Wall clock time and date at job start Fri Apr 10 2020 17:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34516 * 125.79292 * 2 1 4 4 C 1.41380 * 106.83856 * 179.97438 * 3 2 1 5 5 C 1.34515 * 106.84574 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.79485 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47210 * 359.97438 * 6 5 4 8 8 C 1.53004 * 109.47238 * 119.99666 * 6 5 4 9 9 C 1.50699 * 109.47290 * 239.99983 * 6 5 4 10 10 O 1.21282 * 120.00056 * 359.97438 * 9 6 5 11 11 N 1.34778 * 120.00019 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99814 * 179.97438 * 11 9 6 13 13 H 1.08998 * 110.88755 * 31.12666 * 12 11 9 14 14 C 1.55125 * 111.19317 * 267.18685 * 12 11 9 15 15 N 1.47431 * 104.72242 * 279.19279 * 14 12 11 16 16 C 1.36936 * 125.64654 * 155.82274 * 15 14 12 17 17 H 1.08003 * 120.00041 * 348.65507 * 16 15 14 18 18 C 1.38809 * 119.99789 * 168.66574 * 16 15 14 19 19 N 1.31622 * 119.99604 * 165.60431 * 18 16 15 20 20 Si 1.86790 * 120.00266 * 345.59960 * 18 16 15 21 21 H 1.48510 * 109.47196 * 65.29814 * 20 18 16 22 22 H 1.48505 * 109.47343 * 305.30110 * 20 18 16 23 23 H 1.48497 * 109.47293 * 185.29855 * 20 18 16 24 24 C 1.47018 * 108.70349 * 335.55070 * 15 14 12 25 25 C 1.54322 * 107.27073 * 1.29059 * 24 15 14 26 26 H 1.09004 * 110.71793 * 263.82612 * 25 24 15 27 27 O 1.42896 * 110.72143 * 140.55360 * 25 24 15 28 28 O 1.34309 * 108.41875 * 0.26240 * 5 4 3 29 29 H 1.08999 * 109.47198 * 89.99543 * 1 2 3 30 30 H 1.08993 * 109.47346 * 210.00254 * 1 2 3 31 31 H 1.09009 * 109.46991 * 330.00212 * 1 2 3 32 32 H 1.07988 * 126.57884 * 359.94239 * 3 2 1 33 33 H 1.08005 * 126.58251 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.46840 * 60.00296 * 8 6 5 35 35 H 1.09002 * 109.46895 * 179.97438 * 8 6 5 36 36 H 1.08993 * 109.47328 * 300.00294 * 8 6 5 37 37 H 0.96999 * 119.99933 * 359.97438 * 11 9 6 38 38 H 1.09004 * 110.49663 * 160.35124 * 14 12 11 39 39 H 1.09002 * 110.34598 * 37.95680 * 14 12 11 40 40 H 0.97002 * 120.00325 * 354.92604 * 19 18 16 41 41 H 1.09005 * 109.88024 * 120.69985 * 24 15 14 42 42 H 1.09000 * 109.88604 * 241.87043 * 24 15 14 43 43 H 0.96707 * 114.00512 * 61.45558 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 3.5814 -0.7124 0.0004 6 6 4.7704 -1.6381 0.0014 7 1 5.6884 -1.0505 0.0019 8 6 4.7286 -2.5207 1.2505 9 6 4.7316 -2.5071 -1.2292 10 8 3.8271 -2.3869 -2.0282 11 7 5.7020 -3.4179 -1.4420 12 6 5.6639 -4.2630 -2.6380 13 1 5.1959 -3.7375 -3.4704 14 6 4.9409 -5.6057 -2.3532 15 7 5.9582 -6.4471 -1.6968 16 6 5.7034 -7.5013 -0.8608 17 1 4.7032 -7.6651 -0.4877 18 6 6.7308 -8.3591 -0.4927 19 7 6.5655 -9.1894 0.5152 20 14 8.3476 -8.3354 -1.4278 21 1 9.0180 -7.0259 -1.2243 22 1 8.0853 -8.5375 -2.8754 23 1 9.2250 -9.4238 -0.9271 24 6 7.2913 -5.9709 -2.0937 25 6 7.0862 -4.7527 -3.0185 26 1 7.1234 -5.0529 -4.0657 27 8 8.0586 -3.7417 -2.7461 28 8 2.2923 -1.0895 -0.0062 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.9667 2.1203 -0.0009 33 1 4.5213 1.2431 0.0012 34 1 3.8107 -3.1084 1.2495 35 1 5.5885 -3.1906 1.2509 36 1 4.7567 -1.8922 2.1405 37 1 6.4256 -3.5138 -0.8031 38 1 4.6108 -6.0664 -3.2842 39 1 4.0934 -5.4458 -1.6867 40 1 5.7551 -9.1514 1.0470 41 1 7.8572 -5.6746 -1.2104 42 1 7.8218 -6.7580 -2.6296 43 1 8.9717 -4.0240 -2.8939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083842774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:40 Heat of formation + Delta-G solvation = -63.915953 kcal Electronic energy + Delta-G solvation = -26206.406813 eV Core-core repulsion = 22446.371145 eV Total energy + Delta-G solvation = -3760.035667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.57876 -41.24049 -39.62802 -36.79161 -35.54806 -35.24597 -34.08406 -33.86827 -32.03946 -30.42923 -29.46565 -27.44122 -26.04720 -24.97254 -22.76877 -22.74543 -22.36023 -21.31200 -20.83390 -19.71495 -18.53503 -18.37605 -17.79566 -17.24871 -16.95781 -16.81004 -16.29110 -15.89610 -15.53294 -15.28962 -15.08167 -14.79430 -14.53722 -14.35177 -13.97325 -13.91994 -13.76202 -13.69342 -13.55415 -13.34340 -13.18370 -12.98784 -12.91049 -12.62898 -12.51069 -12.30092 -12.13843 -11.56832 -11.27270 -11.08137 -10.94097 -10.76272 -10.57535 -10.15897 -9.22369 -9.11616 -8.67362 -5.51263 0.72818 1.37738 1.51647 1.51940 1.63737 1.73823 1.98843 2.18890 2.56259 2.93072 3.10520 3.31387 3.45699 3.59743 3.62862 3.73744 3.90854 3.97745 4.13104 4.14471 4.19989 4.38330 4.41017 4.53272 4.59135 4.64417 4.66536 4.69834 4.75472 4.79095 4.83523 4.90886 4.95180 5.02964 5.11816 5.27882 5.43450 5.49767 5.67256 6.05174 6.27166 6.48578 6.78026 6.83158 7.16008 7.36707 8.02842 8.84907 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.003695 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.571859 B = 7574.974478 C = 8076.463630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.035 4.035 3 C -0.221 4.221 4 C -0.204 4.204 5 C -0.014 4.014 6 C -0.021 4.021 7 H 0.160 0.840 8 C -0.139 4.139 9 C 0.514 3.486 10 O -0.578 6.578 11 N -0.688 5.688 12 C 0.146 3.854 13 H 0.107 0.893 14 C 0.122 3.878 15 N -0.622 5.622 16 C -0.312 4.312 17 H 0.037 0.963 18 C -0.079 4.079 19 N -0.963 5.963 20 Si 1.113 2.887 21 H -0.239 1.239 22 H -0.282 1.282 23 H -0.317 1.317 24 C 0.071 3.929 25 C 0.107 3.893 26 H 0.107 0.893 27 O -0.555 6.555 28 O -0.192 6.192 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.412 0.588 38 H 0.045 0.955 39 H 0.026 0.974 40 H 0.246 0.754 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 22.336 -3.129 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.239 4.239 4 C -0.223 4.223 5 C -0.064 4.064 6 C -0.042 4.042 7 H 0.178 0.822 8 C -0.196 4.196 9 C 0.301 3.699 10 O -0.458 6.458 11 N -0.338 5.338 12 C 0.040 3.960 13 H 0.125 0.875 14 C -0.005 4.005 15 N -0.350 5.350 16 C -0.440 4.440 17 H 0.055 0.945 18 C -0.271 4.271 19 N -0.607 5.607 20 Si 0.939 3.061 21 H -0.163 1.163 22 H -0.210 1.210 23 H -0.246 1.246 24 C -0.054 4.054 25 C 0.047 3.953 26 H 0.125 0.875 27 O -0.363 6.363 28 O -0.089 6.089 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.249 0.751 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.563 21.690 -3.624 21.998 hybrid contribution -1.339 -0.450 0.566 1.522 sum -1.902 21.239 -3.059 21.543 Atomic orbital electron populations 1.20458 0.83123 1.05081 1.04228 1.23269 0.95649 0.84114 1.05431 1.21876 0.92313 1.00231 1.09518 1.21891 0.99583 0.92952 1.07859 1.21880 0.82687 0.94436 1.07408 1.19975 0.95604 0.94968 0.93627 0.82241 1.21770 1.02570 0.99368 0.95940 1.20920 0.81134 0.80414 0.87433 1.90682 1.36167 1.70536 1.48391 1.45462 1.27221 1.36133 1.24985 1.22102 0.95214 0.90061 0.88660 0.87549 1.22155 0.92181 0.90141 0.95985 1.44636 1.01288 1.34623 1.54503 1.19985 0.96081 1.05753 1.22184 0.94506 1.27299 1.06279 0.94044 0.99460 1.71003 1.28814 1.41688 1.19210 0.83401 0.72297 0.76523 0.73851 1.16305 1.20987 1.24605 1.22952 0.88441 0.96086 0.97882 1.22928 0.87745 0.86265 0.98406 0.87536 1.86431 1.19942 1.38238 1.91679 1.83976 1.17119 1.36456 1.71381 0.89592 0.90863 0.86673 0.80929 0.80970 0.94332 0.90375 0.88699 0.75150 0.93687 0.95523 0.94552 0.92910 0.94634 0.74749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.42 71.24 0.74 -0.49 16 2 C -0.03 -0.88 7.32 24.83 0.18 -0.70 16 3 C -0.22 -4.92 10.81 22.19 0.24 -4.69 16 4 C -0.20 -4.79 10.78 22.19 0.24 -4.55 16 5 C -0.01 -0.39 5.21 24.83 0.13 -0.26 16 6 C -0.02 -0.53 3.13 -12.29 -0.04 -0.57 16 7 H 0.16 2.76 8.10 -2.39 -0.02 2.74 16 8 C -0.14 -3.37 9.07 71.98 0.65 -2.71 16 9 C 0.51 16.75 7.15 87.66 0.63 17.38 16 10 O -0.58 -23.47 15.43 3.85 0.06 -23.41 16 11 N -0.69 -21.27 4.71 -435.60 -2.05 -23.32 16 12 C 0.15 4.76 3.31 46.46 0.15 4.91 16 13 H 0.11 3.40 7.54 -2.39 -0.02 3.38 16 14 C 0.12 4.95 6.95 86.93 0.60 5.56 16 15 N -0.62 -28.89 3.32 -691.54 -2.30 -31.18 16 16 C -0.31 -17.93 10.56 84.03 0.89 -17.04 16 17 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 19 N -0.96 -61.56 13.70 21.65 0.30 -61.26 16 20 Si 1.11 50.53 24.53 68.60 1.68 52.21 16 21 H -0.24 -8.91 5.43 99.48 0.54 -8.37 16 22 H -0.28 -12.00 6.84 99.48 0.68 -11.32 16 23 H -0.32 -15.16 7.11 99.48 0.71 -14.45 16 24 C 0.07 2.61 4.37 86.73 0.38 2.99 16 25 C 0.11 2.96 4.12 31.78 0.13 3.09 16 26 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 27 O -0.56 -12.28 12.67 -148.98 -1.89 -14.17 16 28 O -0.19 -6.28 10.34 4.28 0.04 -6.23 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.17 2.69 8.06 -2.92 -0.02 2.67 16 33 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.82 7.57 -2.39 -0.02 1.81 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 11.68 7.81 -92.71 -0.72 10.96 16 38 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 41 H 0.05 1.99 6.70 -2.38 -0.02 1.97 16 42 H 0.04 1.34 3.83 -2.39 -0.01 1.34 16 43 H 0.40 5.32 9.11 -74.05 -0.67 4.64 16 Total: -1.00 -81.45 351.45 0.66 -80.80 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.59 Total: 27.76 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.39 Total: -1.19 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.05 Total: -115.76 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.78 Total: -43.82 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.68 Total: 52.21 kcal Total: -81.45 0.66 -80.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083842774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.882 kcal (2) G-P(sol) polarization free energy of solvation -81.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds