Wall clock time and date at job start Fri Apr 10 2020 17:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 C 1.50695 * 109.47414 * 120.00470 * 2 1 3 5 5 O 1.33660 * 125.79938 * 300.13963 * 4 2 1 6 6 C 1.34214 * 110.90810 * 180.26721 * 5 4 2 7 7 C 1.34177 * 109.12518 * 359.76533 * 6 5 4 8 8 C 1.36410 * 125.80725 * 120.00027 * 4 2 1 9 9 C 1.47386 * 127.18839 * 0.02562 * 8 4 2 10 10 O 1.21611 * 120.00007 * 359.70653 * 9 8 4 11 11 N 1.34779 * 119.99611 * 179.70978 * 9 8 4 12 12 C 1.46506 * 119.99461 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.88944 * 31.11911 * 12 11 9 14 14 C 1.54910 * 111.00124 * 267.19546 * 12 11 9 15 15 N 1.47433 * 104.83102 * 204.91900 * 14 12 11 16 16 C 1.36929 * 125.64983 * 204.11024 * 15 14 12 17 17 H 1.08004 * 119.99868 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00512 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99290 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00468 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47050 * 89.99782 * 20 18 16 22 22 H 1.48501 * 109.46772 * 209.99893 * 20 18 16 23 23 H 1.48500 * 109.46945 * 329.99850 * 20 18 16 24 24 C 1.47023 * 108.69869 * 24.12560 * 15 14 12 25 25 C 1.54316 * 107.27490 * 358.94415 * 24 15 14 26 26 H 1.09002 * 110.71968 * 219.43774 * 25 24 15 27 27 O 1.42909 * 110.87267 * 96.24107 * 25 24 15 28 28 H 1.09001 * 109.47297 * 299.99880 * 1 2 3 29 29 H 1.08999 * 109.47705 * 59.99705 * 1 2 3 30 30 H 1.09004 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47297 * 240.00120 * 2 1 3 32 32 H 1.09007 * 109.46912 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.46977 * 299.99962 * 3 2 1 34 34 H 1.09001 * 109.46923 * 60.00470 * 3 2 1 35 35 H 1.07996 * 125.43966 * 179.76595 * 6 5 4 36 36 H 1.08002 * 127.02676 * 180.02562 * 7 6 5 37 37 H 0.96995 * 120.00725 * 0.02562 * 11 9 8 38 38 H 1.09006 * 110.36732 * 323.75279 * 14 12 11 39 39 H 1.08995 * 110.37006 * 86.08346 * 14 12 11 40 40 H 0.97001 * 119.99829 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.88251 * 239.52013 * 24 15 14 42 42 H 1.09006 * 110.00813 * 118.43650 * 24 15 14 43 43 H 0.96695 * 113.99709 * 66.39117 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 1.7798 -0.3580 2.4946 6 6 2.3802 -1.1955 3.3545 7 6 3.0457 -2.1330 2.6627 8 6 2.8199 -1.8242 1.2431 9 6 3.3410 -2.5602 0.0774 10 8 3.0709 -2.1867 -1.0480 11 7 4.1169 -3.6473 0.2587 12 6 4.6353 -4.3785 -0.9001 13 1 4.8000 -3.7062 -1.7421 14 6 3.6884 -5.5399 -1.2928 15 7 4.5510 -6.5106 -1.9909 16 6 4.1300 -7.4408 -2.9032 17 1 3.0841 -7.5059 -3.1646 18 6 5.0473 -8.3003 -3.4920 19 7 6.3220 -8.2206 -3.1737 20 14 4.4728 -9.5698 -4.7361 21 1 4.5210 -8.9837 -6.0997 22 1 5.3609 -10.7585 -4.6764 23 1 3.0797 -9.9764 -4.4211 24 6 5.9382 -6.3145 -1.5448 25 6 5.9349 -5.1450 -0.5381 26 1 6.8095 -4.5104 -0.6813 27 8 5.8786 -5.6295 0.8051 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 2.3350 -1.1260 4.4312 36 1 3.6280 -2.9482 3.0662 37 1 4.3320 -3.9455 1.1562 38 1 3.2526 -5.9919 -0.4017 39 1 2.9043 -5.1813 -1.9595 40 1 6.9630 -8.8214 -3.5849 41 1 6.5705 -6.0678 -2.3977 42 1 6.3057 -7.2194 -1.0607 43 1 6.6674 -6.1160 1.0810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084106345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:45 Heat of formation + Delta-G solvation = -73.938077 kcal Electronic energy + Delta-G solvation = -25826.229939 eV Core-core repulsion = 22065.759680 eV Total energy + Delta-G solvation = -3760.470259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.57222 -40.89240 -39.36260 -36.51475 -36.47986 -35.40378 -34.04469 -33.31031 -30.42453 -29.98832 -28.81944 -28.09554 -26.56969 -24.61398 -23.42311 -22.37176 -21.98005 -21.34912 -20.63924 -19.27084 -18.65751 -18.26970 -17.18064 -16.95863 -16.91274 -16.64310 -15.95566 -15.84116 -15.65649 -15.58186 -14.99224 -14.80360 -14.49368 -14.34417 -14.06787 -14.02101 -13.86588 -13.57199 -13.19873 -13.07612 -12.83943 -12.75418 -12.30533 -12.27167 -12.20737 -12.13607 -12.01308 -11.89392 -11.88284 -10.97108 -10.87055 -10.82487 -10.77637 -10.11331 -9.53956 -8.96339 -7.89586 -5.25743 0.32857 1.15172 1.45063 1.47155 1.55712 1.79812 2.16275 2.30368 2.48905 3.17189 3.29410 3.49973 3.58650 3.74369 3.83920 3.90034 3.94008 4.02740 4.12813 4.23724 4.37312 4.45171 4.59785 4.63798 4.71200 4.73937 4.80416 4.88343 4.89320 4.96408 5.02923 5.15078 5.28175 5.29743 5.34131 5.39878 5.44953 5.51555 5.63598 6.06741 6.13151 6.58464 6.86009 7.05436 7.21725 7.69187 8.33192 9.20321 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.003242 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.076611 B = 8634.319006 C = 9350.162519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.139 4.139 4 C 0.082 3.918 5 O -0.174 6.174 6 C -0.026 4.026 7 C -0.199 4.199 8 C -0.268 4.268 9 C 0.582 3.418 10 O -0.579 6.579 11 N -0.688 5.688 12 C 0.152 3.848 13 H 0.094 0.906 14 C 0.133 3.867 15 N -0.621 5.621 16 C -0.249 4.249 17 H 0.077 0.923 18 C -0.059 4.059 19 N -0.947 5.947 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.272 1.272 24 C 0.161 3.839 25 C 0.093 3.907 26 H 0.091 0.909 27 O -0.564 6.564 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.175 0.825 37 H 0.417 0.583 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.028 0.972 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 17.490 15.356 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 C -0.196 4.196 4 C 0.028 3.972 5 O -0.070 6.070 6 C -0.091 4.091 7 C -0.218 4.218 8 C -0.273 4.273 9 C 0.372 3.628 10 O -0.461 6.461 11 N -0.339 5.339 12 C 0.045 3.955 13 H 0.112 0.888 14 C 0.006 3.994 15 N -0.348 5.348 16 C -0.378 4.378 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.197 1.197 24 C 0.035 3.965 25 C 0.032 3.968 26 H 0.108 0.892 27 O -0.373 6.373 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.193 0.807 37 H 0.255 0.745 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.384 18.094 14.545 24.077 hybrid contribution 0.794 -1.830 -0.554 2.071 sum -5.590 16.264 13.991 22.170 Atomic orbital electron populations 1.21809 0.92143 1.02088 1.03719 1.20330 0.97699 0.97125 0.90854 1.21801 1.00944 0.93143 1.03694 1.22971 0.95430 0.93936 0.84856 1.83760 1.59571 1.48945 1.14718 1.24708 0.97090 0.90425 0.96889 1.23147 1.05394 1.03364 0.89918 1.21176 1.09978 1.01667 0.94463 1.17682 0.77472 0.79787 0.87837 1.90691 1.60429 1.69000 1.26015 1.45371 1.50718 1.27578 1.10271 1.21964 0.92860 0.91719 0.88954 0.88840 1.21862 0.93395 0.89408 0.94721 1.44550 1.03954 1.38344 1.47939 1.19424 0.93599 1.09399 1.15372 0.90559 1.25614 0.95721 1.01674 1.02248 1.70114 1.01442 1.41044 1.46996 0.85051 0.77420 0.78085 0.78586 1.21166 1.21516 1.19722 1.21710 0.85908 0.94470 0.94399 1.23129 0.96526 0.94236 0.82872 0.89174 1.86208 1.47427 1.76145 1.27515 0.91077 0.89977 0.93545 0.87765 0.93176 0.90007 0.91129 0.73145 0.80739 0.74508 0.95882 0.95301 0.94087 0.95610 0.95416 0.75049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.17 71.98 0.66 -1.96 16 2 C -0.04 -0.96 3.25 -11.54 -0.04 -1.00 16 3 C -0.14 -2.46 9.18 71.98 0.66 -1.80 16 4 C 0.08 2.01 5.88 25.26 0.15 2.16 16 5 O -0.17 -3.49 10.52 4.41 0.05 -3.44 16 6 C -0.03 -0.39 12.03 66.89 0.80 0.41 16 7 C -0.20 -3.88 10.60 23.65 0.25 -3.63 16 8 C -0.27 -7.32 6.31 -18.99 -0.12 -7.44 16 9 C 0.58 19.67 7.81 86.65 0.68 20.34 16 10 O -0.58 -23.16 14.14 -4.07 -0.06 -23.22 16 11 N -0.69 -22.17 5.16 -439.24 -2.27 -24.44 16 12 C 0.15 5.82 3.31 46.38 0.15 5.97 16 13 H 0.09 3.86 7.54 -2.39 -0.02 3.84 16 14 C 0.13 6.12 6.92 86.85 0.60 6.72 16 15 N -0.62 -33.26 3.39 -691.98 -2.35 -35.61 16 16 C -0.25 -14.52 10.28 84.03 0.86 -13.66 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 19 N -0.95 -56.18 10.31 21.65 0.22 -55.95 16 20 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.16 7.75 5.14 86.73 0.45 8.20 16 25 C 0.09 3.31 4.19 31.78 0.13 3.44 16 26 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 27 O -0.56 -17.04 12.15 -148.98 -1.81 -18.85 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 3.04 5.52 -2.39 -0.01 3.03 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.25 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.18 2.64 7.74 -2.91 -0.02 2.62 16 37 H 0.42 11.62 6.75 -92.71 -0.63 11.00 16 38 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.03 1.38 7.38 -2.39 -0.02 1.36 16 42 H 0.03 1.46 7.44 -2.38 -0.02 1.44 16 43 H 0.40 8.93 9.12 -74.06 -0.68 8.25 16 Total: -1.00 -74.34 355.08 1.26 -73.08 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.26 Total: 25.24 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.71 Total: 14.82 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.39 Total: -116.00 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.82 Total: -45.50 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -74.34 1.26 -73.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084106345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.860 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds