Wall clock time and date at job start Fri Apr 10 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40368 * 126.44218 * 2 1 4 4 C 1.36538 * 106.70732 * 180.02562 * 3 2 1 5 5 C 1.46656 * 125.98884 * 179.97438 * 4 3 2 6 6 O 1.21697 * 120.00032 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00302 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00369 * 179.97438 * 7 5 4 9 9 H 1.09006 * 109.45622 * 324.97397 * 8 7 5 10 10 C 1.53036 * 109.44579 * 84.93652 * 8 7 5 11 11 C 1.52762 * 109.38195 * 181.25353 * 10 8 7 12 12 N 1.46924 * 109.01065 * 305.59134 * 11 10 8 13 13 C 1.36940 * 120.63095 * 233.58150 * 12 11 10 14 14 H 1.08002 * 119.99755 * 29.32281 * 13 12 11 15 15 C 1.38808 * 119.99865 * 209.32094 * 13 12 11 16 16 N 1.31618 * 119.99792 * 198.90084 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 18.90347 * 15 13 12 18 18 H 1.48499 * 109.46914 * 273.06219 * 17 15 13 19 19 H 1.48499 * 109.47046 * 33.06334 * 17 15 13 20 20 H 1.48497 * 109.47321 * 153.06157 * 17 15 13 21 21 C 1.46926 * 118.73614 * 53.30809 * 12 11 10 22 22 C 1.53041 * 109.46067 * 204.99935 * 8 7 5 23 23 H 1.08996 * 109.49427 * 58.67749 * 22 8 7 24 24 O 1.42893 * 109.52297 * 298.59533 * 22 8 7 25 25 O 1.34919 * 108.02707 * 0.24155 * 4 3 2 26 26 C 1.33935 * 109.37715 * 359.60066 * 25 4 3 27 27 C 1.50708 * 125.61151 * 180.12207 * 26 25 4 28 28 H 1.09001 * 109.47493 * 90.02020 * 1 2 3 29 29 H 1.08992 * 109.47291 * 210.01852 * 1 2 3 30 30 H 1.09004 * 109.46917 * 330.02363 * 1 2 3 31 31 H 1.08001 * 126.64752 * 0.02998 * 3 2 1 32 32 H 0.97003 * 119.99734 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.50319 * 301.33229 * 10 8 7 34 34 H 1.09003 * 109.49980 * 61.43290 * 10 8 7 35 35 H 1.09002 * 109.51318 * 185.70346 * 11 10 8 36 36 H 1.09006 * 109.43228 * 65.42625 * 11 10 8 37 37 H 0.97002 * 119.99787 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.59030 * 66.43467 * 21 12 11 39 39 H 1.09008 * 109.58595 * 186.71586 * 21 12 11 40 40 H 0.96708 * 113.99969 * 180.14671 * 24 22 8 41 41 H 1.09002 * 109.47009 * 270.32537 * 27 26 25 42 42 H 1.09002 * 109.46582 * 30.32296 * 27 26 25 43 43 H 1.08991 * 109.47233 * 150.32667 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4941 -0.0013 6 8 4.7471 2.7077 -0.0019 7 7 6.0521 0.9092 -0.0013 8 6 7.2627 1.7343 -0.0027 9 1 7.0884 2.6337 -0.5933 10 6 7.6126 2.1278 1.4343 11 6 8.8571 3.0137 1.4285 12 7 9.9359 2.3189 0.7130 13 6 11.1591 2.1369 1.3012 14 1 11.2341 2.0497 2.3751 15 6 12.3023 2.0645 0.5173 16 7 13.4022 1.5313 1.0054 17 14 12.2798 2.7240 -1.2303 18 1 11.8016 1.6635 -2.1533 19 1 11.3687 3.8941 -1.3061 20 1 13.6513 3.1384 -1.6207 21 6 9.6755 1.8177 -0.6434 22 6 8.4202 0.9402 -0.6123 23 1 8.1607 0.6402 -1.6275 24 8 8.6707 -0.2228 0.1794 25 8 3.5858 -0.6804 -0.0063 26 6 2.3096 -1.0870 -0.0006 27 6 1.8454 -2.5208 -0.0016 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 2.0267 2.1625 0.0005 32 1 6.1244 -0.0581 -0.0005 33 1 6.7784 2.6731 1.8757 34 1 7.8112 1.2298 2.0193 35 1 9.1675 3.2121 2.4544 36 1 8.6308 3.9536 0.9249 37 1 14.2010 1.4804 0.4574 38 1 9.5174 2.6580 -1.3194 39 1 10.5270 1.2291 -0.9852 40 1 9.3952 -0.7732 -0.1484 41 1 1.7336 -2.8657 -1.0296 42 1 2.5802 -3.1409 0.5119 43 1 0.8868 -2.5926 0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090197708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:14 Heat of formation + Delta-G solvation = -74.655085 kcal Electronic energy + Delta-G solvation = -25867.844917 eV Core-core repulsion = 22107.343566 eV Total energy + Delta-G solvation = -3760.501351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.78303 -41.13612 -39.60052 -36.66555 -35.99052 -35.36908 -34.08096 -33.05328 -31.88132 -30.96639 -29.58149 -27.83730 -26.45356 -24.69027 -23.76115 -22.92677 -22.20848 -21.26689 -20.61403 -19.35461 -18.78514 -17.88687 -17.60563 -17.29556 -16.92065 -16.59605 -16.06690 -15.90901 -15.72389 -15.45487 -14.96374 -14.60811 -14.53652 -14.33974 -14.15855 -14.01926 -13.99531 -13.66689 -13.63400 -13.43127 -13.06760 -12.95553 -12.71138 -12.49190 -12.45623 -12.22174 -12.01505 -11.91453 -11.54797 -11.36779 -10.96784 -10.76333 -10.63420 -10.24183 -9.38526 -8.91757 -8.15415 -5.50188 -0.04949 1.25611 1.26676 1.43328 1.51311 1.54271 2.02367 2.08776 2.40600 3.00322 3.26961 3.32297 3.56140 3.68511 3.78229 3.86534 3.88642 4.08590 4.19603 4.29027 4.46002 4.49762 4.55721 4.67346 4.68543 4.69679 4.71290 4.72743 4.79108 4.89348 4.92532 5.00495 5.05396 5.07879 5.11503 5.27054 5.39018 5.56369 5.84278 5.86777 6.13306 6.38802 6.79546 6.91406 6.94367 7.59327 8.00330 9.04646 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.003106 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.170030 B = 9013.620368 C = 9307.898144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.204 4.204 3 C -0.118 4.118 4 C -0.105 4.105 5 C 0.600 3.400 6 O -0.558 6.558 7 N -0.698 5.698 8 C 0.164 3.836 9 H 0.093 0.907 10 C -0.126 4.126 11 C 0.148 3.852 12 N -0.608 5.608 13 C -0.243 4.243 14 H 0.046 0.954 15 C -0.032 4.032 16 N -0.957 5.957 17 Si 0.947 3.053 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.313 1.313 21 C 0.089 3.911 22 C 0.094 3.906 23 H 0.083 0.917 24 O -0.562 6.562 25 O -0.171 6.171 26 C 0.019 3.981 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.415 0.585 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.389 0.611 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.058 -8.643 -6.147 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.205 4.205 3 C -0.139 4.139 4 C -0.157 4.157 5 C 0.388 3.612 6 O -0.439 6.439 7 N -0.347 5.347 8 C 0.060 3.940 9 H 0.111 0.889 10 C -0.166 4.166 11 C 0.023 3.977 12 N -0.332 5.332 13 C -0.373 4.373 14 H 0.064 0.936 15 C -0.226 4.226 16 N -0.603 5.603 17 Si 0.775 3.225 18 H -0.186 1.186 19 H -0.193 1.193 20 H -0.242 1.242 21 C -0.037 4.037 22 C 0.033 3.967 23 H 0.100 0.900 24 O -0.369 6.369 25 O -0.067 6.067 26 C -0.034 4.034 27 C -0.134 4.134 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.251 0.749 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.239 0.761 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -27.165 -7.760 -5.814 28.844 hybrid contribution 1.369 0.098 -0.746 1.562 sum -25.796 -7.662 -6.560 27.698 Atomic orbital electron populations 1.20289 0.86117 1.03953 1.03249 1.20602 0.99174 0.90830 1.09935 1.22081 0.90620 1.01374 0.99812 1.21722 0.95821 0.80917 1.17218 1.16792 0.81884 0.86235 0.76268 1.90848 1.86542 1.13564 1.52918 1.45895 1.04410 1.11352 1.73045 1.20899 0.82090 0.93509 0.97509 0.88921 1.22053 0.97794 1.00383 0.96334 1.20927 0.87011 0.93203 0.96591 1.44262 1.09919 1.64626 1.14427 1.18762 0.83473 1.42958 0.92104 0.93646 1.25913 0.94689 0.99925 1.02096 1.69956 1.03399 1.47539 1.39408 0.85964 0.75313 0.79853 0.81347 1.18611 1.19326 1.24182 1.22237 0.97354 0.96904 0.87218 1.22401 0.93608 0.86600 0.94125 0.89950 1.86373 1.57610 1.36528 1.56430 1.84007 1.30301 1.21135 1.71300 1.23500 0.79732 0.99133 1.00998 1.20666 1.03053 0.84299 1.05357 0.90275 0.89373 0.91103 0.82194 0.74864 0.91681 0.92130 0.92360 0.94601 0.92895 0.93917 0.91093 0.76140 0.87907 0.89623 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.16 71.24 0.72 -0.07 16 2 C -0.20 -3.61 6.14 -20.06 -0.12 -3.73 16 3 C -0.12 -2.76 10.57 22.39 0.24 -2.53 16 4 C -0.11 -2.82 7.13 24.07 0.17 -2.65 16 5 C 0.60 18.62 7.75 86.44 0.67 19.29 16 6 O -0.56 -20.42 16.53 -4.34 -0.07 -20.50 16 7 N -0.70 -20.31 5.05 -446.39 -2.25 -22.57 16 8 C 0.16 5.35 2.20 45.02 0.10 5.45 16 9 H 0.09 3.12 7.58 -2.38 -0.02 3.11 16 10 C -0.13 -4.53 5.50 30.53 0.17 -4.36 16 11 C 0.15 6.06 6.49 86.22 0.56 6.62 16 12 N -0.61 -28.39 2.69 -699.91 -1.88 -30.28 16 13 C -0.24 -13.73 10.03 84.03 0.84 -12.89 16 14 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 15 C -0.03 -1.81 5.25 84.86 0.45 -1.36 16 16 N -0.96 -59.31 13.97 21.65 0.30 -59.00 16 17 Si 0.95 45.06 24.35 68.60 1.67 46.73 16 18 H -0.26 -11.09 6.40 99.48 0.64 -10.45 16 19 H -0.27 -12.51 6.93 99.48 0.69 -11.82 16 20 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 21 C 0.09 3.54 3.85 86.36 0.33 3.87 16 22 C 0.09 3.02 3.38 30.67 0.10 3.12 16 23 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 24 O -0.56 -18.45 12.09 -148.98 -1.80 -20.25 16 25 O -0.17 -4.00 10.40 -5.13 -0.05 -4.05 16 26 C 0.02 0.32 7.31 24.97 0.18 0.50 16 27 C -0.08 -0.60 10.21 71.24 0.73 0.13 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.50 7.13 -2.39 -0.02 0.48 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.41 10.98 8.01 -92.71 -0.74 10.24 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.36 7.61 -2.39 -0.02 2.34 16 35 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 36 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.04 1.65 7.21 -2.39 -0.02 1.63 16 39 H 0.07 3.01 4.51 -2.38 -0.01 3.00 16 40 H 0.39 10.97 9.08 -74.05 -0.67 10.30 16 41 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.12 0.36 7.13 -2.39 -0.02 0.34 16 Total: -1.00 -72.98 349.08 0.60 -72.38 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.45 Total: 26.12 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.14 Total: 11.42 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.83 Total: -111.85 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.93 Total: -44.80 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -72.98 0.60 -72.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090197708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.276 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds