454 -0.3491 19 7 4.8538 -8.9896 0.4341 20 14 2.9182 -10.6717 -0.6169 21 1 2.9426 -11.0155 -2.0613 22 1 3.6027 -11.7378 0.1578 23 1 1.5103 -10.5544 -0.1596 24 6 5.1655 -6.4976 0.0737 25 6 5.8511 -5.2315 -0.5037 26 1 6.4528 -5.4732 -1.3797 27 8 6.6412 -4.5800 0.4932 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.1838 0.4787 2.9048 36 1 2.4276 -1.2589 4.4237 37 1 4.3295 -3.9422 1.1660 38 1 3.6306 -5.4888 -2.4644 39 1 2.5983 -5.1365 -1.0521 40 1 5.1759 -9.7929 0.8719 41 1 4.8646 -6.3307 1.1080 42 1 5.8349 -7.3552 0.0061 43 1 7.4197 -5.0831 0.7687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083722514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:36 Heat of formation + Delta-G solvation = -69.500730 kcal Electronic energy + Delta-G solvation = -26127.949958 eV Core-core repulsion = 22367.672116 eV Total energy + Delta-G solvation = -3760.277841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.70608 -40.98864 -39.31137 -37.13710 -36.67383 -35.36766 -33.61867 -32.73161 -31.14014 -29.96960 -28.78726 -27.98895 -26.47897 -24.60251 -23.60074 -22.33864 -21.95146 -21.27818 -20.68360 -19.30814 -18.87090 -18.27239 -17.38071 -17.27336 -16.95253 -16.69402 -15.97178 -15.77779 -15.56141 -15.34453 -14.81387 -14.73998 -14.62506 -14.15181 -14.07154 -14.02939 -13.89595 -13.43553 -13.20771 -13.04069 -12.90648 -12.77454 -12.73169 -12.23072 -12.16733 -12.10112 -12.04647 -11.93418 -11.60497 -10.94984 -10.85611 -10.77373 -10.65822 -10.25442 -9.56616 -8.96504 -7.82108 -5.27599 0.04611 1.43258 1.46599 1.49106 1.55542 1.72342 2.08981 2.20680 2.46209 3.07205 3.28702 3.62761 3.65391 3.72436 3.81238 3.86862 3.97390 4.28208 4.30477 4.33079 4.41989 4.47929 4.55809 4.59714 4.75736 4.80878 4.81188 4.85139 4.96878 5.00839 5.05034 5.19810 5.34668 5.38137 5.38206 5.42964 5.44499 5.56641 5.69299 5.91509 6.22039 6.44553 6.83893 7.00570 7.06313 7.69435 8.32033 9.19051 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.003599 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.961414 B = 7777.821389 C = 8041.297871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.131 4.131 4 C -0.076 4.076 5 C -0.227 4.227 6 C 0.008 3.992 7 O -0.178 6.178 8 C -0.120 4.120 9 C 0.597 3.403 10 O -0.553 6.553 11 N -0.687 5.687 12 C 0.151 3.849 13 H 0.105 0.895 14 C 0.127 3.873 15 N -0.618 5.618 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.058 4.058 19 N -0.944 5.944 20 Si 0.981 3.019 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.135 3.865 25 C 0.088 3.912 26 H 0.090 0.910 27 O -0.563 6.563 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.185 0.815 36 H 0.254 0.746 37 H 0.409 0.591 38 H 0.044 0.956 39 H 0.015 0.985 40 H 0.250 0.750 41 H -0.005 1.005 42 H 0.087 0.913 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 18.944 5.361 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.077 4.077 3 C -0.188 4.188 4 C -0.079 4.079 5 C -0.245 4.245 6 C -0.061 4.061 7 O -0.074 6.074 8 C -0.172 4.172 9 C 0.386 3.614 10 O -0.435 6.435 11 N -0.336 5.336 12 C 0.045 3.955 13 H 0.123 0.877 14 C 0.001 3.999 15 N -0.345 5.345 16 C -0.375 4.375 17 H 0.096 0.904 18 C -0.251 4.251 19 N -0.593 5.593 20 Si 0.809 3.191 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.010 3.990 25 C 0.027 3.973 26 H 0.107 0.893 27 O -0.370 6.370 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.202 0.798 36 H 0.269 0.731 37 H 0.245 0.755 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.060 0.940 41 H 0.013 0.987 42 H 0.105 0.895 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.894 19.176 4.628 19.938 hybrid contribution -0.001 -1.741 0.442 1.796 sum -2.894 17.435 5.070 18.386 Atomic orbital electron populations 1.21734 0.92908 1.01263 1.03116 1.20041 0.96868 0.96655 0.94109 1.21716 1.00364 0.93618 1.03078 1.20921 0.95802 0.93493 0.97645 1.21987 1.07202 1.04646 0.90696 1.25347 0.93900 0.88255 0.98587 1.84093 1.59449 1.48247 1.15574 1.21652 1.10618 1.02373 0.82512 1.16857 0.78127 0.79782 0.86660 1.90742 1.60484 1.68593 1.23634 1.45600 1.49848 1.27503 1.10639 1.21933 0.92508 0.92397 0.88651 0.87723 1.21808 0.95779 0.85539 0.96785 1.44564 1.32493 1.03469 1.54007 1.19391 1.08607 0.85237 1.24237 0.90443 1.25573 0.99245 1.01082 0.99218 1.69949 1.26406 1.27871 1.35094 0.85117 0.77491 0.78784 0.77697 1.20149 1.21532 1.20899 1.22417 0.89431 0.96104 0.91082 1.23365 0.90609 0.91578 0.91731 0.89267 1.86328 1.42644 1.48589 1.59434 0.94464 0.90849 0.91044 0.90253 0.93910 0.91098 0.90916 0.79778 0.73065 0.75500 0.93818 0.96740 0.94025 0.98658 0.89529 0.75160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.09 71.98 0.65 -2.05 16 2 C -0.06 -1.44 3.19 -11.54 -0.04 -1.47 16 3 C -0.13 -2.48 9.09 71.98 0.65 -1.82 16 4 C -0.08 -2.00 4.87 -19.74 -0.10 -2.09 16 5 C -0.23 -4.27 10.41 22.07 0.23 -4.04 16 6 C 0.01 0.15 12.08 67.10 0.81 0.96 16 7 O -0.18 -4.95 10.40 -5.10 -0.05 -5.00 16 8 C -0.12 -3.83 7.13 24.07 0.17 -3.66 16 9 C 0.60 22.14 7.78 86.44 0.67 22.81 16 10 O -0.55 -22.35 14.13 -4.33 -0.06 -22.41 16 11 N -0.69 -25.50 4.78 -440.89 -2.11 -27.60 16 12 C 0.15 5.75 3.14 46.18 0.14 5.89 16 13 H 0.10 3.80 7.69 -2.39 -0.02 3.78 16 14 C 0.13 5.68 6.98 86.73 0.61 6.28 16 15 N -0.62 -31.96 3.39 -691.53 -2.35 -34.31 16 16 C -0.25 -13.87 10.27 84.04 0.86 -13.00 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 19 N -0.94 -54.28 10.08 21.65 0.22 -54.06 16 20 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 C 0.14 6.39 5.62 86.93 0.49 6.88 16 25 C 0.09 3.22 4.23 32.06 0.14 3.35 16 26 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 27 O -0.56 -17.63 12.63 -148.98 -1.88 -19.51 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.17 8.05 -2.39 -0.02 1.15 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 2.50 5.48 -2.39 -0.01 2.49 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 35 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.25 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.41 15.14 7.95 -92.71 -0.74 14.40 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.01 0.70 8.05 -2.39 -0.02 0.68 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.09 4.56 5.85 -2.39 -0.01 4.55 16 43 H 0.40 9.21 9.12 -74.06 -0.68 8.53 16 Total: -1.00 -70.94 355.16 1.19 -69.75 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.37 Total: 30.70 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.76 Total: 15.26 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -4.23 Total: -115.97 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -2.00 Total: -46.92 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.94 1.19 -69.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083722514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.250 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds