Wall clock time and date at job start Fri Apr 10 2020 17:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34179 * 125.43830 * 2 1 4 4 C 1.47013 * 105.95861 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19550 * 179.97438 * 4 3 2 6 6 O 1.21614 * 120.00282 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99907 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00322 * 180.02562 * 7 5 4 9 9 H 1.09011 * 109.45700 * 35.02501 * 8 7 5 10 10 C 1.53038 * 109.44744 * 275.06385 * 8 7 5 11 11 C 1.53630 * 109.24196 * 178.49331 * 10 8 7 12 12 N 1.46926 * 108.53931 * 54.85639 * 11 10 8 13 13 C 1.36941 * 120.63137 * 126.37040 * 12 11 10 14 14 H 1.07996 * 119.99901 * 209.38924 * 13 12 11 15 15 C 1.38808 * 119.99647 * 29.39389 * 13 12 11 16 16 N 1.31626 * 119.99546 * 199.00867 * 15 13 12 17 17 Si 1.86798 * 120.00431 * 19.00803 * 15 13 12 18 18 H 1.48502 * 109.46809 * 273.02565 * 17 15 13 19 19 H 1.48501 * 109.46895 * 33.02750 * 17 15 13 20 20 H 1.48495 * 109.47341 * 153.02960 * 17 15 13 21 21 C 1.46931 * 118.73889 * 306.08807 * 12 11 10 22 22 C 1.53040 * 109.46295 * 154.99699 * 8 7 5 23 23 H 1.09005 * 109.49511 * 61.42363 * 22 8 7 24 24 O 1.42893 * 109.49964 * 301.32603 * 22 8 7 25 25 C 1.36423 * 105.61432 * 0.22085 * 4 3 2 26 26 C 1.50700 * 125.80227 * 179.75487 * 25 4 3 27 27 O 1.33648 * 108.39291 * 359.63565 * 25 4 3 28 28 H 1.08997 * 109.47208 * 90.00285 * 1 2 3 29 29 H 1.08999 * 109.46411 * 210.00405 * 1 2 3 30 30 H 1.08996 * 109.47161 * 329.99607 * 1 2 3 31 31 H 1.08002 * 127.02155 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99850 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.49571 * 298.56538 * 10 8 7 34 34 H 1.08993 * 109.50172 * 58.63364 * 10 8 7 35 35 H 1.08993 * 109.74094 * 295.11769 * 11 10 8 36 36 H 1.09000 * 109.66348 * 174.54685 * 11 10 8 37 37 H 0.97002 * 119.99392 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.58620 * 173.65277 * 21 12 11 39 39 H 1.08999 * 109.58655 * 293.93482 * 21 12 11 40 40 H 0.96701 * 114.00091 * 180.16633 * 24 22 8 41 41 H 1.08998 * 109.47163 * 89.99751 * 26 25 4 42 42 H 1.09004 * 109.47011 * 210.00440 * 26 25 4 43 43 H 1.09006 * 109.46991 * 330.00288 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6030 -0.0006 5 6 4.9025 1.4126 -0.0014 6 8 5.9892 0.8667 -0.0023 7 7 4.8243 2.7581 -0.0011 8 6 6.0483 3.5630 -0.0024 9 1 6.8135 3.0594 -0.5933 10 6 6.5458 3.7363 1.4345 11 6 7.8496 4.5488 1.4244 12 7 7.6075 5.8117 0.7135 13 6 7.9063 7.0117 1.3017 14 1 7.3397 7.8946 1.0451 15 6 8.9373 7.0933 2.2274 16 7 8.9957 8.1116 3.0594 17 14 10.2420 5.7580 2.2926 18 1 9.7810 4.6584 3.1779 19 1 10.4761 5.2276 0.9254 20 1 11.5058 6.3263 2.8263 21 6 7.0447 5.7623 -0.6428 22 6 5.7551 4.9360 -0.6117 23 1 5.0080 5.4502 -0.0070 24 8 5.2617 4.7716 -1.9426 25 6 3.5790 -0.7582 -0.0060 26 6 4.7391 -1.7201 -0.0139 27 8 2.2853 -1.0934 -0.0004 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9595 2.1230 -0.0004 32 1 3.9575 3.1935 -0.0007 33 1 5.7912 4.2619 2.0198 34 1 6.7316 2.7572 1.8758 35 1 8.6303 3.9856 0.9133 36 1 8.1586 4.7592 2.4483 37 1 9.7165 8.1687 3.7061 38 1 6.8225 6.7736 -0.9833 39 1 7.7623 5.2983 -1.3195 40 1 5.0567 5.6032 -2.3916 41 1 5.0222 -1.9563 1.0118 42 1 4.4489 -2.6349 -0.5307 43 1 5.5852 -1.2647 -0.5287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090063257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:54 Heat of formation + Delta-G solvation = -51.898952 kcal Electronic energy + Delta-G solvation = -25907.305863 eV Core-core repulsion = 22147.791292 eV Total energy + Delta-G solvation = -3759.514571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.75577 -39.69348 -38.03734 -35.63477 -34.46355 -33.37268 -33.02303 -32.01441 -30.36842 -29.60938 -29.07697 -25.80525 -24.86524 -23.19487 -22.74901 -21.95208 -20.81315 -20.12979 -19.23494 -17.41993 -17.07057 -16.66166 -16.65769 -16.07323 -15.76397 -15.02091 -14.55855 -14.51511 -14.36199 -13.96144 -13.73033 -13.58853 -13.32928 -13.25186 -13.05758 -12.87309 -12.77072 -12.61047 -12.48822 -12.23211 -12.01345 -11.74412 -11.54776 -11.19007 -10.99918 -10.25217 -10.13813 -10.01215 -9.90303 -9.86234 -9.66533 -9.55603 -8.81812 -8.65341 -8.50897 -7.05364 -6.01270 -3.41595 1.27521 1.84714 2.52222 3.30660 3.34800 3.44733 3.47484 3.50901 4.24736 4.29961 4.48634 4.62761 4.74651 4.92110 4.95440 5.09134 5.10869 5.16535 5.24985 5.33505 5.36356 5.40067 5.41507 5.55942 5.57853 5.75259 5.76360 5.81254 6.00101 6.06240 6.15410 6.25138 6.30943 6.40786 6.52317 6.60106 6.72986 6.80258 6.89650 7.69951 7.78294 7.92460 8.25898 8.39315 8.84880 9.63887 10.00111 11.14289 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.003412 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.307322 B = 8203.504001 C = 8695.010059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 C -0.184 4.184 4 C -0.237 4.237 5 C 0.589 3.411 6 O -0.546 6.546 7 N -0.707 5.707 8 C 0.163 3.837 9 H 0.090 0.910 10 C -0.140 4.140 11 C 0.124 3.876 12 N -0.602 5.602 13 C -0.267 4.267 14 H 0.086 0.914 15 C 0.028 3.972 16 N -0.907 5.907 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.271 1.271 20 H -0.302 1.302 21 C 0.123 3.877 22 C 0.080 3.920 23 H 0.061 0.939 24 O -0.569 6.569 25 C 0.073 3.927 26 C -0.081 4.081 27 O -0.177 6.177 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.398 0.602 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.264 0.736 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.376 0.624 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 -15.562 -7.236 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.241 4.241 5 C 0.376 3.624 6 O -0.425 6.425 7 N -0.356 5.356 8 C 0.059 3.941 9 H 0.108 0.892 10 C -0.180 4.180 11 C -0.001 4.001 12 N -0.328 5.328 13 C -0.395 4.395 14 H 0.104 0.896 15 C -0.172 4.172 16 N -0.549 5.549 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.196 1.196 20 H -0.230 1.230 21 C -0.004 4.004 22 C 0.019 3.981 23 H 0.079 0.921 24 O -0.374 6.374 25 C 0.020 3.980 26 C -0.137 4.137 27 O -0.074 6.074 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.173 0.827 32 H 0.231 0.769 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.222 0.778 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.535 -16.731 -6.967 23.870 hybrid contribution 0.253 0.447 0.060 0.517 sum -15.282 -16.284 -6.906 23.375 Atomic orbital electron populations 1.20321 0.84752 1.04175 1.03618 1.22206 0.93946 0.83737 1.06686 1.22592 0.90860 0.99477 1.07393 1.21204 0.93926 0.93307 1.15702 1.17163 0.87233 0.81988 0.75970 1.90746 1.28719 1.71874 1.51182 1.45811 1.09975 1.05450 1.74354 1.20957 0.86599 0.89544 0.96995 0.89229 1.22495 1.00019 1.00609 0.94904 1.21530 0.93851 0.86760 0.98002 1.44335 1.74443 1.02519 1.11458 1.18875 1.12707 0.86973 1.20896 0.89650 1.25321 0.97653 0.96590 0.97637 1.69816 1.33353 1.31802 1.19930 0.86986 0.81917 0.81354 0.78324 1.21143 1.19599 1.22991 1.21565 0.92457 0.98430 0.87923 1.22725 0.97268 0.95409 0.82706 0.92134 1.86487 1.87108 1.35421 1.28342 1.22774 0.82781 0.94112 0.98336 1.20609 0.92174 0.96511 1.04394 1.83681 1.16235 1.35625 1.71850 0.90025 0.90518 0.89164 0.82682 0.76857 0.91318 0.91444 0.95205 0.90089 0.92599 0.91184 0.94814 0.77767 0.89387 0.90599 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.18 7.28 -35.74 -0.26 -0.44 16 3 C -0.18 -2.03 10.48 -37.46 -0.39 -2.42 16 4 C -0.24 -3.25 6.31 -103.28 -0.65 -3.91 16 5 C 0.59 9.48 7.78 -12.54 -0.10 9.38 16 6 O -0.55 -10.21 14.51 5.26 0.08 -10.14 16 7 N -0.71 -10.65 4.91 -54.85 -0.27 -10.92 16 8 C 0.16 2.81 2.11 -67.89 -0.14 2.67 16 9 H 0.09 1.74 7.58 -51.92 -0.39 1.35 16 10 C -0.14 -2.61 5.67 -26.38 -0.15 -2.76 16 11 C 0.12 2.75 4.23 -3.48 -0.01 2.74 16 12 N -0.60 -14.01 2.74 -172.05 -0.47 -14.48 16 13 C -0.27 -7.27 10.03 -15.06 -0.15 -7.42 16 14 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.03 0.79 5.24 -17.43 -0.09 0.70 16 16 N -0.91 -27.40 13.97 55.49 0.78 -26.62 16 17 Si 0.88 22.39 24.35 -169.99 -4.14 18.25 16 18 H -0.28 -6.92 6.40 56.52 0.36 -6.56 16 19 H -0.27 -6.83 6.93 56.52 0.39 -6.44 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 C 0.12 2.35 6.14 -3.71 -0.02 2.33 16 22 C 0.08 1.29 3.14 -26.61 -0.08 1.21 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 O -0.57 -8.07 13.16 -35.23 -0.46 -8.53 16 25 C 0.07 0.92 7.37 -34.96 -0.26 0.66 16 26 C -0.08 -0.84 9.89 36.01 0.36 -0.49 16 27 O -0.18 -2.07 10.52 7.67 0.08 -1.99 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.16 1.35 7.74 -52.49 -0.41 0.94 16 32 H 0.40 5.07 7.77 -40.82 -0.32 4.76 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.67 7.21 -51.93 -0.37 0.29 16 36 H 0.08 1.94 4.51 -51.93 -0.23 1.71 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.38 3.74 9.08 45.56 0.41 4.15 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 1.33 6.49 -51.93 -0.34 0.99 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -33.84 348.63 -6.22 -40.05 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.47 Total: 6.92 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.59 Total: 2.20 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.03 Total: -52.02 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.31 Total: -20.66 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.84 -6.22 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090063257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.844 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds