Wall clock time and date at job start Fri Apr 10 2020 17:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00629 * 2 1 4 4 H 1.48504 * 109.47212 * 90.00104 * 3 2 1 5 5 H 1.48500 * 109.47048 * 330.00315 * 3 2 1 6 6 H 1.48500 * 109.47466 * 210.00130 * 3 2 1 7 7 C 1.38819 * 119.99232 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00210 * 325.43271 * 7 2 1 9 9 N 1.36937 * 119.99576 * 145.43593 * 7 2 1 10 10 C 1.46613 * 119.89546 * 330.31998 * 9 7 2 11 11 C 1.53103 * 108.00967 * 237.30478 * 10 9 7 12 12 C 1.53006 * 109.44355 * 301.01734 * 11 10 9 13 13 H 1.09002 * 113.42628 * 275.03916 * 12 11 10 14 14 C 1.54655 * 110.83507 * 143.89505 * 12 11 10 15 15 N 1.47809 * 85.79212 * 270.23099 * 14 12 11 16 16 C 1.34772 * 135.01350 * 153.79131 * 15 14 12 17 17 O 1.21281 * 120.00331 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00005 * 0.02562 * 16 15 14 19 19 C 1.52995 * 109.47269 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.62009 * 303.38796 * 19 18 16 21 21 C 1.54267 * 110.69347 * 66.45390 * 19 18 16 22 22 O 1.45591 * 106.36812 * 117.33008 * 21 19 18 23 23 C 1.34520 * 109.63962 * 21.27078 * 22 21 19 24 24 O 1.20827 * 126.42930 * 147.15857 * 23 22 21 25 25 C 1.51786 * 107.13792 * 327.17089 * 23 22 21 26 26 C 1.46819 * 89.97341 * 333.80807 * 15 14 12 27 27 H 1.09007 * 111.56170 * 274.48149 * 26 15 14 28 28 C 1.45681 * 119.88673 * 150.04374 * 9 7 2 29 29 H 0.96996 * 120.00861 * 174.82576 * 1 2 3 30 30 H 1.09002 * 109.74835 * 356.93545 * 10 9 7 31 31 H 1.08997 * 109.75160 * 117.62170 * 10 9 7 32 32 H 1.08993 * 109.47381 * 61.01411 * 11 10 9 33 33 H 1.09000 * 109.47019 * 181.02278 * 11 10 9 34 34 H 1.09001 * 113.82119 * 24.44583 * 14 12 11 35 35 H 1.09004 * 113.82192 * 156.01200 * 14 12 11 36 36 H 1.08996 * 109.47219 * 300.00072 * 18 16 15 37 37 H 1.09004 * 109.47146 * 60.00092 * 18 16 15 38 38 H 1.08997 * 110.07405 * 236.55969 * 21 19 18 39 39 H 1.08997 * 110.06755 * 358.04754 * 21 19 18 40 40 H 1.09004 * 110.61195 * 272.11592 * 25 23 22 41 41 H 1.09004 * 110.60462 * 149.14264 * 25 23 22 42 42 H 1.09004 * 108.71825 * 261.77101 * 28 9 7 43 43 H 1.09001 * 108.71535 * 19.79237 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 1.4001 5 1 1.4478 2.6526 -0.7000 6 1 3.5478 1.4399 -0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 1.6130 -2.0552 0.5297 9 7 3.1982 -1.3067 -0.6734 10 6 3.4386 -0.4850 -1.8636 11 6 3.7524 -1.4238 -3.0315 12 6 4.9813 -2.2689 -2.6897 13 1 5.9251 -1.7725 -2.9157 14 6 4.8416 -3.6992 -3.2611 15 7 4.1984 -4.0336 -1.9729 16 6 3.3035 -4.9552 -1.5653 17 8 2.9517 -4.9872 -0.4050 18 6 2.7399 -5.9459 -2.5511 19 6 1.7541 -6.8722 -1.8362 20 1 2.2370 -7.3720 -0.9965 21 6 0.5134 -6.0870 -1.3629 22 8 -0.6253 -6.6528 -2.0720 23 6 -0.3221 -7.8922 -2.4982 24 8 -1.0867 -8.8219 -2.6032 25 6 1.1607 -7.9036 -2.8222 26 6 4.9382 -2.9454 -1.3218 27 1 5.9288 -3.2695 -1.0024 28 6 4.2214 -2.2296 -0.2007 29 1 -0.4851 -0.8365 -0.0757 30 1 2.5490 0.1022 -2.0916 31 1 4.2838 0.1803 -1.6873 32 1 2.8996 -2.0784 -3.2108 33 1 3.9535 -0.8354 -3.9268 34 1 4.1718 -3.7673 -4.1183 35 1 5.7942 -4.2041 -3.4217 36 1 2.2230 -5.4115 -3.3481 37 1 3.5511 -6.5368 -2.9765 38 1 0.3822 -6.2076 -0.2876 39 1 0.6223 -5.0311 -1.6103 40 1 1.3307 -7.5913 -3.8526 41 1 1.5845 -8.8920 -2.6449 42 1 4.9514 -1.6720 0.3861 43 1 3.7517 -2.9721 0.4444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084279045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:48 Heat of formation + Delta-G solvation = -48.212702 kcal Electronic energy + Delta-G solvation = -26778.349854 eV Core-core repulsion = 23018.995131 eV Total energy + Delta-G solvation = -3759.354723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16138 -40.59864 -38.32336 -37.40781 -35.51941 -34.24400 -32.07353 -31.15294 -30.05467 -28.57351 -27.30179 -26.79101 -23.54204 -23.41652 -21.57121 -21.44031 -21.10455 -19.85015 -17.99675 -17.41967 -17.26945 -16.82552 -16.51806 -16.32937 -15.99087 -15.58863 -14.80811 -14.68233 -14.27400 -13.76647 -13.69122 -13.50026 -13.29620 -13.15012 -12.99011 -12.69301 -12.57964 -12.20252 -12.03497 -11.83630 -11.70096 -11.37993 -11.28960 -11.18887 -10.91791 -10.53817 -10.50447 -10.35003 -10.20848 -9.92257 -9.60839 -9.28680 -9.18319 -8.50051 -8.23797 -6.93325 -6.31315 -3.22159 1.79238 2.83916 2.90070 3.31749 3.50648 3.58482 3.71463 3.83016 4.00206 4.30227 4.45772 4.47163 4.67672 4.69730 4.93141 4.97430 5.03463 5.08894 5.17209 5.24571 5.34368 5.35526 5.37480 5.42206 5.50899 5.63944 5.75850 5.78636 5.80118 5.83669 5.98134 6.18954 6.30074 6.36412 6.59955 6.67442 6.74296 6.79494 6.96441 7.30384 7.94322 8.20038 8.37131 8.52456 9.10148 9.70286 10.26597 11.09130 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.004694 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.549680 B = 5963.045261 C = 7159.763416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 1.018 2.982 4 H -0.299 1.299 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.355 4.355 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.121 4.121 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.096 3.904 15 N -0.630 5.630 16 C 0.535 3.465 17 O -0.530 6.530 18 C -0.127 4.127 19 C -0.103 4.103 20 H 0.106 0.894 21 C 0.068 3.932 22 O -0.355 6.355 23 C 0.488 3.512 24 O -0.455 6.455 25 C -0.183 4.183 26 C 0.130 3.870 27 H 0.077 0.923 28 C 0.140 3.860 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.020 0.980 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.406 -11.106 -10.254 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.201 4.201 3 Si 0.847 3.153 4 H -0.227 1.227 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.160 4.160 12 C -0.127 4.127 13 H 0.108 0.892 14 C -0.027 4.027 15 N -0.366 5.366 16 C 0.324 3.676 17 O -0.406 6.406 18 C -0.167 4.167 19 C -0.123 4.123 20 H 0.124 0.876 21 C -0.006 4.006 22 O -0.273 6.273 23 C 0.328 3.672 24 O -0.338 6.338 25 C -0.222 4.222 26 C 0.026 3.974 27 H 0.095 0.905 28 C 0.014 3.986 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.038 0.962 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.277 -9.997 -9.521 17.826 hybrid contribution 0.522 -1.636 -0.094 1.720 sum 11.798 -11.633 -9.615 19.157 Atomic orbital electron populations 1.70866 1.06962 1.29784 1.46258 1.26125 0.95970 1.00675 0.97354 0.84621 0.76435 0.77367 0.76864 1.22700 1.22177 1.19649 1.20066 0.96568 0.97647 1.33971 0.91890 1.43791 1.15311 1.45171 1.27105 1.21273 0.99097 0.92074 0.85726 1.21937 0.95738 0.98970 0.99386 1.22878 1.00155 0.94417 0.95265 0.89225 1.23581 0.96846 0.94494 0.87801 1.49796 1.41858 1.32212 1.12704 1.19975 0.78747 0.80035 0.88812 1.90732 1.59465 1.71438 1.18986 1.21692 0.99632 0.96762 0.98619 1.22150 0.96021 0.95455 0.98625 0.87556 1.24098 0.80459 0.99148 0.96873 1.87132 1.42696 1.28706 1.68751 1.23296 0.89866 0.80901 0.73171 1.90695 1.58797 1.34688 1.49625 1.23129 0.94109 1.02398 1.02531 1.22427 0.94073 0.84959 0.95896 0.90523 1.20303 0.91838 0.93407 0.93101 0.92351 0.91381 0.95113 0.91825 0.92382 0.90278 0.90146 0.88508 0.88471 0.88725 0.87080 0.86586 0.87203 0.96221 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.70 55.49 0.76 -26.93 16 2 C 0.00 0.07 4.82 -17.43 -0.08 -0.02 16 3 Si 1.02 24.91 26.92 -169.99 -4.58 20.33 16 4 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -5.94 4.75 56.52 0.27 -5.67 16 7 C -0.35 -9.89 9.64 -15.06 -0.15 -10.04 16 8 H 0.06 1.97 8.02 -52.49 -0.42 1.55 16 9 N -0.59 -13.68 2.69 -174.88 -0.47 -14.15 16 10 C 0.14 2.93 4.29 -3.93 -0.02 2.91 16 11 C -0.12 -1.88 5.66 -26.67 -0.15 -2.03 16 12 C -0.11 -1.36 4.39 -89.97 -0.40 -1.75 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 14 C 0.10 0.95 7.97 -3.00 -0.02 0.93 16 15 N -0.63 -8.80 3.35 -173.80 -0.58 -9.38 16 16 C 0.54 7.95 7.52 -10.99 -0.08 7.86 16 17 O -0.53 -10.05 14.25 5.56 0.08 -9.97 16 18 C -0.13 -1.26 4.71 -27.89 -0.13 -1.40 16 19 C -0.10 -1.07 2.75 -89.15 -0.24 -1.31 16 20 H 0.11 1.09 8.04 -51.93 -0.42 0.67 16 21 C 0.07 0.93 6.51 37.82 0.25 1.17 16 22 O -0.36 -5.31 11.07 -39.58 -0.44 -5.75 16 23 C 0.49 6.54 8.57 36.54 0.31 6.85 16 24 O -0.46 -7.45 18.00 -18.29 -0.33 -7.78 16 25 C -0.18 -1.60 6.58 -26.54 -0.17 -1.78 16 26 C 0.13 1.96 4.23 -69.43 -0.29 1.67 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 C 0.14 2.81 6.19 -5.44 -0.03 2.78 16 29 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 30 H 0.07 1.53 5.59 -51.93 -0.29 1.24 16 31 H 0.03 0.61 6.75 -51.93 -0.35 0.26 16 32 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.11 1.73 7.33 -51.93 -0.38 1.35 16 40 H 0.12 0.78 7.82 -51.93 -0.41 0.38 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 1.72 6.36 -51.93 -0.33 1.39 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -34.94 340.37 -8.15 -43.08 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.50 Total: -0.43 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.22 Total: 5.85 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.29 Total: -50.46 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.69 Total: -23.51 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.58 Total: 20.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.94 -8.15 -43.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084279045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.132 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds