Wall clock time and date at job start Fri Apr 10 2020 17:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00629 * 2 1 4 4 H 1.48504 * 109.47212 * 90.00104 * 3 2 1 5 5 H 1.48500 * 109.47048 * 330.00315 * 3 2 1 6 6 H 1.48500 * 109.47466 * 210.00130 * 3 2 1 7 7 C 1.38819 * 119.99232 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00210 * 325.43271 * 7 2 1 9 9 N 1.36937 * 119.99576 * 145.43593 * 7 2 1 10 10 C 1.46613 * 119.89546 * 330.31998 * 9 7 2 11 11 C 1.53103 * 108.00967 * 237.30478 * 10 9 7 12 12 C 1.53006 * 109.44355 * 301.01734 * 11 10 9 13 13 H 1.09002 * 113.42628 * 275.03916 * 12 11 10 14 14 C 1.54655 * 110.83507 * 143.89505 * 12 11 10 15 15 N 1.47809 * 85.79212 * 270.23099 * 14 12 11 16 16 C 1.34772 * 135.01350 * 153.79131 * 15 14 12 17 17 O 1.21281 * 120.00331 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00005 * 0.02562 * 16 15 14 19 19 C 1.52995 * 109.47269 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.62009 * 303.38796 * 19 18 16 21 21 C 1.54267 * 110.69347 * 66.45390 * 19 18 16 22 22 O 1.45591 * 106.36812 * 117.33008 * 21 19 18 23 23 C 1.34520 * 109.63962 * 21.27078 * 22 21 19 24 24 O 1.20827 * 126.42930 * 147.15857 * 23 22 21 25 25 C 1.51786 * 107.13792 * 327.17089 * 23 22 21 26 26 C 1.46819 * 89.97341 * 333.80807 * 15 14 12 27 27 H 1.09007 * 111.56170 * 274.48149 * 26 15 14 28 28 C 1.45681 * 119.88673 * 150.04374 * 9 7 2 29 29 H 0.96996 * 120.00861 * 174.82576 * 1 2 3 30 30 H 1.09002 * 109.74835 * 356.93545 * 10 9 7 31 31 H 1.08997 * 109.75160 * 117.62170 * 10 9 7 32 32 H 1.08993 * 109.47381 * 61.01411 * 11 10 9 33 33 H 1.09000 * 109.47019 * 181.02278 * 11 10 9 34 34 H 1.09001 * 113.82119 * 24.44583 * 14 12 11 35 35 H 1.09004 * 113.82192 * 156.01200 * 14 12 11 36 36 H 1.08996 * 109.47219 * 300.00072 * 18 16 15 37 37 H 1.09004 * 109.47146 * 60.00092 * 18 16 15 38 38 H 1.08997 * 110.07405 * 236.55969 * 21 19 18 39 39 H 1.08997 * 110.06755 * 358.04754 * 21 19 18 40 40 H 1.09004 * 110.61195 * 272.11592 * 25 23 22 41 41 H 1.09004 * 110.60462 * 149.14264 * 25 23 22 42 42 H 1.09004 * 108.71825 * 261.77101 * 28 9 7 43 43 H 1.09001 * 108.71535 * 19.79237 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 1.4001 5 1 1.4478 2.6526 -0.7000 6 1 3.5478 1.4399 -0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 1.6130 -2.0552 0.5297 9 7 3.1982 -1.3067 -0.6734 10 6 3.4386 -0.4850 -1.8636 11 6 3.7524 -1.4238 -3.0315 12 6 4.9813 -2.2689 -2.6897 13 1 5.9251 -1.7725 -2.9157 14 6 4.8416 -3.6992 -3.2611 15 7 4.1984 -4.0336 -1.9729 16 6 3.3035 -4.9552 -1.5653 17 8 2.9517 -4.9872 -0.4050 18 6 2.7399 -5.9459 -2.5511 19 6 1.7541 -6.8722 -1.8362 20 1 2.2370 -7.3720 -0.9965 21 6 0.5134 -6.0870 -1.3629 22 8 -0.6253 -6.6528 -2.0720 23 6 -0.3221 -7.8922 -2.4982 24 8 -1.0867 -8.8219 -2.6032 25 6 1.1607 -7.9036 -2.8222 26 6 4.9382 -2.9454 -1.3218 27 1 5.9288 -3.2695 -1.0024 28 6 4.2214 -2.2296 -0.2007 29 1 -0.4851 -0.8365 -0.0757 30 1 2.5490 0.1022 -2.0916 31 1 4.2838 0.1803 -1.6873 32 1 2.8996 -2.0784 -3.2108 33 1 3.9535 -0.8354 -3.9268 34 1 4.1718 -3.7673 -4.1183 35 1 5.7942 -4.2041 -3.4217 36 1 2.2230 -5.4115 -3.3481 37 1 3.5511 -6.5368 -2.9765 38 1 0.3822 -6.2076 -0.2876 39 1 0.6223 -5.0311 -1.6103 40 1 1.3307 -7.5913 -3.8526 41 1 1.5845 -8.8920 -2.6449 42 1 4.9514 -1.6720 0.3861 43 1 3.7517 -2.9721 0.4444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084279045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:47 Heat of formation + Delta-G solvation = -73.435647 kcal Electronic energy + Delta-G solvation = -26779.443603 eV Core-core repulsion = 23018.995131 eV Total energy + Delta-G solvation = -3760.448472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22708 -41.70376 -39.49777 -38.59862 -37.19355 -35.22769 -34.01294 -32.63189 -31.23484 -29.61976 -28.68835 -27.87964 -25.12260 -24.84837 -22.67257 -22.55849 -22.45658 -20.98414 -19.65728 -18.78623 -18.38966 -17.94790 -17.68845 -17.39964 -17.13448 -16.89462 -16.34857 -15.79093 -15.76285 -15.44218 -15.11461 -14.70124 -14.50172 -14.33266 -14.18954 -13.87369 -13.79236 -13.65148 -13.17348 -12.97276 -12.85070 -12.65232 -12.63631 -12.41762 -12.17372 -12.09625 -11.72595 -11.61512 -11.54343 -11.41715 -11.22188 -11.12260 -10.44789 -10.44552 -9.52980 -8.95945 -8.56671 -5.44464 0.72696 1.49829 1.57350 1.76236 1.78171 1.93685 2.24983 2.59720 2.90680 2.98330 3.12030 3.39919 3.46779 3.53837 3.56707 3.80654 3.95596 4.16163 4.24436 4.26832 4.35898 4.43317 4.46059 4.56013 4.58978 4.60377 4.64726 4.71453 4.76634 4.81474 4.91185 4.96884 5.05056 5.07345 5.13285 5.25032 5.30989 5.61562 5.62117 5.86640 6.23859 6.28363 6.92781 6.96852 7.30279 7.69787 8.13802 8.77464 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.004694 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.549680 B = 5963.045261 C = 7159.763416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.053 4.053 3 Si 1.072 2.928 4 H -0.302 1.302 5 H -0.297 1.297 6 H -0.225 1.225 7 C -0.339 4.339 8 H 0.004 0.996 9 N -0.603 5.603 10 C 0.134 3.866 11 C -0.113 4.113 12 C -0.102 4.102 13 H 0.131 0.869 14 C 0.113 3.887 15 N -0.640 5.640 16 C 0.518 3.482 17 O -0.590 6.590 18 C -0.114 4.114 19 C -0.094 4.094 20 H 0.108 0.892 21 C 0.069 3.931 22 O -0.383 6.383 23 C 0.480 3.520 24 O -0.492 6.492 25 C -0.157 4.157 26 C 0.118 3.882 27 H 0.110 0.890 28 C 0.140 3.860 29 H 0.246 0.754 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.025 0.975 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.212 -11.523 -14.043 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.249 4.249 3 Si 0.897 3.103 4 H -0.230 1.230 5 H -0.224 1.224 6 H -0.149 1.149 7 C -0.469 4.469 8 H 0.022 0.978 9 N -0.328 5.328 10 C 0.009 3.991 11 C -0.152 4.152 12 C -0.121 4.121 13 H 0.149 0.851 14 C -0.007 4.007 15 N -0.375 5.375 16 C 0.309 3.691 17 O -0.471 6.471 18 C -0.153 4.153 19 C -0.113 4.113 20 H 0.126 0.874 21 C -0.005 4.005 22 O -0.302 6.302 23 C 0.323 3.677 24 O -0.378 6.378 25 C -0.194 4.194 26 C 0.014 3.986 27 H 0.127 0.873 28 C 0.014 3.986 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.163 0.837 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.043 0.957 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 16.160 -10.424 -13.374 23.424 hybrid contribution -1.031 -1.533 1.181 2.193 sum 15.129 -11.956 -12.193 22.815 Atomic orbital electron populations 1.71005 1.08303 1.28502 1.50226 1.27395 0.95815 1.04425 0.97289 0.83940 0.77006 0.72414 0.76980 1.23048 1.22418 1.14899 1.19739 0.98260 0.95573 1.33336 0.97815 1.43827 1.14450 1.46363 1.28153 1.21406 0.98422 0.92946 0.86285 1.21802 0.96600 0.98363 0.98455 1.22879 1.00170 0.95829 0.93230 0.85084 1.23816 0.98720 0.92043 0.86163 1.50049 1.41567 1.31298 1.14607 1.20945 0.78470 0.80730 0.88954 1.90720 1.61366 1.73182 1.21874 1.21713 1.00575 0.95863 0.97146 1.22119 0.94317 0.95455 0.99374 0.87355 1.23955 0.82371 0.98256 0.95897 1.87093 1.43981 1.30050 1.69033 1.24141 0.91937 0.79677 0.71950 1.90669 1.60517 1.35507 1.51061 1.23117 0.89403 1.03354 1.03556 1.22513 0.94610 0.85932 0.95555 0.87273 1.20319 0.90970 0.92165 0.95187 0.94504 0.94295 0.93147 0.94374 0.88625 0.88441 0.85672 0.87371 0.83661 0.90670 0.89948 0.83159 0.84099 0.95702 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.57 13.70 21.65 0.30 -61.28 16 2 C -0.05 -3.16 4.82 84.86 0.41 -2.75 16 3 Si 1.07 51.44 26.92 68.60 1.85 53.28 16 4 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.23 -9.06 4.75 99.48 0.47 -8.58 16 7 C -0.34 -20.24 9.64 84.04 0.81 -19.43 16 8 H 0.00 0.28 8.02 -2.91 -0.02 0.25 16 9 N -0.60 -28.46 2.69 -707.20 -1.90 -30.37 16 10 C 0.13 5.18 4.29 86.39 0.37 5.55 16 11 C -0.11 -3.10 5.66 30.63 0.17 -2.93 16 12 C -0.10 -1.99 4.39 -10.32 -0.05 -2.04 16 13 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 14 C 0.11 1.51 7.97 86.34 0.69 2.20 16 15 N -0.64 -16.00 3.35 -822.16 -2.75 -18.75 16 16 C 0.52 14.93 7.52 87.66 0.66 15.59 16 17 O -0.59 -23.80 14.25 -3.03 -0.04 -23.85 16 18 C -0.11 -1.90 4.71 29.85 0.14 -1.76 16 19 C -0.09 -1.81 2.75 -9.84 -0.03 -1.84 16 20 H 0.11 2.10 8.04 -2.39 -0.02 2.08 16 21 C 0.07 2.05 6.51 72.41 0.47 2.52 16 22 O -0.38 -12.15 11.07 -54.69 -0.61 -12.75 16 23 C 0.48 12.80 8.57 71.58 0.61 13.41 16 24 O -0.49 -16.30 18.00 21.52 0.39 -15.91 16 25 C -0.16 -2.24 6.58 30.72 0.20 -2.04 16 26 C 0.12 3.19 4.23 43.84 0.19 3.38 16 27 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 28 C 0.14 5.66 6.19 85.91 0.53 6.19 16 29 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 30 H 0.04 1.72 5.59 -2.39 -0.01 1.71 16 31 H 0.05 1.77 6.75 -2.39 -0.02 1.75 16 32 H 0.04 1.23 7.69 -2.39 -0.02 1.21 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.10 1.03 7.97 -2.39 -0.02 1.01 16 35 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.15 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.08 2.89 7.33 -2.39 -0.02 2.87 16 40 H 0.15 1.24 7.82 -2.39 -0.02 1.22 16 41 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.03 1.45 6.36 -2.39 -0.02 1.44 16 Total: -1.00 -89.60 340.37 3.15 -86.45 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.74 Total: 7.11 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.18 Total: 16.07 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.36 Total: -110.40 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.26 Total: -52.51 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 1.85 Total: 53.28 kcal Total: -89.60 3.15 -86.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084279045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.011 kcal (2) G-P(sol) polarization free energy of solvation -89.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds