Wall clock time and date at job start Fri Apr 10 2020 17:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35129 * 125.61743 * 2 1 4 4 C 1.40366 * 107.11509 * 179.78395 * 3 2 1 5 5 C 1.50702 * 126.64515 * 180.22560 * 4 3 2 6 6 C 1.36543 * 106.70853 * 0.35526 * 4 3 2 7 7 C 1.46656 * 125.98685 * 179.90603 * 6 4 3 8 8 O 1.21692 * 120.00269 * 359.72049 * 7 6 4 9 9 N 1.34786 * 119.99869 * 179.71687 * 7 6 4 10 10 C 1.46495 * 119.99729 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.45398 * 34.96552 * 10 9 7 12 12 C 1.53049 * 109.45944 * 274.99687 * 10 9 7 13 13 C 1.53186 * 109.31092 * 178.61533 * 12 10 9 14 14 N 1.46923 * 108.77642 * 54.64017 * 13 12 10 15 15 C 1.36932 * 120.63533 * 126.38847 * 14 13 12 16 16 H 1.08000 * 120.00358 * 207.68312 * 15 14 13 17 17 C 1.38819 * 120.00090 * 27.67789 * 15 14 13 18 18 N 1.31621 * 119.99419 * 17.36275 * 17 15 14 19 19 Si 1.86794 * 120.00418 * 197.36300 * 17 15 14 20 20 H 1.48502 * 109.47256 * 89.99785 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00369 * 19 17 15 22 22 H 1.48506 * 109.47050 * 330.00047 * 19 17 15 23 23 C 1.46931 * 118.73725 * 306.38834 * 14 13 12 24 24 C 1.53038 * 109.46034 * 154.93462 * 10 9 7 25 25 H 1.08998 * 109.49954 * 61.43037 * 24 10 9 26 26 O 1.42905 * 109.49483 * 301.33438 * 24 10 9 27 27 O 1.33930 * 125.61555 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46732 * 300.01307 * 1 2 3 30 30 H 1.08996 * 109.47446 * 60.01593 * 1 2 3 31 31 H 1.07993 * 126.44099 * 359.97438 * 3 2 1 32 32 H 1.08991 * 109.47424 * 270.15374 * 5 4 3 33 33 H 1.09000 * 109.46806 * 30.15988 * 5 4 3 34 34 H 1.09007 * 109.46830 * 150.15423 * 5 4 3 35 35 H 0.96995 * 119.99530 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.49591 * 58.66728 * 12 10 9 37 37 H 1.09000 * 109.52342 * 298.58499 * 12 10 9 38 38 H 1.08998 * 109.58321 * 174.42225 * 13 12 10 39 39 H 1.08997 * 109.58942 * 294.84866 * 13 12 10 40 40 H 0.97006 * 119.99875 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.58779 * 293.82131 * 23 14 13 42 42 H 1.09004 * 109.70172 * 173.46886 * 23 14 13 43 43 H 0.96697 * 113.99736 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6531 0.0051 5 6 4.8617 1.5143 0.0117 6 6 3.5823 -0.7117 -0.0002 7 6 4.7415 -1.6102 0.0004 8 8 5.8680 -1.1500 0.0008 9 7 4.5590 -2.9456 0.0006 10 6 5.7168 -3.8430 0.0017 11 1 6.5192 -3.3996 0.5912 12 6 6.1980 -4.0564 -1.4354 13 6 7.4296 -4.9673 -1.4274 14 7 7.0963 -6.2068 -0.7125 15 6 7.3000 -7.4272 -1.2993 16 1 6.6874 -8.2709 -1.0176 17 6 8.2938 -7.5799 -2.2564 18 7 9.2506 -6.6820 -2.3605 19 14 8.2734 -9.0595 -3.3963 20 1 7.4935 -8.7331 -4.6172 21 1 9.6652 -9.4104 -3.7770 22 1 7.6451 -10.2115 -2.7009 23 6 6.5402 -6.1121 0.6443 24 6 5.3186 -5.1883 0.6130 25 1 4.5333 -5.6439 0.0098 26 8 4.8406 -4.9844 1.9442 27 8 2.2869 -1.0888 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3634 0.5136 -0.8901 31 1 1.9613 2.1259 -0.0004 32 1 5.1628 1.7258 -1.0142 33 1 4.6498 2.4503 0.5286 34 1 5.6671 0.9896 0.5259 35 1 3.6610 -3.3123 -0.0001 36 1 6.4594 -3.0952 -1.8780 37 1 5.4046 -4.5223 -2.0198 38 1 7.7167 -5.2026 -2.4522 39 1 8.2532 -4.4638 -0.9214 40 1 9.9453 -6.7888 -3.0290 41 1 7.2913 -5.7020 1.3193 42 1 6.2410 -7.1021 0.9887 43 1 4.5702 -5.7968 2.3937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090144439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:10 Heat of formation + Delta-G solvation = -80.161130 kcal Electronic energy + Delta-G solvation = -25881.097881 eV Core-core repulsion = 22120.357770 eV Total energy + Delta-G solvation = -3760.740111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.75263 -41.03109 -39.41065 -37.01270 -36.03818 -35.02013 -33.87864 -33.30966 -31.81054 -30.30489 -28.91424 -28.34197 -26.74870 -24.23558 -23.74171 -22.59988 -22.19748 -21.40004 -20.56672 -19.30077 -18.72026 -18.06406 -17.58956 -17.40646 -16.80813 -16.38420 -15.79069 -15.74024 -15.62871 -15.14111 -15.02117 -14.67596 -14.39482 -14.12210 -14.05569 -13.90672 -13.71387 -13.63312 -13.58922 -13.31091 -13.23658 -12.99371 -12.74291 -12.59513 -12.40792 -12.14499 -12.06953 -11.90672 -11.48693 -11.20066 -11.04645 -10.66253 -10.58958 -10.20623 -9.41686 -8.78961 -7.91300 -5.38850 -0.01960 1.31978 1.48270 1.49863 1.58144 1.58764 2.06337 2.13079 2.48540 3.08065 3.25754 3.58459 3.59791 3.77092 3.79523 3.87479 4.00959 4.17768 4.34973 4.45400 4.48483 4.49032 4.56194 4.62348 4.72044 4.73595 4.75591 4.80817 4.88010 4.96877 4.98544 5.09202 5.15462 5.24763 5.32245 5.36620 5.51961 5.58468 5.64277 5.86806 6.32502 6.43020 6.85215 7.01197 7.08160 7.76259 8.29149 9.16183 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.003186 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.425435 B = 8787.279504 C = 9039.244896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.028 3.972 3 C -0.231 4.231 4 C -0.089 4.089 5 C -0.094 4.094 6 C -0.119 4.119 7 C 0.597 3.403 8 O -0.556 6.556 9 N -0.696 5.696 10 C 0.170 3.830 11 H 0.062 0.938 12 C -0.130 4.130 13 C 0.181 3.819 14 N -0.604 5.604 15 C -0.267 4.267 16 H 0.077 0.923 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.264 1.264 23 C 0.119 3.881 24 C 0.102 3.898 25 H 0.073 0.927 26 O -0.572 6.572 27 O -0.171 6.171 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.185 0.815 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.412 0.588 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.064 0.936 39 H -0.006 1.006 40 H 0.251 0.749 41 H 0.014 0.986 42 H 0.078 0.922 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.455 13.234 5.522 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 C -0.250 4.250 4 C -0.092 4.092 5 C -0.150 4.150 6 C -0.171 4.171 7 C 0.385 3.615 8 O -0.438 6.438 9 N -0.345 5.345 10 C 0.065 3.935 11 H 0.080 0.920 12 C -0.170 4.170 13 C 0.055 3.945 14 N -0.328 5.328 15 C -0.396 4.396 16 H 0.095 0.905 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.800 3.200 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.188 1.188 23 C -0.008 4.008 24 C 0.041 3.959 25 H 0.090 0.910 26 O -0.379 6.379 27 O -0.068 6.068 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.203 0.797 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.013 0.987 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.096 0.904 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.487 13.806 5.314 24.466 hybrid contribution 0.463 -1.355 -0.542 1.531 sum -19.024 12.451 4.771 23.232 Atomic orbital electron populations 1.20677 0.81149 1.05514 1.05948 1.23736 0.95998 0.83380 0.99369 1.21780 0.90411 1.01406 1.11390 1.21001 0.97962 0.91903 0.98379 1.20430 0.92957 0.98536 1.03098 1.21562 0.82067 0.94343 1.19094 1.16834 0.86364 0.81946 0.76331 1.90823 1.23617 1.76491 1.52826 1.45787 1.10548 1.04832 1.73299 1.20753 0.87801 0.88735 0.96172 0.91993 1.22349 0.99764 0.99585 0.95317 1.20543 0.91575 0.84842 0.97576 1.44256 1.74156 1.02393 1.12009 1.19579 1.11916 0.89082 1.19061 0.90493 1.25890 0.94693 1.00874 1.03147 1.70208 1.13214 1.38586 1.36138 0.85201 0.76307 0.79434 0.79083 1.21135 1.22460 1.18843 1.21675 0.93661 0.98566 0.86860 1.22319 0.96251 0.93645 0.83705 0.90955 1.86464 1.85844 1.38121 1.27470 1.83993 1.15421 1.35957 1.71473 0.89730 0.87011 0.87083 0.79736 0.90532 0.88828 0.91957 0.75213 0.92291 0.91321 0.91729 0.98750 0.93986 0.96799 0.90401 0.75308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.41 71.24 0.74 0.16 16 2 C 0.03 0.50 7.31 24.97 0.18 0.68 16 3 C -0.23 -4.31 10.73 22.07 0.24 -4.07 16 4 C -0.09 -2.31 6.20 -19.74 -0.12 -2.43 16 5 C -0.09 -2.24 9.81 71.24 0.70 -1.54 16 6 C -0.12 -3.56 7.13 24.07 0.17 -3.39 16 7 C 0.60 21.10 7.75 86.44 0.67 21.77 16 8 O -0.56 -23.11 14.40 -4.32 -0.06 -23.17 16 9 N -0.70 -22.79 4.91 -446.39 -2.19 -24.99 16 10 C 0.17 6.38 2.12 45.02 0.10 6.48 16 11 H 0.06 2.71 7.57 -2.39 -0.02 2.69 16 12 C -0.13 -5.34 5.65 30.67 0.17 -5.17 16 13 C 0.18 9.10 5.31 86.36 0.46 9.56 16 14 N -0.60 -30.06 2.99 -699.11 -2.09 -32.16 16 15 C -0.27 -14.27 9.59 84.04 0.81 -13.47 16 16 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 17 C -0.05 -2.78 4.91 84.86 0.42 -2.37 16 18 N -0.94 -55.70 11.19 21.65 0.24 -55.45 16 19 Si 0.97 44.12 29.59 68.60 2.03 46.15 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 C 0.12 4.82 6.14 86.36 0.53 5.35 16 24 C 0.10 3.42 3.14 30.67 0.10 3.52 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 O -0.57 -16.42 13.16 -148.98 -1.96 -18.38 16 27 O -0.17 -4.29 10.40 -5.07 -0.05 -4.34 16 28 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.83 6.45 -2.38 -0.02 1.82 16 35 H 0.41 11.50 8.36 -92.71 -0.77 10.72 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.06 3.62 6.04 -2.39 -0.01 3.60 16 39 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 2.85 7.94 -2.39 -0.02 2.83 16 43 H 0.40 7.53 9.08 -74.06 -0.67 6.86 16 Total: -1.00 -72.93 355.28 0.66 -72.27 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.41 Total: 25.01 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.16 Total: 15.07 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -4.04 Total: -112.60 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -2.08 Total: -45.90 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.93 0.66 -72.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090144439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds