Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40364 * 126.44381 * 2 1 4 4 C 1.36546 * 106.70896 * 179.97438 * 3 2 1 5 5 C 1.46659 * 125.98761 * 180.02562 * 4 3 2 6 6 O 1.21697 * 119.99807 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99805 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99719 * 179.97438 * 7 5 4 9 9 H 1.09008 * 109.46015 * 35.00406 * 8 7 5 10 10 C 1.53041 * 109.46409 * 275.03307 * 8 7 5 11 11 C 1.53190 * 109.31175 * 178.61676 * 10 8 7 12 12 N 1.46923 * 108.77806 * 54.63093 * 11 10 8 13 13 C 1.36939 * 120.63108 * 126.36544 * 12 11 10 14 14 H 1.08001 * 120.00245 * 331.84019 * 13 12 11 15 15 C 1.38815 * 119.99959 * 151.82936 * 13 12 11 16 16 N 1.31613 * 119.99895 * 343.09183 * 15 13 12 17 17 Si 1.86804 * 119.99779 * 163.08730 * 15 13 12 18 18 H 1.48507 * 109.46928 * 90.00438 * 17 15 13 19 19 H 1.48493 * 109.46911 * 210.00266 * 17 15 13 20 20 H 1.48500 * 109.47063 * 330.00225 * 17 15 13 21 21 C 1.46925 * 118.73894 * 306.39232 * 12 11 10 22 22 C 1.53040 * 109.45892 * 154.97298 * 8 7 5 23 23 H 1.09000 * 109.49595 * 301.34198 * 22 8 7 24 24 O 1.42901 * 109.49394 * 61.43805 * 22 8 7 25 25 O 1.34914 * 108.02273 * 0.02562 * 4 3 2 26 26 C 1.33929 * 109.38559 * 359.97438 * 25 4 3 27 27 C 1.50697 * 125.61523 * 179.97438 * 26 25 4 28 28 H 1.08994 * 109.47449 * 89.96936 * 1 2 3 29 29 H 1.09005 * 109.47276 * 209.97633 * 1 2 3 30 30 H 1.09001 * 109.47050 * 329.96854 * 1 2 3 31 31 H 1.07999 * 126.64903 * 0.02562 * 3 2 1 32 32 H 0.96993 * 119.99877 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.48974 * 298.56363 * 10 8 7 34 34 H 1.09001 * 109.49802 * 58.62541 * 10 8 7 35 35 H 1.09001 * 109.58571 * 174.42248 * 11 10 8 36 36 H 1.08995 * 109.58523 * 294.84327 * 11 10 8 37 37 H 0.97002 * 119.99774 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58546 * 173.39746 * 21 12 11 39 39 H 1.08994 * 109.58734 * 293.81859 * 21 12 11 40 40 H 0.96706 * 113.99669 * 180.02562 * 24 22 8 41 41 H 1.09000 * 109.47045 * 0.02723 * 27 26 25 42 42 H 1.08999 * 109.47067 * 120.02849 * 27 26 25 43 43 H 1.09002 * 109.47535 * 240.03005 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1291 0.0000 4 6 3.6260 0.6681 0.0006 5 6 4.8379 1.4941 0.0013 6 8 4.7471 2.7076 0.0010 7 7 6.0521 0.9091 0.0024 8 6 7.2626 1.7342 0.0026 9 1 7.0882 2.6347 0.5915 10 6 7.6135 2.1251 -1.4349 11 6 8.8597 3.0161 -1.4277 12 7 9.9363 2.3178 -0.7123 13 6 11.1598 2.1347 -1.2994 14 1 11.2385 2.0684 -2.3745 15 6 12.2992 2.0347 -0.5127 16 7 12.2717 2.4386 0.7396 17 14 13.8712 1.3264 -1.2315 18 1 14.6800 2.4204 -1.8269 19 1 14.6516 0.6624 -0.1568 20 1 13.5316 0.3336 -2.2823 21 6 9.6751 1.8190 0.6448 22 6 8.4200 0.9413 0.6142 23 1 8.1599 0.6430 1.6298 24 8 8.6708 -0.2226 -0.1761 25 8 3.5857 -0.6805 0.0004 26 6 2.3096 -1.0871 0.0002 27 6 1.8454 -2.5208 -0.0006 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 2.0267 2.1625 0.0004 32 1 6.1244 -0.0582 0.0023 33 1 7.8125 1.2259 -2.0180 34 1 6.7793 2.6689 -1.8780 35 1 9.1718 3.2160 -2.4528 36 1 8.6344 3.9552 -0.9224 37 1 13.0678 2.3683 1.2894 38 1 10.5253 1.2291 0.9872 39 1 9.5164 2.6605 1.3191 40 1 9.3934 -0.7740 0.1542 41 1 2.7112 -3.1830 -0.0006 42 1 1.2443 -2.7085 0.8890 43 1 1.2450 -2.7078 -0.8909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090197707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = -55.685482 kcal Electronic energy + Delta-G solvation = -25776.614384 eV Core-core repulsion = 22016.935617 eV Total energy + Delta-G solvation = -3759.678767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.86509 -39.64823 -37.89000 -34.83970 -34.76494 -34.22868 -32.33335 -31.95757 -29.60571 -29.10739 -28.87131 -26.65398 -24.94598 -22.85286 -22.20234 -21.51672 -21.11336 -19.75609 -19.26651 -17.88125 -17.16066 -16.65718 -16.10581 -15.69978 -15.47052 -14.98906 -14.58208 -14.26831 -13.93288 -13.86130 -13.72128 -13.49978 -13.28611 -13.23444 -13.11696 -12.93733 -12.76360 -12.56218 -12.15058 -12.00778 -11.77948 -11.28557 -11.17753 -10.79420 -10.61627 -10.49038 -10.31181 -10.07318 -10.01172 -9.85542 -9.67788 -9.20227 -8.83322 -8.53891 -8.45416 -6.68603 -5.82421 -3.23219 0.98089 2.11631 2.51682 3.24254 3.31675 3.36336 3.43070 3.46116 4.41854 4.47397 4.57682 4.67229 4.83370 4.93021 5.06810 5.17542 5.28898 5.31491 5.36184 5.38739 5.45215 5.52990 5.55708 5.59278 5.74072 5.84435 5.93619 6.02424 6.19137 6.23559 6.27794 6.44258 6.53429 6.71554 6.78904 6.83318 6.98143 7.16003 7.41688 7.66578 7.77673 8.20409 8.26401 8.42329 9.17136 9.80200 10.37252 11.26543 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.032459 B = 0.002946 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.415548 B = 9503.356748 C = 9929.302485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.195 4.195 3 C -0.121 4.121 4 C -0.070 4.070 5 C 0.597 3.403 6 O -0.525 6.525 7 N -0.705 5.705 8 C 0.161 3.839 9 H 0.094 0.906 10 C -0.137 4.137 11 C 0.149 3.851 12 N -0.583 5.583 13 C -0.243 4.243 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.907 5.907 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.146 3.854 22 C 0.073 3.927 23 H 0.044 0.956 24 O -0.559 6.559 25 O -0.160 6.160 26 C 0.011 3.989 27 C -0.076 4.076 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.254 0.746 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.375 0.625 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 -9.470 0.888 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.196 4.196 3 C -0.141 4.141 4 C -0.122 4.122 5 C 0.382 3.618 6 O -0.403 6.403 7 N -0.354 5.354 8 C 0.058 3.942 9 H 0.111 0.889 10 C -0.178 4.178 11 C 0.022 3.978 12 N -0.305 5.305 13 C -0.372 4.372 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.552 5.552 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.019 3.981 22 C 0.012 3.988 23 H 0.062 0.938 24 O -0.365 6.365 25 O -0.056 6.056 26 C -0.041 4.041 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.242 0.758 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.222 0.778 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.998 -8.527 0.648 22.672 hybrid contribution 1.269 -0.868 0.092 1.540 sum -19.728 -9.395 0.739 21.864 Atomic orbital electron populations 1.20161 0.88694 1.02677 1.02164 1.20188 0.97436 0.91829 1.10153 1.21800 0.90556 1.00416 1.01354 1.22182 0.96431 0.80128 1.13449 1.16616 0.81401 0.86410 0.77356 1.90877 1.85948 1.12140 1.51337 1.46159 1.05176 1.11236 1.72857 1.21119 0.81211 0.93294 0.98605 0.88854 1.22327 0.98913 1.01246 0.95274 1.20893 0.87581 0.92613 0.96753 1.43877 1.09407 1.63231 1.13995 1.19170 0.83172 1.43336 0.91571 0.91693 1.25028 0.97478 1.00737 0.96637 1.70014 1.28607 1.49000 1.07618 0.86295 0.83336 0.79065 0.78087 1.21425 1.21645 1.20480 1.21439 0.93763 0.95614 0.87303 1.22843 0.96758 0.87477 0.91757 0.93792 1.86354 1.57153 1.36895 1.56079 1.84028 1.28736 1.21970 1.70840 1.22563 0.80731 0.97141 1.03688 1.20374 1.01975 0.87170 1.03709 0.91370 0.91594 0.91340 0.82350 0.75843 0.91092 0.92769 0.92343 0.96138 0.93638 0.88580 0.95350 0.77766 0.90194 0.89389 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.17 36.00 0.37 -0.19 16 2 C -0.19 -2.04 6.14 -104.93 -0.64 -2.69 16 3 C -0.12 -1.54 10.57 -39.39 -0.42 -1.96 16 4 C -0.07 -1.01 7.13 -36.80 -0.26 -1.27 16 5 C 0.60 9.97 7.75 -12.86 -0.10 9.87 16 6 O -0.52 -10.18 16.53 5.19 0.09 -10.09 16 7 N -0.71 -11.40 5.05 -55.07 -0.28 -11.68 16 8 C 0.16 2.94 2.20 -67.89 -0.15 2.79 16 9 H 0.09 1.81 7.58 -51.92 -0.39 1.42 16 10 C -0.14 -2.66 5.51 -26.61 -0.15 -2.81 16 11 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 12 N -0.58 -14.40 2.93 -172.33 -0.51 -14.91 16 13 C -0.24 -6.57 9.58 -15.06 -0.14 -6.71 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 15 C 0.00 -0.03 4.92 -17.43 -0.09 -0.11 16 16 N -0.91 -25.66 11.20 55.49 0.62 -25.04 16 17 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.15 3.32 4.95 -3.71 -0.02 3.31 16 22 C 0.07 1.34 3.38 -26.61 -0.09 1.25 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 O -0.56 -10.04 12.08 -35.23 -0.43 -10.47 16 25 O -0.16 -2.08 10.40 5.00 0.05 -2.03 16 26 C 0.01 0.12 7.31 -35.42 -0.26 -0.14 16 27 C -0.08 -0.46 9.92 36.00 0.36 -0.10 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.35 7.88 -51.93 -0.41 -0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.41 6.06 8.01 -40.82 -0.33 5.74 16 33 H 0.07 1.45 7.61 -51.93 -0.40 1.05 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.10 2.39 6.06 -51.93 -0.31 2.07 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.38 5.81 9.09 45.56 0.41 6.23 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -31.90 356.82 -7.33 -39.23 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.61 Total: 8.84 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.62 Total: 4.44 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.16 Total: -51.63 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.29 Total: -22.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.90 -7.33 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090197707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.456 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds