Wall clock time and date at job start Fri Apr 10 2020 17:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35127 * 125.61564 * 2 1 4 4 C 1.40359 * 107.11724 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.64983 * 180.02562 * 4 3 2 6 6 C 1.36549 * 106.70708 * 0.02562 * 4 3 2 7 7 C 1.46657 * 125.98790 * 179.97438 * 6 4 3 8 8 O 1.21700 * 120.00082 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00036 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00427 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.44079 * 324.96534 * 10 9 7 12 12 C 1.53038 * 109.48907 * 84.91263 * 10 9 7 13 13 C 1.53185 * 109.34191 * 181.35799 * 12 10 9 14 14 N 1.46924 * 108.77598 * 305.38167 * 13 12 10 15 15 C 1.36938 * 120.63250 * 233.62791 * 14 13 12 16 16 H 1.08002 * 119.99599 * 152.60482 * 15 14 13 17 17 C 1.38809 * 119.99943 * 332.60984 * 15 14 13 18 18 N 1.31617 * 119.99772 * 159.36893 * 17 15 14 19 19 Si 1.86795 * 120.00139 * 339.36902 * 17 15 14 20 20 H 1.48496 * 109.47516 * 92.92968 * 19 17 15 21 21 H 1.48500 * 109.47259 * 212.93052 * 19 17 15 22 22 H 1.48507 * 109.47215 * 332.92869 * 19 17 15 23 23 C 1.46926 * 118.73861 * 53.60795 * 14 13 12 24 24 C 1.53040 * 109.46264 * 205.00306 * 10 9 7 25 25 H 1.08996 * 109.49425 * 298.59542 * 24 10 9 26 26 O 1.42896 * 109.49676 * 58.66036 * 24 10 9 27 27 O 1.33932 * 125.61429 * 180.29255 * 2 1 3 28 28 H 1.09005 * 109.46891 * 90.00234 * 1 2 3 29 29 H 1.08999 * 109.47046 * 209.99752 * 1 2 3 30 30 H 1.08990 * 109.47366 * 330.00219 * 1 2 3 31 31 H 1.08000 * 126.44193 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47289 * 269.96066 * 5 4 3 33 33 H 1.09004 * 109.47286 * 29.95522 * 5 4 3 34 34 H 1.09004 * 109.47837 * 149.95356 * 5 4 3 35 35 H 0.97008 * 120.00175 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.46906 * 61.40353 * 12 10 9 37 37 H 1.09001 * 109.51919 * 301.34151 * 12 10 9 38 38 H 1.09003 * 109.59080 * 185.59388 * 13 12 10 39 39 H 1.09006 * 109.58638 * 65.16993 * 13 12 10 40 40 H 0.97008 * 119.99985 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.59128 * 186.60633 * 23 14 13 42 42 H 1.08999 * 109.70633 * 66.25143 * 23 14 13 43 43 H 0.96704 * 113.99760 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5823 -0.7116 -0.0015 7 6 4.7415 -1.6101 -0.0029 8 8 5.8681 -1.1499 -0.0038 9 7 4.5590 -2.9454 -0.0032 10 6 5.7169 -3.8430 -0.0040 11 1 6.5190 -3.3999 -0.5944 12 6 6.1995 -4.0551 1.4327 13 6 7.4306 -4.9667 1.4250 14 7 7.0963 -6.2068 0.7115 15 6 7.2994 -7.4266 1.2997 16 1 6.6892 -8.2713 1.0157 17 6 8.2893 -7.5774 2.2610 18 7 8.2376 -8.5848 3.1064 19 14 9.6948 -6.3506 2.3547 20 1 9.3521 -5.2781 3.3228 21 1 10.9290 -7.0450 2.8017 22 1 9.9209 -5.7534 1.0139 23 6 6.5395 -6.1132 -0.6450 24 6 5.3184 -5.1888 -0.6141 25 1 4.5330 -5.6435 -0.0105 26 8 4.8399 -4.9860 -1.9452 27 8 2.2869 -1.0888 -0.0056 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 1.9612 2.1260 0.0004 32 1 5.1600 1.7221 -1.0279 33 1 4.6511 2.4523 0.5136 34 1 5.6684 0.9917 0.5137 35 1 3.6610 -3.3123 -0.0021 36 1 5.4060 -4.5202 2.0175 37 1 6.4614 -3.0937 1.8746 38 1 7.7182 -5.2010 2.4499 39 1 8.2543 -4.4640 0.9179 40 1 8.9296 -8.6904 3.7780 41 1 6.2391 -7.1040 -0.9859 42 1 7.2895 -5.7055 -1.3228 43 1 4.5692 -5.7987 -2.3939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090144438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:08 Heat of formation + Delta-G solvation = -50.398133 kcal Electronic energy + Delta-G solvation = -25981.057943 eV Core-core repulsion = 22221.608452 eV Total energy + Delta-G solvation = -3759.449491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.87748 -39.77572 -38.11654 -35.66204 -34.81810 -33.98163 -32.72628 -32.04794 -30.39192 -29.27130 -28.13909 -27.31928 -24.99237 -22.78563 -22.42037 -21.67543 -21.09103 -20.12782 -19.51200 -18.10284 -17.15889 -16.68553 -16.67175 -16.16666 -15.50862 -15.02017 -14.59748 -14.53668 -14.30606 -13.90813 -13.83682 -13.43450 -13.35973 -13.19997 -13.12119 -12.84858 -12.77848 -12.53937 -12.52449 -12.26852 -12.02538 -11.78875 -11.57340 -11.21295 -11.03206 -10.27060 -10.20060 -10.09016 -9.89576 -9.82079 -9.76629 -9.55120 -8.96147 -8.68632 -8.51304 -7.09236 -6.01694 -3.39796 0.95001 2.13714 2.49094 3.20524 3.23896 3.30917 3.47379 3.50732 4.25791 4.35453 4.48317 4.61968 4.72914 4.88716 4.99608 5.06283 5.12178 5.19351 5.31171 5.33879 5.38325 5.42815 5.53974 5.61632 5.65971 5.73854 5.77838 5.91854 5.95658 6.04664 6.19364 6.26859 6.31011 6.37459 6.50282 6.55579 6.61287 6.73985 6.80328 7.56779 7.76020 7.90013 8.18062 8.24500 8.83775 9.63473 9.98570 11.13667 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.003478 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.374452 B = 8048.341681 C = 8540.996487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 C -0.224 4.224 4 C -0.088 4.088 5 C -0.094 4.094 6 C -0.081 4.081 7 C 0.602 3.398 8 O -0.521 6.521 9 N -0.704 5.704 10 C 0.162 3.838 11 H 0.092 0.908 12 C -0.141 4.141 13 C 0.126 3.874 14 N -0.602 5.602 15 C -0.267 4.267 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.269 1.269 23 C 0.124 3.876 24 C 0.079 3.921 25 H 0.062 0.938 26 O -0.569 6.569 27 O -0.161 6.161 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.264 0.736 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.134 17.254 -7.307 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.243 4.243 4 C -0.091 4.091 5 C -0.151 4.151 6 C -0.133 4.133 7 C 0.388 3.612 8 O -0.399 6.399 9 N -0.353 5.353 10 C 0.058 3.942 11 H 0.110 0.890 12 C -0.182 4.182 13 C 0.000 4.000 14 N -0.327 5.327 15 C -0.395 4.395 16 H 0.104 0.896 17 C -0.173 4.173 18 N -0.547 5.547 19 Si 0.711 3.289 20 H -0.214 1.214 21 H -0.230 1.230 22 H -0.194 1.194 23 C -0.003 4.003 24 C 0.018 3.982 25 H 0.080 0.920 26 O -0.374 6.374 27 O -0.058 6.058 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.171 0.829 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.187 17.744 -7.039 23.784 hybrid contribution 0.204 -0.006 0.061 0.213 sum -13.983 17.739 -6.979 23.641 Atomic orbital electron populations 1.20398 0.84636 1.04447 1.03890 1.22742 0.94233 0.84170 1.02409 1.21446 0.91909 0.99687 1.11252 1.20601 0.96323 0.92224 0.99915 1.20421 0.93981 0.97821 1.02852 1.21952 0.81837 0.94220 1.15250 1.16511 0.85941 0.81660 0.77078 1.90845 1.21964 1.75905 1.51231 1.45958 1.10753 1.05124 1.73416 1.21028 0.87947 0.88009 0.97213 0.88985 1.22446 1.00502 1.00472 0.94767 1.21392 0.93979 0.86694 0.97900 1.44323 1.74607 1.02353 1.11393 1.18883 1.14090 0.87390 1.19093 0.89554 1.25262 0.97969 0.96596 0.97428 1.69830 1.34736 1.32163 1.18019 0.86984 0.83072 0.80509 0.78327 1.21393 1.22967 1.19360 1.21548 0.93087 0.97782 0.87865 1.22731 0.97489 0.95158 0.82778 0.92010 1.86483 1.86090 1.36521 1.28285 1.84006 1.15969 1.34714 1.71083 0.89642 0.90123 0.89042 0.82862 0.90873 0.91627 0.89350 0.76320 0.91191 0.91316 0.90260 0.95027 0.92614 0.91113 0.94740 0.77664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.41 36.01 0.37 -0.06 16 2 C 0.02 0.17 7.31 -35.41 -0.26 -0.09 16 3 C -0.22 -2.30 10.73 -39.89 -0.43 -2.73 16 4 C -0.09 -1.12 6.20 -104.44 -0.65 -1.77 16 5 C -0.09 -1.08 9.81 36.00 0.35 -0.73 16 6 C -0.08 -1.16 7.13 -36.80 -0.26 -1.42 16 7 C 0.60 9.81 7.75 -12.86 -0.10 9.71 16 8 O -0.52 -9.71 14.40 5.19 0.07 -9.64 16 9 N -0.70 -10.81 4.91 -55.08 -0.27 -11.08 16 10 C 0.16 2.78 2.12 -67.89 -0.14 2.64 16 11 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 12 C -0.14 -2.63 5.65 -26.62 -0.15 -2.78 16 13 C 0.13 2.77 4.20 -3.72 -0.02 2.76 16 14 N -0.60 -13.94 2.77 -172.32 -0.48 -14.42 16 15 C -0.27 -7.25 10.03 -15.06 -0.15 -7.40 16 16 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.03 0.77 5.23 -17.43 -0.09 0.68 16 18 N -0.91 -27.32 13.97 55.49 0.78 -26.55 16 19 Si 0.88 22.28 24.34 -169.99 -4.14 18.14 16 20 H -0.29 -7.01 6.62 56.52 0.37 -6.64 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.27 -6.72 6.64 56.52 0.38 -6.34 16 23 C 0.12 2.36 6.14 -3.71 -0.02 2.33 16 24 C 0.08 1.28 3.14 -26.61 -0.08 1.20 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 O -0.57 -8.12 13.16 -35.23 -0.46 -8.58 16 27 O -0.16 -2.05 10.40 4.99 0.05 -2.00 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.19 6.45 -51.93 -0.33 0.85 16 35 H 0.40 5.46 8.36 -40.82 -0.34 5.12 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.89 4.49 -51.93 -0.23 1.66 16 39 H 0.03 0.70 7.08 -51.93 -0.37 0.33 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.38 3.77 9.08 45.56 0.41 4.19 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -33.24 348.86 -6.33 -39.57 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.51 Total: 6.97 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.63 Total: 2.33 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.03 Total: -52.04 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.34 Total: -20.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.24 -6.33 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090144438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.832 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds