Wall clock time and date at job start Fri Apr 10 2020 17:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40368 * 126.44218 * 2 1 4 4 C 1.36538 * 106.70732 * 180.02562 * 3 2 1 5 5 C 1.46656 * 125.98884 * 179.97438 * 4 3 2 6 6 O 1.21697 * 120.00032 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00302 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00369 * 179.97438 * 7 5 4 9 9 H 1.09006 * 109.45622 * 324.97397 * 8 7 5 10 10 C 1.53036 * 109.44579 * 84.93652 * 8 7 5 11 11 C 1.52762 * 109.38195 * 181.25353 * 10 8 7 12 12 N 1.46924 * 109.01065 * 305.59134 * 11 10 8 13 13 C 1.36940 * 120.63095 * 233.58150 * 12 11 10 14 14 H 1.08002 * 119.99755 * 29.32281 * 13 12 11 15 15 C 1.38808 * 119.99865 * 209.32094 * 13 12 11 16 16 N 1.31618 * 119.99792 * 198.90084 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 18.90347 * 15 13 12 18 18 H 1.48499 * 109.46914 * 273.06219 * 17 15 13 19 19 H 1.48499 * 109.47046 * 33.06334 * 17 15 13 20 20 H 1.48497 * 109.47321 * 153.06157 * 17 15 13 21 21 C 1.46926 * 118.73614 * 53.30809 * 12 11 10 22 22 C 1.53041 * 109.46067 * 204.99935 * 8 7 5 23 23 H 1.08996 * 109.49427 * 58.67749 * 22 8 7 24 24 O 1.42893 * 109.52297 * 298.59533 * 22 8 7 25 25 O 1.34919 * 108.02707 * 0.24155 * 4 3 2 26 26 C 1.33935 * 109.37715 * 359.60066 * 25 4 3 27 27 C 1.50708 * 125.61151 * 180.12207 * 26 25 4 28 28 H 1.09001 * 109.47493 * 90.02020 * 1 2 3 29 29 H 1.08992 * 109.47291 * 210.01852 * 1 2 3 30 30 H 1.09004 * 109.46917 * 330.02363 * 1 2 3 31 31 H 1.08001 * 126.64752 * 0.02998 * 3 2 1 32 32 H 0.97003 * 119.99734 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.50319 * 301.33229 * 10 8 7 34 34 H 1.09003 * 109.49980 * 61.43290 * 10 8 7 35 35 H 1.09002 * 109.51318 * 185.70346 * 11 10 8 36 36 H 1.09006 * 109.43228 * 65.42625 * 11 10 8 37 37 H 0.97002 * 119.99787 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.59030 * 66.43467 * 21 12 11 39 39 H 1.09008 * 109.58595 * 186.71586 * 21 12 11 40 40 H 0.96708 * 113.99969 * 180.14671 * 24 22 8 41 41 H 1.09002 * 109.47009 * 270.32537 * 27 26 25 42 42 H 1.09002 * 109.46582 * 30.32296 * 27 26 25 43 43 H 1.08991 * 109.47233 * 150.32667 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4941 -0.0013 6 8 4.7471 2.7077 -0.0019 7 7 6.0521 0.9092 -0.0013 8 6 7.2627 1.7343 -0.0027 9 1 7.0884 2.6337 -0.5933 10 6 7.6126 2.1278 1.4343 11 6 8.8571 3.0137 1.4285 12 7 9.9359 2.3189 0.7130 13 6 11.1591 2.1369 1.3012 14 1 11.2341 2.0497 2.3751 15 6 12.3023 2.0645 0.5173 16 7 13.4022 1.5313 1.0054 17 14 12.2798 2.7240 -1.2303 18 1 11.8016 1.6635 -2.1533 19 1 11.3687 3.8941 -1.3061 20 1 13.6513 3.1384 -1.6207 21 6 9.6755 1.8177 -0.6434 22 6 8.4202 0.9402 -0.6123 23 1 8.1607 0.6402 -1.6275 24 8 8.6707 -0.2228 0.1794 25 8 3.5858 -0.6804 -0.0063 26 6 2.3096 -1.0870 -0.0006 27 6 1.8454 -2.5208 -0.0016 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 2.0267 2.1625 0.0005 32 1 6.1244 -0.0581 -0.0005 33 1 6.7784 2.6731 1.8757 34 1 7.8112 1.2298 2.0193 35 1 9.1675 3.2121 2.4544 36 1 8.6308 3.9536 0.9249 37 1 14.2010 1.4804 0.4574 38 1 9.5174 2.6580 -1.3194 39 1 10.5270 1.2291 -0.9852 40 1 9.3952 -0.7732 -0.1484 41 1 1.7336 -2.8657 -1.0296 42 1 2.5802 -3.1409 0.5119 43 1 0.8868 -2.5926 0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090197708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:15 Heat of formation + Delta-G solvation = -49.090533 kcal Electronic energy + Delta-G solvation = -25866.736355 eV Core-core repulsion = 22107.343566 eV Total energy + Delta-G solvation = -3759.392789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.92220 -39.81120 -38.15369 -35.03428 -34.87845 -34.35249 -32.38324 -32.03361 -30.22586 -29.46621 -28.93495 -26.76754 -24.92419 -23.11596 -22.47422 -21.55088 -21.21742 -19.86244 -19.48374 -17.99732 -17.27136 -16.71631 -16.42109 -15.77464 -15.62588 -15.24217 -14.71654 -14.37345 -14.25487 -14.12335 -13.95613 -13.55276 -13.35811 -13.25366 -13.19407 -12.97216 -12.74446 -12.52676 -12.44645 -12.40822 -11.86935 -11.72699 -11.48613 -11.01861 -10.74860 -10.49478 -10.30277 -10.27928 -10.00884 -9.90973 -9.53260 -9.42148 -8.94585 -8.63511 -8.54698 -6.97071 -5.97310 -3.34693 0.91530 2.06420 2.45003 3.14960 3.21056 3.22856 3.44619 3.47313 4.35504 4.47431 4.52420 4.56388 4.65646 4.86153 4.92811 5.03243 5.09460 5.17342 5.26539 5.29638 5.33322 5.34572 5.45675 5.55037 5.61899 5.69247 5.70362 5.80041 5.95905 6.05421 6.21698 6.23010 6.27219 6.38198 6.44877 6.59830 6.66170 6.73801 6.96027 7.55145 7.92072 8.08479 8.14046 8.32038 8.90758 9.68188 10.06149 11.18885 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.003106 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.170030 B = 9013.620368 C = 9307.898144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.195 4.195 3 C -0.119 4.119 4 C -0.071 4.071 5 C 0.599 3.401 6 O -0.524 6.524 7 N -0.706 5.706 8 C 0.160 3.840 9 H 0.095 0.905 10 C -0.140 4.140 11 C 0.151 3.849 12 N -0.596 5.596 13 C -0.252 4.252 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.289 1.289 19 H -0.272 1.272 20 H -0.303 1.303 21 C 0.096 3.904 22 C 0.083 3.917 23 H 0.049 0.951 24 O -0.553 6.553 25 O -0.160 6.160 26 C 0.013 3.987 27 C -0.077 4.077 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.408 0.592 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.379 0.621 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.048 -7.377 -4.331 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.196 4.196 3 C -0.140 4.140 4 C -0.123 4.123 5 C 0.384 3.616 6 O -0.402 6.402 7 N -0.355 5.355 8 C 0.057 3.943 9 H 0.113 0.887 10 C -0.180 4.180 11 C 0.025 3.975 12 N -0.319 5.319 13 C -0.380 4.380 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.552 5.552 17 Si 0.713 3.287 18 H -0.217 1.217 19 H -0.197 1.197 20 H -0.231 1.231 21 C -0.031 4.031 22 C 0.021 3.979 23 H 0.067 0.933 24 O -0.359 6.359 25 O -0.056 6.056 26 C -0.039 4.039 27 C -0.133 4.133 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.243 0.757 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.101 0.899 40 H 0.227 0.773 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.105 -6.463 -3.981 25.272 hybrid contribution 0.563 -0.229 -1.411 1.537 sum -23.542 -6.692 -5.393 25.062 Atomic orbital electron populations 1.20181 0.88666 1.02724 1.02180 1.20196 0.97457 0.91805 1.10136 1.21802 0.90538 1.00431 1.01179 1.22119 0.96341 0.80176 1.13711 1.16596 0.81357 0.86402 0.77221 1.90879 1.85961 1.12140 1.51266 1.46093 1.05045 1.11266 1.73102 1.21077 0.81271 0.93211 0.98749 0.88718 1.22259 0.98874 1.01567 0.95264 1.20841 0.86947 0.92478 0.97233 1.44207 1.10741 1.63644 1.13328 1.18914 0.81422 1.44216 0.93495 0.89684 1.25326 0.95184 0.99435 0.97723 1.69820 1.02516 1.45442 1.37429 0.87014 0.75964 0.79964 0.85743 1.21692 1.19693 1.23055 1.22119 0.95962 0.96158 0.88846 1.22543 0.95559 0.87379 0.92420 0.93321 1.86388 1.57070 1.36523 1.55882 1.84025 1.28756 1.21908 1.70906 1.22571 0.80712 0.97177 1.03480 1.20397 1.01967 0.87133 1.03837 0.91353 0.91540 0.91317 0.82326 0.75676 0.92240 0.90631 0.91360 0.95688 0.92756 0.94914 0.89877 0.77342 0.89662 0.90098 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.16 36.01 0.37 -0.16 16 2 C -0.19 -1.95 6.14 -104.93 -0.64 -2.59 16 3 C -0.12 -1.45 10.57 -39.39 -0.42 -1.87 16 4 C -0.07 -0.98 7.13 -36.80 -0.26 -1.25 16 5 C 0.60 9.45 7.75 -12.86 -0.10 9.35 16 6 O -0.52 -9.64 16.53 5.19 0.09 -9.56 16 7 N -0.71 -10.70 5.05 -55.08 -0.28 -10.98 16 8 C 0.16 2.73 2.20 -67.89 -0.15 2.58 16 9 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 10 C -0.14 -2.54 5.50 -26.83 -0.15 -2.69 16 11 C 0.15 3.09 6.49 -3.93 -0.03 3.06 16 12 N -0.60 -13.96 2.69 -172.58 -0.46 -14.42 16 13 C -0.25 -6.94 10.03 -15.06 -0.15 -7.09 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 15 C 0.02 0.62 5.25 -17.43 -0.09 0.53 16 16 N -0.91 -27.43 13.97 55.49 0.78 -26.65 16 17 Si 0.88 21.86 24.35 -169.99 -4.14 17.72 16 18 H -0.29 -6.71 6.40 56.52 0.36 -6.35 16 19 H -0.27 -6.72 6.93 56.52 0.39 -6.32 16 20 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 21 C 0.10 2.01 3.85 -3.71 -0.01 1.99 16 22 C 0.08 1.42 3.38 -26.61 -0.09 1.33 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 O -0.55 -9.51 12.09 -35.23 -0.43 -9.93 16 25 O -0.16 -1.99 10.40 4.97 0.05 -1.94 16 26 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 27 C -0.08 -0.44 10.21 36.01 0.37 -0.07 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.33 7.13 -51.93 -0.37 -0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.41 5.70 8.01 -40.82 -0.33 5.38 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.48 7.61 -51.93 -0.40 1.08 16 35 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 38 H 0.03 0.68 7.21 -51.93 -0.37 0.31 16 39 H 0.08 1.85 4.51 -51.92 -0.23 1.62 16 40 H 0.38 5.65 9.08 45.56 0.41 6.06 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.35 7.13 -51.93 -0.37 -0.02 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -33.01 349.08 -6.20 -39.22 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.45 Total: 8.30 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.62 Total: 2.99 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.03 Total: -52.05 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.29 Total: -21.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.01 -6.20 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090197708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.874 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds