Wall clock time and date at job start Fri Apr 10 2020 17:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34181 * 125.44053 * 2 1 4 4 C 1.47017 * 105.95768 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19350 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00030 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99970 * 0.03882 * 5 4 3 8 8 C 1.46496 * 119.99703 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.46562 * 324.99827 * 8 7 5 10 10 C 1.53034 * 109.46180 * 84.97949 * 8 7 5 11 11 C 1.53188 * 109.31404 * 181.39810 * 10 8 7 12 12 N 1.46927 * 108.76663 * 305.33612 * 11 10 8 13 13 C 1.36932 * 120.63477 * 233.63967 * 12 11 10 14 14 H 1.08002 * 120.00074 * 27.66766 * 13 12 11 15 15 C 1.38809 * 119.99869 * 207.66128 * 13 12 11 16 16 N 1.31617 * 120.00281 * 17.36776 * 15 13 12 17 17 Si 1.86801 * 120.00130 * 197.36012 * 15 13 12 18 18 H 1.48503 * 109.46976 * 60.00773 * 17 15 13 19 19 H 1.48496 * 109.47335 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47305 * 300.00457 * 17 15 13 21 21 C 1.46933 * 118.73251 * 53.61903 * 12 11 10 22 22 C 1.53049 * 109.45691 * 205.02715 * 8 7 5 23 23 H 1.09001 * 109.49553 * 58.63525 * 22 8 7 24 24 O 1.42897 * 109.49857 * 298.56759 * 22 8 7 25 25 C 1.36417 * 105.61564 * 359.97438 * 4 3 2 26 26 C 1.50695 * 125.80402 * 179.73869 * 25 4 3 27 27 O 1.33659 * 108.39406 * 0.02562 * 25 4 3 28 28 H 1.09003 * 109.46957 * 90.00382 * 1 2 3 29 29 H 1.08997 * 109.47113 * 210.00286 * 1 2 3 30 30 H 1.09002 * 109.47215 * 330.00684 * 1 2 3 31 31 H 1.07999 * 127.01663 * 359.97127 * 3 2 1 32 32 H 0.97001 * 119.99470 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.49714 * 301.33268 * 10 8 7 34 34 H 1.08996 * 109.50432 * 61.42545 * 10 8 7 35 35 H 1.09006 * 109.58753 * 185.56192 * 11 10 8 36 36 H 1.09000 * 109.59940 * 65.13026 * 11 10 8 37 37 H 0.97004 * 120.00652 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.58657 * 186.60680 * 21 12 11 39 39 H 1.08999 * 109.70469 * 66.24824 * 21 12 11 40 40 H 0.96703 * 113.99649 * 179.97438 * 24 22 8 41 41 H 1.08995 * 109.47672 * 90.00014 * 26 25 4 42 42 H 1.09002 * 109.47135 * 210.00382 * 26 25 4 43 43 H 1.09000 * 109.46894 * 329.99973 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9892 0.8665 0.0005 7 7 4.8244 2.7580 0.0002 8 6 6.0485 3.5627 -0.0006 9 1 6.8148 3.0589 0.5884 10 6 6.5430 3.7371 -1.4383 11 6 7.8419 4.5493 -1.4324 12 7 7.6067 5.8117 -0.7183 13 6 7.9036 7.0119 -1.3067 14 1 7.8799 7.1066 -2.3823 15 6 8.2351 8.1070 -0.5207 16 7 8.5980 7.9321 0.7323 17 14 8.1663 9.8290 -1.2414 18 1 6.7832 10.1201 -1.6970 19 1 8.5645 10.8155 -0.2053 20 1 9.0971 9.9205 -2.3949 21 6 7.0463 5.7616 0.6391 22 6 5.7566 4.9355 0.6098 23 1 5.3816 4.8097 1.6255 24 8 4.7758 5.6102 -0.1806 25 6 3.5790 -0.7582 0.0015 26 6 4.7389 -1.7202 -0.0031 27 8 2.2852 -1.0935 0.0009 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.9595 2.1230 -0.0004 32 1 3.9576 3.1934 0.0007 33 1 6.7284 2.7582 -1.8805 34 1 5.7875 4.2631 -2.0218 35 1 8.1454 4.7607 -2.4577 36 1 8.6245 3.9837 -0.9267 37 1 8.8300 8.6973 1.2815 38 1 6.8248 6.7728 0.9805 39 1 7.7631 5.2963 1.3156 40 1 4.5415 6.4887 0.1490 41 1 5.0231 -1.9518 1.0233 42 1 4.4482 -2.6374 -0.5154 43 1 5.5845 -1.2673 -0.5208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090063259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:59 Heat of formation + Delta-G solvation = -55.994005 kcal Electronic energy + Delta-G solvation = -25933.652648 eV Core-core repulsion = 22173.960502 eV Total energy + Delta-G solvation = -3759.692146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.71757 -39.54938 -37.83101 -34.78530 -34.32609 -33.33618 -32.98632 -31.98198 -29.88182 -29.20939 -28.97039 -25.71673 -24.85036 -23.23834 -22.28646 -21.82510 -20.67138 -19.80500 -18.99819 -17.39654 -17.06171 -16.62323 -16.00942 -15.69078 -15.42695 -14.95645 -14.52870 -14.33577 -13.87443 -13.81331 -13.67073 -13.55883 -13.33708 -13.13697 -13.03536 -12.84239 -12.71070 -12.57321 -12.10167 -11.98059 -11.70928 -11.25427 -11.12189 -10.78864 -10.58855 -10.46156 -10.17947 -10.04974 -9.86116 -9.80123 -9.59388 -9.17289 -8.70269 -8.52312 -8.42892 -6.68093 -5.81250 -3.21598 1.31194 1.88679 2.55846 3.37050 3.43126 3.44894 3.46285 3.51113 4.29030 4.48246 4.66546 4.75366 4.88732 4.98747 5.13063 5.14963 5.28493 5.31860 5.38904 5.41228 5.44258 5.48120 5.59514 5.62042 5.79813 5.97537 6.04842 6.05366 6.20467 6.23884 6.32605 6.48915 6.58889 6.80921 6.89091 6.92569 7.01371 7.18398 7.43687 7.77361 7.83309 8.24801 8.43144 8.47348 9.18185 9.81484 10.38472 11.27582 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028041 B = 0.003128 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.315710 B = 8948.196697 C = 9511.041284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.018 4.018 3 C -0.184 4.184 4 C -0.237 4.237 5 C 0.585 3.415 6 O -0.547 6.547 7 N -0.710 5.710 8 C 0.163 3.837 9 H 0.091 0.909 10 C -0.136 4.136 11 C 0.148 3.852 12 N -0.583 5.583 13 C -0.243 4.243 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.908 5.908 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.146 3.854 22 C 0.073 3.927 23 H 0.043 0.957 24 O -0.560 6.560 25 C 0.071 3.929 26 C -0.080 4.080 27 O -0.177 6.177 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.401 0.599 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.254 0.746 38 H 0.096 0.904 39 H 0.028 0.972 40 H 0.375 0.625 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -15.026 0.904 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.241 4.241 5 C 0.372 3.628 6 O -0.427 6.427 7 N -0.359 5.359 8 C 0.060 3.940 9 H 0.109 0.891 10 C -0.176 4.176 11 C 0.021 3.979 12 N -0.305 5.305 13 C -0.373 4.373 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.553 5.553 17 Si 0.733 3.267 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.209 1.209 21 C 0.019 3.981 22 C 0.012 3.988 23 H 0.061 0.939 24 O -0.365 6.365 25 C 0.019 3.981 26 C -0.136 4.136 27 O -0.074 6.074 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.174 0.826 32 H 0.236 0.764 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.221 0.779 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.497 -16.085 0.666 21.664 hybrid contribution -0.494 1.930 0.091 1.994 sum -14.991 -14.155 0.757 20.632 Atomic orbital electron populations 1.20318 0.84779 1.04121 1.03631 1.22200 0.93932 0.83742 1.06773 1.22624 0.90896 0.99528 1.07282 1.21249 0.94005 0.93318 1.15578 1.17223 0.87193 0.82162 0.76201 1.90740 1.28679 1.71930 1.51371 1.45999 1.10666 1.05246 1.73987 1.21016 0.85803 0.88912 0.98292 0.89110 1.22302 1.00229 0.99588 0.95503 1.20897 0.92813 0.87488 0.96656 1.43869 1.71695 1.00951 1.13974 1.19147 1.39886 0.86770 0.91482 0.91707 1.25008 0.99420 0.98821 0.96633 1.70010 1.48149 1.29471 1.07632 0.86353 0.78001 0.84289 0.78047 1.21056 1.21741 1.20930 1.21432 0.89642 0.99820 0.87253 1.22846 0.92304 0.91970 0.91711 0.93922 1.86349 1.60064 1.33926 1.56176 1.22774 0.82768 0.94122 0.98476 1.20600 0.92197 0.96486 1.04345 1.83679 1.16248 1.35622 1.71892 0.90028 0.90552 0.89178 0.82623 0.76434 0.92868 0.91253 0.92460 0.96210 0.93600 0.88629 0.95441 0.77867 0.89445 0.90638 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.00 0.37 -0.07 16 2 C -0.02 -0.19 7.28 -35.74 -0.26 -0.45 16 3 C -0.18 -2.12 10.48 -37.45 -0.39 -2.51 16 4 C -0.24 -3.33 6.31 -103.28 -0.65 -3.98 16 5 C 0.58 9.60 7.78 -12.54 -0.10 9.50 16 6 O -0.55 -10.30 14.51 5.27 0.08 -10.22 16 7 N -0.71 -11.28 5.05 -54.86 -0.28 -11.55 16 8 C 0.16 2.99 2.20 -67.89 -0.15 2.84 16 9 H 0.09 1.79 7.57 -51.93 -0.39 1.39 16 10 C -0.14 -2.64 5.51 -26.62 -0.15 -2.79 16 11 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 12 N -0.58 -14.43 2.94 -172.31 -0.51 -14.94 16 13 C -0.24 -6.59 9.58 -15.06 -0.14 -6.74 16 14 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 -0.03 4.91 -17.43 -0.09 -0.11 16 16 N -0.91 -25.68 11.19 55.49 0.62 -25.06 16 17 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 C 0.15 3.33 4.95 -3.71 -0.02 3.31 16 22 C 0.07 1.34 3.38 -26.61 -0.09 1.25 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 O -0.56 -9.98 12.08 -35.23 -0.43 -10.41 16 25 C 0.07 0.91 7.37 -34.97 -0.26 0.65 16 26 C -0.08 -0.84 9.88 36.00 0.36 -0.48 16 27 O -0.18 -2.11 10.52 7.65 0.08 -2.03 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.48 7.74 -52.49 -0.41 1.07 16 32 H 0.40 5.71 7.43 -40.82 -0.30 5.41 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.42 7.61 -51.93 -0.40 1.02 16 35 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.37 5.79 9.08 45.56 0.41 6.20 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.11 1.34 6.50 -51.93 -0.34 1.00 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -32.08 353.14 -7.23 -39.31 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.50 Total: 9.59 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.59 Total: 3.65 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.16 Total: -51.55 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.27 Total: -22.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.08 -7.23 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090063259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.685 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds