Wall clock time and date at job start Fri Apr 10 2020 17:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35127 * 125.61564 * 2 1 4 4 C 1.40359 * 107.11724 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.64983 * 180.02562 * 4 3 2 6 6 C 1.36549 * 106.70708 * 0.02562 * 4 3 2 7 7 C 1.46657 * 125.98790 * 179.97438 * 6 4 3 8 8 O 1.21700 * 120.00082 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00036 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00427 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.44079 * 324.96534 * 10 9 7 12 12 C 1.53038 * 109.48907 * 84.91263 * 10 9 7 13 13 C 1.53185 * 109.34191 * 181.35799 * 12 10 9 14 14 N 1.46924 * 108.77598 * 305.38167 * 13 12 10 15 15 C 1.36938 * 120.63250 * 233.62791 * 14 13 12 16 16 H 1.08002 * 119.99599 * 152.60482 * 15 14 13 17 17 C 1.38809 * 119.99943 * 332.60984 * 15 14 13 18 18 N 1.31617 * 119.99772 * 159.36893 * 17 15 14 19 19 Si 1.86795 * 120.00139 * 339.36902 * 17 15 14 20 20 H 1.48496 * 109.47516 * 92.92968 * 19 17 15 21 21 H 1.48500 * 109.47259 * 212.93052 * 19 17 15 22 22 H 1.48507 * 109.47215 * 332.92869 * 19 17 15 23 23 C 1.46926 * 118.73861 * 53.60795 * 14 13 12 24 24 C 1.53040 * 109.46264 * 205.00306 * 10 9 7 25 25 H 1.08996 * 109.49425 * 298.59542 * 24 10 9 26 26 O 1.42896 * 109.49676 * 58.66036 * 24 10 9 27 27 O 1.33932 * 125.61429 * 180.29255 * 2 1 3 28 28 H 1.09005 * 109.46891 * 90.00234 * 1 2 3 29 29 H 1.08999 * 109.47046 * 209.99752 * 1 2 3 30 30 H 1.08990 * 109.47366 * 330.00219 * 1 2 3 31 31 H 1.08000 * 126.44193 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47289 * 269.96066 * 5 4 3 33 33 H 1.09004 * 109.47286 * 29.95522 * 5 4 3 34 34 H 1.09004 * 109.47837 * 149.95356 * 5 4 3 35 35 H 0.97008 * 120.00175 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.46906 * 61.40353 * 12 10 9 37 37 H 1.09001 * 109.51919 * 301.34151 * 12 10 9 38 38 H 1.09003 * 109.59080 * 185.59388 * 13 12 10 39 39 H 1.09006 * 109.58638 * 65.16993 * 13 12 10 40 40 H 0.97008 * 119.99985 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.59128 * 186.60633 * 23 14 13 42 42 H 1.08999 * 109.70633 * 66.25143 * 23 14 13 43 43 H 0.96704 * 113.99760 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5823 -0.7116 -0.0015 7 6 4.7415 -1.6101 -0.0029 8 8 5.8681 -1.1499 -0.0038 9 7 4.5590 -2.9454 -0.0032 10 6 5.7169 -3.8430 -0.0040 11 1 6.5190 -3.3999 -0.5944 12 6 6.1995 -4.0551 1.4327 13 6 7.4306 -4.9667 1.4250 14 7 7.0963 -6.2068 0.7115 15 6 7.2994 -7.4266 1.2997 16 1 6.6892 -8.2713 1.0157 17 6 8.2893 -7.5774 2.2610 18 7 8.2376 -8.5848 3.1064 19 14 9.6948 -6.3506 2.3547 20 1 9.3521 -5.2781 3.3228 21 1 10.9290 -7.0450 2.8017 22 1 9.9209 -5.7534 1.0139 23 6 6.5395 -6.1132 -0.6450 24 6 5.3184 -5.1888 -0.6141 25 1 4.5330 -5.6435 -0.0105 26 8 4.8399 -4.9860 -1.9452 27 8 2.2869 -1.0888 -0.0056 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 1.9612 2.1260 0.0004 32 1 5.1600 1.7221 -1.0279 33 1 4.6511 2.4523 0.5136 34 1 5.6684 0.9917 0.5137 35 1 3.6610 -3.3123 -0.0021 36 1 5.4060 -4.5202 2.0175 37 1 6.4614 -3.0937 1.8746 38 1 7.7182 -5.2010 2.4499 39 1 8.2543 -4.4640 0.9179 40 1 8.9296 -8.6904 3.7780 41 1 6.2391 -7.1040 -0.9859 42 1 7.2895 -5.7055 -1.3228 43 1 4.5692 -5.7987 -2.3939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090144438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:07 Heat of formation + Delta-G solvation = -76.282947 kcal Electronic energy + Delta-G solvation = -25982.180393 eV Core-core repulsion = 22221.608452 eV Total energy + Delta-G solvation = -3760.571940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.75859 -41.10021 -39.53352 -37.16215 -36.06841 -35.03265 -34.06764 -33.37550 -32.00514 -30.79327 -28.91781 -28.40819 -26.64784 -24.34239 -23.98519 -22.62534 -22.24694 -21.57181 -20.59401 -19.30732 -18.79807 -18.11372 -17.75220 -17.56490 -16.88210 -16.36701 -16.22091 -15.89135 -15.52324 -15.32278 -14.96498 -14.76209 -14.50047 -14.13963 -14.08187 -14.05677 -13.86635 -13.74879 -13.64609 -13.60831 -13.26399 -13.21212 -12.98413 -12.70476 -12.58366 -12.18310 -11.92343 -11.67276 -11.52937 -11.21613 -11.20657 -10.70802 -10.66487 -10.26972 -9.42992 -9.04059 -8.20596 -5.54310 -0.02960 1.28412 1.31335 1.39975 1.47867 1.57168 2.04938 2.10028 2.37959 2.88654 3.08943 3.31480 3.56642 3.72537 3.76959 3.84862 3.94934 4.04857 4.19755 4.27636 4.44307 4.47184 4.49997 4.57025 4.64112 4.70429 4.72619 4.73933 4.76650 4.81863 4.85723 4.97166 4.99447 5.13874 5.18255 5.24478 5.30635 5.50898 5.79890 5.85825 6.08563 6.40553 6.76523 6.88662 6.98413 7.54213 7.94099 8.98453 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.003478 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.374452 B = 8048.341681 C = 8540.996487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.027 3.973 3 C -0.232 4.232 4 C -0.089 4.089 5 C -0.094 4.094 6 C -0.120 4.120 7 C 0.599 3.401 8 O -0.554 6.554 9 N -0.696 5.696 10 C 0.168 3.832 11 H 0.074 0.926 12 C -0.129 4.129 13 C 0.123 3.877 14 N -0.613 5.613 15 C -0.250 4.250 16 H 0.064 0.936 17 C -0.026 4.026 18 N -0.950 5.950 19 Si 0.935 3.065 20 H -0.276 1.276 21 H -0.308 1.308 22 H -0.265 1.265 23 C 0.121 3.879 24 C 0.099 3.901 25 H 0.069 0.931 26 O -0.569 6.569 27 O -0.172 6.172 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.185 0.815 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 19.620 -8.374 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 C -0.250 4.250 4 C -0.092 4.092 5 C -0.150 4.150 6 C -0.171 4.171 7 C 0.388 3.612 8 O -0.435 6.435 9 N -0.345 5.345 10 C 0.063 3.937 11 H 0.092 0.908 12 C -0.169 4.169 13 C -0.002 4.002 14 N -0.339 5.339 15 C -0.379 4.379 16 H 0.082 0.918 17 C -0.222 4.222 18 N -0.596 5.596 19 Si 0.764 3.236 20 H -0.203 1.203 21 H -0.237 1.237 22 H -0.189 1.189 23 C -0.005 4.005 24 C 0.038 3.962 25 H 0.087 0.913 26 O -0.377 6.377 27 O -0.069 6.069 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.202 0.798 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.585 20.128 -8.151 27.325 hybrid contribution 0.761 -0.685 0.291 1.065 sum -15.824 19.443 -7.860 26.271 Atomic orbital electron populations 1.20671 0.81275 1.05988 1.05407 1.23715 0.95962 0.83419 0.99424 1.21807 0.90532 1.01344 1.11328 1.20992 0.97908 0.91928 0.98341 1.20433 0.92949 0.98506 1.03124 1.21593 0.82105 0.94361 1.19059 1.16783 0.86330 0.81864 0.76268 1.90817 1.23437 1.76458 1.52790 1.45767 1.10583 1.04819 1.73357 1.20771 0.88270 0.88785 0.95887 0.90825 1.22256 0.98984 0.99666 0.96041 1.21357 0.95534 0.86765 0.96554 1.44405 1.74920 1.01387 1.13185 1.18879 1.12695 0.88279 1.18064 0.91782 1.25802 1.00166 0.98413 0.97825 1.69935 1.35717 1.34564 1.19390 0.86095 0.80089 0.78812 0.78558 1.20330 1.23682 1.18928 1.21732 0.94043 0.99162 0.85573 1.22300 0.96233 0.93665 0.83968 0.91303 1.86462 1.85790 1.38169 1.27240 1.83989 1.15483 1.35927 1.71513 0.87925 0.89555 0.86520 0.79803 0.90441 0.88995 0.91774 0.75176 0.90980 0.91057 0.92279 0.95070 0.92805 0.90239 0.94593 0.75193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.41 71.24 0.74 0.19 16 2 C 0.03 0.46 7.31 24.97 0.18 0.65 16 3 C -0.23 -4.06 10.73 22.07 0.24 -3.82 16 4 C -0.09 -2.14 6.20 -19.74 -0.12 -2.27 16 5 C -0.09 -2.06 9.81 71.23 0.70 -1.36 16 6 C -0.12 -3.35 7.13 24.07 0.17 -3.18 16 7 C 0.60 19.46 7.75 86.44 0.67 20.13 16 8 O -0.55 -20.97 14.40 -4.35 -0.06 -21.03 16 9 N -0.70 -20.83 4.91 -446.39 -2.19 -23.02 16 10 C 0.17 5.62 2.12 45.02 0.10 5.72 16 11 H 0.07 2.79 7.58 -2.38 -0.02 2.77 16 12 C -0.13 -4.73 5.65 30.67 0.17 -4.56 16 13 C 0.12 5.39 4.20 86.36 0.36 5.75 16 14 N -0.61 -28.21 2.77 -699.10 -1.94 -30.14 16 15 C -0.25 -13.73 10.03 84.03 0.84 -12.89 16 16 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 17 C -0.03 -1.53 5.23 84.86 0.44 -1.08 16 18 N -0.95 -58.78 13.97 21.65 0.30 -58.47 16 19 Si 0.94 46.74 24.34 68.60 1.67 48.41 16 20 H -0.28 -13.22 6.62 99.48 0.66 -12.57 16 21 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 22 H -0.26 -12.88 6.64 99.48 0.66 -12.22 16 23 C 0.12 4.44 6.14 86.36 0.53 4.97 16 24 C 0.10 3.06 3.14 30.67 0.10 3.15 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 O -0.57 -14.87 13.16 -148.98 -1.96 -16.83 16 27 O -0.17 -4.09 10.40 -5.07 -0.05 -4.14 16 28 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 34 H 0.06 1.74 6.45 -2.39 -0.02 1.73 16 35 H 0.41 10.65 8.36 -92.70 -0.77 9.88 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 38 H 0.06 2.81 4.49 -2.39 -0.01 2.80 16 39 H 0.03 1.37 7.08 -2.38 -0.02 1.35 16 40 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 41 H 0.08 2.75 7.93 -2.39 -0.02 2.74 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.40 6.79 9.08 -74.05 -0.67 6.12 16 Total: -1.00 -73.31 348.86 0.40 -72.92 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.49 Total: 20.92 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.12 Total: 11.39 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.83 Total: -111.64 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -2.08 Total: -42.00 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.67 Total: 48.41 kcal Total: -73.31 0.40 -72.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090144438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.365 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds