Wall clock time and date at job start Fri Apr 10 2020 17:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34179 * 125.43830 * 2 1 4 4 C 1.47013 * 105.95861 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19550 * 179.97438 * 4 3 2 6 6 O 1.21614 * 120.00282 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99907 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00322 * 180.02562 * 7 5 4 9 9 H 1.09011 * 109.45700 * 35.02501 * 8 7 5 10 10 C 1.53038 * 109.44744 * 275.06385 * 8 7 5 11 11 C 1.53630 * 109.24196 * 178.49331 * 10 8 7 12 12 N 1.46926 * 108.53931 * 54.85639 * 11 10 8 13 13 C 1.36941 * 120.63137 * 126.37040 * 12 11 10 14 14 H 1.07996 * 119.99901 * 209.38924 * 13 12 11 15 15 C 1.38808 * 119.99647 * 29.39389 * 13 12 11 16 16 N 1.31626 * 119.99546 * 199.00867 * 15 13 12 17 17 Si 1.86798 * 120.00431 * 19.00803 * 15 13 12 18 18 H 1.48502 * 109.46809 * 273.02565 * 17 15 13 19 19 H 1.48501 * 109.46895 * 33.02750 * 17 15 13 20 20 H 1.48495 * 109.47341 * 153.02960 * 17 15 13 21 21 C 1.46931 * 118.73889 * 306.08807 * 12 11 10 22 22 C 1.53040 * 109.46295 * 154.99699 * 8 7 5 23 23 H 1.09005 * 109.49511 * 61.42363 * 22 8 7 24 24 O 1.42893 * 109.49964 * 301.32603 * 22 8 7 25 25 C 1.36423 * 105.61432 * 0.22085 * 4 3 2 26 26 C 1.50700 * 125.80227 * 179.75487 * 25 4 3 27 27 O 1.33648 * 108.39291 * 359.63565 * 25 4 3 28 28 H 1.08997 * 109.47208 * 90.00285 * 1 2 3 29 29 H 1.08999 * 109.46411 * 210.00405 * 1 2 3 30 30 H 1.08996 * 109.47161 * 329.99607 * 1 2 3 31 31 H 1.08002 * 127.02155 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99850 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.49571 * 298.56538 * 10 8 7 34 34 H 1.08993 * 109.50172 * 58.63364 * 10 8 7 35 35 H 1.08993 * 109.74094 * 295.11769 * 11 10 8 36 36 H 1.09000 * 109.66348 * 174.54685 * 11 10 8 37 37 H 0.97002 * 119.99392 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.58620 * 173.65277 * 21 12 11 39 39 H 1.08999 * 109.58655 * 293.93482 * 21 12 11 40 40 H 0.96701 * 114.00091 * 180.16633 * 24 22 8 41 41 H 1.08998 * 109.47163 * 89.99751 * 26 25 4 42 42 H 1.09004 * 109.47011 * 210.00440 * 26 25 4 43 43 H 1.09006 * 109.46991 * 330.00288 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6030 -0.0006 5 6 4.9025 1.4126 -0.0014 6 8 5.9892 0.8667 -0.0023 7 7 4.8243 2.7581 -0.0011 8 6 6.0483 3.5630 -0.0024 9 1 6.8135 3.0594 -0.5933 10 6 6.5458 3.7363 1.4345 11 6 7.8496 4.5488 1.4244 12 7 7.6075 5.8117 0.7135 13 6 7.9063 7.0117 1.3017 14 1 7.3397 7.8946 1.0451 15 6 8.9373 7.0933 2.2274 16 7 8.9957 8.1116 3.0594 17 14 10.2420 5.7580 2.2926 18 1 9.7810 4.6584 3.1779 19 1 10.4761 5.2276 0.9254 20 1 11.5058 6.3263 2.8263 21 6 7.0447 5.7623 -0.6428 22 6 5.7551 4.9360 -0.6117 23 1 5.0080 5.4502 -0.0070 24 8 5.2617 4.7716 -1.9426 25 6 3.5790 -0.7582 -0.0060 26 6 4.7391 -1.7201 -0.0139 27 8 2.2853 -1.0934 -0.0004 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9595 2.1230 -0.0004 32 1 3.9575 3.1935 -0.0007 33 1 5.7912 4.2619 2.0198 34 1 6.7316 2.7572 1.8758 35 1 8.6303 3.9856 0.9133 36 1 8.1586 4.7592 2.4483 37 1 9.7165 8.1687 3.7061 38 1 6.8225 6.7736 -0.9833 39 1 7.7623 5.2983 -1.3195 40 1 5.0567 5.6032 -2.3916 41 1 5.0222 -1.9563 1.0118 42 1 4.4489 -2.6349 -0.5307 43 1 5.5852 -1.2647 -0.5287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090063257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:54 Heat of formation + Delta-G solvation = -78.088982 kcal Electronic energy + Delta-G solvation = -25908.441548 eV Core-core repulsion = 22147.791292 eV Total energy + Delta-G solvation = -3760.650256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62049 -41.02700 -39.45488 -37.12951 -35.84341 -34.35112 -33.86344 -33.84721 -31.92419 -30.79343 -30.21551 -27.26101 -25.99313 -24.44472 -24.29431 -23.37284 -21.91323 -21.56178 -20.43574 -18.96837 -18.24669 -18.07272 -17.67147 -17.50784 -16.78693 -16.68322 -16.19200 -15.89102 -15.55624 -15.34907 -14.94634 -14.69154 -14.42171 -14.32639 -14.15549 -14.03851 -13.84163 -13.80675 -13.66790 -13.46884 -13.24899 -13.18014 -12.96359 -12.68544 -12.49674 -12.17652 -11.91121 -11.65860 -11.49372 -11.17232 -11.07122 -10.83059 -10.67865 -10.10015 -9.37151 -9.00174 -8.20552 -5.56504 0.29242 1.02183 1.28161 1.39586 1.47469 1.69768 2.15924 2.29545 2.37955 2.91439 3.10337 3.33367 3.48949 3.71220 3.80552 3.85957 3.98575 4.07906 4.21826 4.25709 4.29322 4.43646 4.52623 4.55602 4.58423 4.68255 4.69005 4.74900 4.78645 4.84213 4.87909 4.94387 5.01188 5.03893 5.19650 5.24118 5.39939 5.46136 5.82149 6.03693 6.09625 6.53559 6.78207 6.90773 7.19463 7.54323 7.95265 8.98676 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.003412 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.307322 B = 8203.504001 C = 8695.010059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.195 4.195 4 C -0.264 4.264 5 C 0.585 3.415 6 O -0.579 6.579 7 N -0.697 5.697 8 C 0.169 3.831 9 H 0.068 0.932 10 C -0.127 4.127 11 C 0.121 3.879 12 N -0.614 5.614 13 C -0.250 4.250 14 H 0.064 0.936 15 C -0.025 4.025 16 N -0.951 5.951 17 Si 0.937 3.063 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.308 1.308 21 C 0.119 3.881 22 C 0.101 3.899 23 H 0.071 0.929 24 O -0.569 6.569 25 C 0.066 3.934 26 C -0.080 4.080 27 O -0.181 6.181 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.177 0.823 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.263 0.737 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.397 0.603 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 -17.054 -8.223 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.213 4.213 4 C -0.269 4.269 5 C 0.375 3.625 6 O -0.461 6.461 7 N -0.346 5.346 8 C 0.064 3.936 9 H 0.086 0.914 10 C -0.167 4.167 11 C -0.004 4.004 12 N -0.339 5.339 13 C -0.379 4.379 14 H 0.081 0.919 15 C -0.221 4.221 16 N -0.597 5.597 17 Si 0.766 3.234 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.236 1.236 21 C -0.007 4.007 22 C 0.040 3.960 23 H 0.089 0.911 24 O -0.376 6.376 25 C 0.013 3.987 26 C -0.136 4.136 27 O -0.078 6.078 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.194 0.806 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.247 0.753 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.955 -18.237 -7.997 26.813 hybrid contribution 0.870 0.898 0.267 1.278 sum -17.085 -17.339 -7.730 25.540 Atomic orbital electron populations 1.20545 0.81620 1.05588 1.05010 1.23025 0.95570 0.82928 1.04702 1.22843 0.89520 1.00929 1.08055 1.21185 0.94172 0.93810 1.17685 1.17536 0.87660 0.82200 0.75149 1.90726 1.30184 1.72467 1.52725 1.45604 1.09816 1.05144 1.74065 1.20689 0.87073 0.90270 0.95606 0.91399 1.22303 0.98305 0.99917 0.96210 1.21489 0.95604 0.86670 0.96644 1.44414 1.74707 1.01581 1.13239 1.18868 1.11438 0.87781 1.19823 0.91858 1.25857 0.99600 0.98576 0.98058 1.69921 1.34297 1.34100 1.21366 0.86117 0.79374 0.79508 0.78406 1.19826 1.19451 1.23646 1.21754 0.93610 0.99711 0.85582 1.22285 0.95824 0.93960 0.83969 0.91139 1.86464 1.86664 1.37199 1.27275 1.23093 0.83601 0.94239 0.97734 1.20620 0.91013 0.97003 1.04924 1.83710 1.15936 1.36432 1.71709 0.88500 0.89552 0.87304 0.80580 0.75279 0.90891 0.91364 0.95413 0.92106 0.92794 0.90307 0.94890 0.75262 0.88657 0.88130 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.40 71.24 0.74 0.17 16 2 C -0.01 -0.25 7.28 24.76 0.18 -0.07 16 3 C -0.19 -3.83 10.48 23.65 0.25 -3.58 16 4 C -0.26 -6.93 6.31 -18.99 -0.12 -7.05 16 5 C 0.59 18.38 7.78 86.65 0.67 19.06 16 6 O -0.58 -21.72 14.51 -4.08 -0.06 -21.78 16 7 N -0.70 -19.86 4.91 -445.71 -2.19 -22.05 16 8 C 0.17 5.59 2.11 45.02 0.10 5.68 16 9 H 0.07 2.59 7.58 -2.38 -0.02 2.57 16 10 C -0.13 -4.62 5.67 30.82 0.17 -4.45 16 11 C 0.12 5.30 4.23 86.51 0.37 5.66 16 12 N -0.61 -28.15 2.74 -698.24 -1.91 -30.07 16 13 C -0.25 -13.69 10.03 84.03 0.84 -12.85 16 14 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 15 C -0.03 -1.45 5.24 84.86 0.45 -1.01 16 16 N -0.95 -58.70 13.97 21.65 0.30 -58.40 16 17 Si 0.94 46.79 24.35 68.60 1.67 48.46 16 18 H -0.27 -12.89 6.40 99.48 0.64 -12.25 16 19 H -0.27 -13.24 6.93 99.48 0.69 -12.55 16 20 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 21 C 0.12 4.37 6.14 86.36 0.53 4.90 16 22 C 0.10 3.03 3.14 30.67 0.10 3.13 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 O -0.57 -14.44 13.16 -148.98 -1.96 -16.40 16 25 C 0.07 1.60 7.37 25.26 0.19 1.78 16 26 C -0.08 -1.59 9.89 71.24 0.70 -0.89 16 27 O -0.18 -3.87 10.52 4.53 0.05 -3.83 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.18 2.52 7.74 -2.91 -0.02 2.49 16 32 H 0.41 9.47 7.77 -92.71 -0.72 8.75 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.03 1.23 7.21 -2.39 -0.02 1.21 16 36 H 0.06 2.89 4.51 -2.39 -0.01 2.88 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.40 6.52 9.08 -74.06 -0.67 5.84 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.09 2.21 6.49 -2.38 -0.02 2.20 16 Total: -1.00 -73.82 348.63 0.63 -73.19 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.43 Total: 20.37 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.16 Total: 10.49 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.80 Total: -110.51 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.97 Total: -42.00 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.67 Total: 48.46 kcal Total: -73.82 0.63 -73.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090063257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.899 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds