Wall clock time and date at job start Fri Apr 10 2020 17:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34176 * 125.43800 * 2 1 4 4 C 1.47023 * 105.95387 * 180.11993 * 3 2 1 5 5 C 1.47380 * 127.19151 * 179.88713 * 4 3 2 6 6 O 1.21619 * 119.99611 * 179.68595 * 5 4 3 7 7 N 1.34769 * 120.00318 * 359.68176 * 5 4 3 8 8 C 1.46500 * 120.00484 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.44491 * 324.97088 * 8 7 5 10 10 C 1.53038 * 109.45985 * 84.92971 * 8 7 5 11 11 C 1.53184 * 109.31420 * 181.38794 * 10 8 7 12 12 N 1.46931 * 108.77900 * 305.36680 * 11 10 8 13 13 C 1.36930 * 120.63477 * 233.88628 * 12 11 10 14 14 H 1.07998 * 120.00455 * 151.58501 * 13 12 11 15 15 C 1.38815 * 119.99816 * 331.57924 * 13 12 11 16 16 N 1.31621 * 119.99984 * 343.18964 * 15 13 12 17 17 Si 1.86800 * 120.00122 * 163.18643 * 15 13 12 18 18 H 1.48503 * 109.47174 * 60.00002 * 17 15 13 19 19 H 1.48497 * 109.47073 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47370 * 300.00248 * 17 15 13 21 21 C 1.46927 * 118.73501 * 53.60671 * 12 11 10 22 22 C 1.53034 * 109.46228 * 205.00287 * 8 7 5 23 23 H 1.08996 * 109.52407 * 298.57795 * 22 8 7 24 24 O 1.42900 * 109.49915 * 58.66530 * 22 8 7 25 25 C 1.36411 * 105.61478 * 359.62511 * 4 3 2 26 26 C 1.50700 * 125.80552 * 180.22476 * 25 4 3 27 27 O 1.33656 * 108.39761 * 0.23025 * 25 4 3 28 28 H 1.08998 * 109.47508 * 180.32120 * 1 2 3 29 29 H 1.08994 * 109.47623 * 300.32435 * 1 2 3 30 30 H 1.09004 * 109.47068 * 60.32317 * 1 2 3 31 31 H 1.08002 * 127.02427 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99987 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.50124 * 301.34606 * 10 8 7 34 34 H 1.09004 * 109.49546 * 61.40841 * 10 8 7 35 35 H 1.09002 * 109.59146 * 185.58364 * 11 10 8 36 36 H 1.09003 * 109.58804 * 65.15780 * 11 10 8 37 37 H 0.97002 * 120.00123 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.58465 * 66.17608 * 21 12 11 39 39 H 1.08997 * 109.58427 * 186.46138 * 21 12 11 40 40 H 0.96699 * 113.99825 * 179.83926 * 24 22 8 41 41 H 1.08994 * 109.47215 * 89.99921 * 26 25 4 42 42 H 1.08998 * 109.47775 * 210.00075 * 26 25 4 43 43 H 1.09000 * 109.46920 * 330.00011 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0030 5 6 4.9025 1.4125 -0.0064 6 8 5.9892 0.8664 -0.0028 7 7 4.8244 2.7579 -0.0136 8 6 6.0485 3.5628 -0.0164 9 1 6.8134 3.0620 0.5771 10 6 6.5462 3.7288 -1.4540 11 6 7.8447 4.5413 -1.4500 12 7 7.6081 5.8076 -0.7433 13 6 7.9014 7.0048 -1.3397 14 1 7.3471 7.8920 -1.0713 15 6 8.9112 7.0782 -2.2894 16 7 9.7973 6.1095 -2.3840 17 14 9.0126 8.5516 -3.4331 18 1 9.1835 9.7899 -2.6313 19 1 10.1720 8.3902 -4.3468 20 1 7.7631 8.6466 -4.2300 21 6 7.0451 5.7651 0.6131 22 6 5.7554 4.9387 0.5859 23 1 5.0083 5.4503 -0.0209 24 8 5.2618 4.7811 1.9177 25 6 3.5790 -0.7582 0.0041 26 6 4.7389 -1.7203 0.0092 27 8 2.2852 -1.0935 0.0057 28 1 -0.3634 -1.0276 0.0058 29 1 -0.3634 0.5188 0.8870 30 1 -0.3633 0.5088 -0.8929 31 1 1.9595 2.1230 0.0004 32 1 3.9576 3.1934 -0.0161 33 1 6.7324 2.7473 -1.8902 34 1 5.7915 4.2510 -2.0422 35 1 8.1503 4.7471 -2.4759 36 1 8.6264 3.9785 -0.9396 37 1 10.5032 6.1610 -3.0473 38 1 7.7614 5.3020 1.2917 39 1 6.8254 6.7783 0.9494 40 1 5.0568 5.6150 2.3624 41 1 5.0185 -1.9469 1.0380 42 1 4.4505 -2.6399 -0.4998 43 1 5.5867 -1.2699 -0.5070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090063260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:00 Heat of formation + Delta-G solvation = -81.783863 kcal Electronic energy + Delta-G solvation = -25811.961637 eV Core-core repulsion = 22051.151159 eV Total energy + Delta-G solvation = -3760.810478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.61305 -40.96035 -39.33885 -36.98932 -35.81135 -34.30852 -33.84943 -33.63194 -31.75712 -30.47768 -30.01390 -27.27657 -26.04241 -24.54990 -23.89206 -23.30798 -21.84464 -21.41751 -20.39612 -18.90491 -18.21732 -18.02539 -17.51242 -17.30357 -16.77607 -16.66441 -15.79870 -15.74284 -15.65178 -15.21358 -14.95139 -14.59901 -14.37895 -14.24039 -14.14488 -13.86836 -13.80837 -13.61662 -13.46789 -13.28835 -13.20880 -12.98819 -12.68543 -12.51371 -12.39359 -12.14904 -12.07656 -11.89473 -11.41615 -11.13242 -10.95364 -10.81953 -10.56436 -10.05328 -9.36181 -8.76774 -7.90579 -5.38783 0.30083 1.02888 1.48641 1.51230 1.58123 1.70629 2.18957 2.30991 2.49230 3.10950 3.26705 3.49824 3.61923 3.75189 3.83208 3.89088 4.04477 4.20579 4.26248 4.37323 4.44825 4.51979 4.55165 4.58471 4.66985 4.69475 4.77158 4.82883 4.89448 4.95366 5.01417 5.05225 5.10969 5.21881 5.35517 5.42821 5.48845 5.59336 5.64629 6.04404 6.33511 6.56028 6.87682 7.09042 7.22265 7.77168 8.30439 9.16841 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.003134 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.382773 B = 8931.248282 C = 9179.096742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.013 4.013 3 C -0.195 4.195 4 C -0.263 4.263 5 C 0.583 3.417 6 O -0.581 6.581 7 N -0.696 5.696 8 C 0.171 3.829 9 H 0.056 0.944 10 C -0.129 4.129 11 C 0.181 3.819 12 N -0.603 5.603 13 C -0.268 4.268 14 H 0.077 0.923 15 C -0.050 4.050 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.298 1.298 20 H -0.274 1.274 21 C 0.118 3.882 22 C 0.103 3.897 23 H 0.074 0.926 24 O -0.571 6.571 25 C 0.066 3.934 26 C -0.080 4.080 27 O -0.180 6.180 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.177 0.823 32 H 0.411 0.589 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.063 0.937 36 H -0.008 1.008 37 H 0.251 0.749 38 H 0.012 0.988 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 -10.401 5.511 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.061 4.061 3 C -0.214 4.214 4 C -0.268 4.268 5 C 0.372 3.628 6 O -0.464 6.464 7 N -0.345 5.345 8 C 0.066 3.934 9 H 0.075 0.925 10 C -0.169 4.169 11 C 0.055 3.945 12 N -0.328 5.328 13 C -0.398 4.398 14 H 0.095 0.905 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.800 3.200 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.200 1.200 21 C -0.008 4.008 22 C 0.042 3.958 23 H 0.091 0.909 24 O -0.378 6.378 25 C 0.013 3.987 26 C -0.136 4.136 27 O -0.077 6.077 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.195 0.805 32 H 0.247 0.753 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.010 0.990 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.095 0.905 40 H 0.246 0.754 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.199 -11.664 5.301 23.920 hybrid contribution 0.609 1.614 -0.509 1.799 sum -19.590 -10.050 4.792 22.533 Atomic orbital electron populations 1.20550 0.81498 1.05253 1.05417 1.23036 0.95598 0.82879 1.04608 1.22819 0.89403 1.01007 1.08170 1.21186 0.94148 0.93828 1.17613 1.17593 0.87707 0.82275 0.75218 1.90734 1.30369 1.72489 1.52771 1.45619 1.09790 1.05149 1.73987 1.20661 0.86628 0.90197 0.95870 0.92532 1.22329 0.99359 0.99672 0.95543 1.20534 0.91607 0.84861 0.97515 1.44228 1.74027 1.02526 1.12015 1.19538 1.12372 0.88509 1.19366 0.90514 1.25910 0.94909 1.00593 1.03162 1.70199 1.15548 1.35947 1.36505 0.85275 0.76869 0.79235 0.78644 1.19833 1.22396 1.20027 1.21689 0.93286 0.99053 0.86809 1.22305 0.95884 0.93923 0.83716 0.90852 1.86466 1.86690 1.37095 1.27576 1.23065 0.83624 0.94209 0.97848 1.20611 0.91025 0.97020 1.04918 1.83720 1.15862 1.36419 1.71686 0.89611 0.87751 0.87822 0.80536 0.75314 0.92525 0.91305 0.91863 0.98977 0.93994 0.97010 0.90455 0.75374 0.88619 0.88055 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 71.24 0.74 0.13 16 2 C -0.01 -0.24 7.28 24.76 0.18 -0.06 16 3 C -0.20 -4.08 10.48 23.65 0.25 -3.83 16 4 C -0.26 -7.41 6.31 -18.99 -0.12 -7.53 16 5 C 0.58 19.99 7.78 86.65 0.67 20.66 16 6 O -0.58 -23.95 14.51 -4.09 -0.06 -24.01 16 7 N -0.70 -21.85 4.91 -445.73 -2.19 -24.04 16 8 C 0.17 6.37 2.12 45.02 0.10 6.46 16 9 H 0.06 2.49 7.58 -2.38 -0.02 2.47 16 10 C -0.13 -5.27 5.65 30.67 0.17 -5.10 16 11 C 0.18 9.12 5.31 86.36 0.46 9.58 16 12 N -0.60 -30.02 2.99 -699.09 -2.09 -32.11 16 13 C -0.27 -14.33 9.58 84.04 0.81 -13.52 16 14 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 15 C -0.05 -2.76 4.92 84.86 0.42 -2.35 16 16 N -0.94 -55.79 11.20 21.65 0.24 -55.55 16 17 Si 0.97 43.96 29.59 68.60 2.03 45.99 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.12 4.77 6.14 86.36 0.53 5.30 16 22 C 0.10 3.39 3.14 30.67 0.10 3.49 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 O -0.57 -15.98 13.16 -148.98 -1.96 -17.94 16 25 C 0.07 1.69 7.37 25.26 0.19 1.87 16 26 C -0.08 -1.75 9.89 71.24 0.70 -1.04 16 27 O -0.18 -4.05 10.52 4.45 0.05 -4.01 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.18 2.72 7.74 -2.91 -0.02 2.69 16 32 H 0.41 10.35 7.77 -92.71 -0.72 9.63 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.06 3.54 6.06 -2.39 -0.01 3.53 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 2.82 7.93 -2.39 -0.02 2.81 16 40 H 0.40 7.25 9.08 -74.06 -0.67 6.58 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.09 2.39 6.49 -2.39 -0.02 2.37 16 Total: -1.00 -73.68 354.85 0.86 -72.82 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.35 Total: 24.77 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.19 Total: 14.06 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.04 Total: -111.70 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.97 Total: -45.95 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.68 0.86 -72.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090063260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.961 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds