Wall clock time and date at job start Fri Apr 10 2020 17:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34513 * 125.78457 * 2 1 4 4 C 1.41391 * 106.83611 * 179.77034 * 3 2 1 5 5 C 1.34514 * 106.84066 * 0.22894 * 4 3 2 6 6 C 1.50701 * 125.78646 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47383 * 89.99984 * 6 5 4 8 8 O 1.21279 * 119.99940 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99697 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99666 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45564 * 34.99541 * 10 9 7 12 12 C 1.53039 * 109.45966 * 275.02127 * 10 9 7 13 13 C 1.53163 * 109.32624 * 301.36087 * 12 10 9 14 14 N 1.46925 * 108.77007 * 305.35326 * 13 12 10 15 15 C 1.36935 * 120.63688 * 233.63506 * 14 13 12 16 16 H 1.07996 * 120.00626 * 151.80148 * 15 14 13 17 17 C 1.38818 * 119.99747 * 331.80668 * 15 14 13 18 18 N 1.31627 * 119.99709 * 343.08819 * 17 15 14 19 19 Si 1.86796 * 120.00188 * 163.08899 * 17 15 14 20 20 H 1.48494 * 109.47176 * 59.99780 * 19 17 15 21 21 H 1.48501 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47060 * 299.99548 * 19 17 15 23 23 C 1.46928 * 118.73788 * 53.60984 * 14 13 12 24 24 C 1.53036 * 109.45897 * 154.96785 * 10 9 7 25 25 H 1.08997 * 109.49712 * 178.63970 * 24 10 9 26 26 O 1.42908 * 109.49776 * 298.70186 * 24 10 9 27 27 O 1.34299 * 125.79026 * 180.16000 * 2 1 3 28 28 H 1.08995 * 109.47213 * 90.00452 * 1 2 3 29 29 H 1.08998 * 109.46787 * 210.00243 * 1 2 3 30 30 H 1.09002 * 109.47354 * 329.99763 * 1 2 3 31 31 H 1.07991 * 126.58271 * 0.03406 * 3 2 1 32 32 H 1.08001 * 126.57711 * 180.25774 * 4 3 2 33 33 H 1.09004 * 109.46565 * 210.00131 * 6 5 4 34 34 H 1.08996 * 109.47156 * 329.99107 * 6 5 4 35 35 H 0.96999 * 120.00663 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.49418 * 61.29334 * 12 10 9 37 37 H 1.08988 * 109.49610 * 181.39361 * 12 10 9 38 38 H 1.09003 * 109.59061 * 185.57091 * 13 12 10 39 39 H 1.09003 * 109.71060 * 65.20633 * 13 12 10 40 40 H 0.96996 * 119.99976 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.59138 * 186.60665 * 23 14 13 42 42 H 1.09004 * 109.70308 * 66.24798 * 23 14 13 43 43 H 0.96701 * 113.99742 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0054 5 6 3.5814 -0.7121 0.0033 6 6 4.7707 -1.6378 0.0068 7 6 5.1613 -1.9484 1.4287 8 8 4.5359 -1.4653 2.3487 9 7 6.2063 -2.7622 1.6780 10 6 6.5864 -3.0637 3.0604 11 1 5.6911 -3.1167 3.6798 12 6 7.5070 -1.9610 3.5881 13 6 8.7477 -1.8659 2.6951 14 7 9.3771 -3.1912 2.6176 15 6 10.7024 -3.3532 2.9219 16 1 11.0568 -4.2986 3.3052 17 6 11.5903 -2.3021 2.7378 18 7 11.2536 -1.2817 1.9775 19 14 13.2628 -2.3359 3.5688 20 1 14.0192 -3.5289 3.1108 21 1 14.0160 -1.1058 3.2154 22 1 13.0826 -2.3993 5.0415 23 6 8.5574 -4.3397 2.2078 24 6 7.3185 -4.4068 3.1064 25 1 7.6229 -4.6203 4.1310 26 8 6.4481 -5.4407 2.6422 27 8 2.2925 -1.0894 -0.0030 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.9665 2.1204 0.0005 32 1 4.5212 1.2434 0.0108 33 1 4.5128 -2.5625 -0.5095 34 1 5.6061 -1.1579 -0.5030 35 1 6.7068 -3.1483 0.9422 36 1 6.9772 -1.0084 3.5768 37 1 7.8100 -2.1972 4.6080 38 1 9.4516 -1.1515 3.1222 39 1 8.4575 -1.5402 1.6961 40 1 11.8741 -0.5475 1.8485 41 1 9.1356 -5.2576 2.3134 42 1 8.2493 -4.2193 1.1691 43 1 6.8475 -6.3214 2.6438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090204438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:23 Heat of formation + Delta-G solvation = -74.690910 kcal Electronic energy + Delta-G solvation = -25922.285279 eV Core-core repulsion = 22161.782375 eV Total energy + Delta-G solvation = -3760.502905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.54525 -41.19780 -39.35265 -36.93542 -35.59648 -34.18536 -34.00659 -33.43967 -31.98495 -30.77572 -29.95849 -27.24308 -25.97871 -23.97350 -23.61109 -22.81694 -22.19321 -21.02014 -20.30701 -18.91551 -18.43902 -17.96198 -17.63006 -16.99746 -16.81143 -16.56052 -16.35212 -15.85292 -15.56702 -15.32528 -14.94943 -14.81343 -14.44447 -14.19307 -13.86334 -13.75448 -13.73140 -13.56196 -13.51882 -13.23595 -13.03507 -12.96036 -12.70942 -12.52196 -12.36245 -12.22597 -11.98274 -11.83393 -11.30438 -11.05589 -10.96628 -10.79058 -10.49777 -10.03884 -9.20773 -8.69507 -7.88649 -5.34623 0.70377 1.48373 1.51439 1.56936 1.61817 1.63198 1.93092 2.36852 2.50414 3.15653 3.27934 3.57161 3.66940 3.84719 3.96592 3.99966 4.06666 4.12846 4.23929 4.27822 4.38556 4.42608 4.53474 4.59512 4.69401 4.72401 4.86166 4.87342 4.91126 4.96140 5.04869 5.07916 5.15311 5.29061 5.41940 5.52402 5.63877 5.64823 5.71046 6.21708 6.36469 6.54925 6.89374 7.13095 7.23769 7.81978 8.32979 9.17324 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.003268 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.314079 B = 8566.258541 C = 9378.181026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.226 4.226 4 C -0.209 4.209 5 C -0.013 4.013 6 C -0.055 4.055 7 C 0.513 3.487 8 O -0.582 6.582 9 N -0.698 5.698 10 C 0.169 3.831 11 H 0.069 0.931 12 C -0.140 4.140 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.265 4.265 16 H 0.071 0.929 17 C -0.045 4.045 18 N -0.930 5.930 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.281 1.281 23 C 0.119 3.881 24 C 0.096 3.904 25 H 0.068 0.932 26 O -0.571 6.571 27 O -0.191 6.191 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.410 0.590 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.009 0.991 40 H 0.250 0.750 41 H 0.069 0.931 42 H 0.030 0.970 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 -1.882 -5.214 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C -0.245 4.245 4 C -0.228 4.228 5 C -0.063 4.063 6 C -0.094 4.094 7 C 0.300 3.700 8 O -0.462 6.462 9 N -0.350 5.350 10 C 0.064 3.936 11 H 0.087 0.913 12 C -0.180 4.180 13 C 0.060 3.940 14 N -0.326 5.326 15 C -0.395 4.395 16 H 0.089 0.911 17 C -0.241 4.241 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.207 1.207 23 C -0.007 4.007 24 C 0.035 3.965 25 H 0.085 0.915 26 O -0.378 6.378 27 O -0.089 6.089 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.186 0.814 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.129 -1.247 -4.671 17.798 hybrid contribution 1.960 -0.046 0.252 1.977 sum -15.168 -1.293 -4.420 15.852 Atomic orbital electron populations 1.20478 0.82304 1.05011 1.04827 1.23244 0.95675 0.83694 1.04971 1.21868 0.92267 1.00534 1.09812 1.21830 0.99294 0.94044 1.07678 1.21780 0.82881 0.94486 1.07165 1.20173 0.93862 1.01315 0.94068 1.20867 0.79470 0.77922 0.91759 1.90679 1.54606 1.53085 1.47857 1.45835 1.31709 1.48506 1.08926 1.20667 0.96559 0.93046 0.83358 0.91261 1.22377 0.97277 0.97857 1.00482 1.20472 0.91017 0.87446 0.95067 1.44158 1.06346 1.03595 1.78546 1.19454 0.84441 0.99588 1.36021 0.91115 1.25755 1.01010 0.98440 0.98939 1.70155 1.37277 1.10994 1.39098 0.85400 0.80087 0.76731 0.78557 1.19941 1.22382 1.20687 1.21671 0.91638 0.91706 0.95705 1.22338 0.89591 0.86587 0.98019 0.91458 1.86457 1.42360 1.19923 1.89048 1.83901 1.16709 1.36294 1.71980 0.88281 0.90433 0.87563 0.81439 0.82944 0.84674 0.83534 0.75333 0.92577 0.91474 0.92938 0.97286 0.94127 0.91287 0.95197 0.75447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.42 71.24 0.74 -0.27 16 2 C -0.03 -0.64 7.32 24.83 0.18 -0.46 16 3 C -0.23 -5.61 10.81 22.19 0.24 -5.37 16 4 C -0.21 -5.89 10.81 22.19 0.24 -5.65 16 5 C -0.01 -0.38 5.82 24.83 0.14 -0.24 16 6 C -0.06 -1.36 6.23 29.10 0.18 -1.18 16 7 C 0.51 16.86 7.79 87.66 0.68 17.54 16 8 O -0.58 -24.04 15.70 -3.03 -0.05 -24.09 16 9 N -0.70 -22.17 4.16 -442.41 -1.84 -24.01 16 10 C 0.17 5.88 2.47 45.02 0.11 5.99 16 11 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 12 C -0.14 -5.47 5.77 30.66 0.18 -5.30 16 13 C 0.19 8.54 5.04 86.35 0.44 8.98 16 14 N -0.60 -27.62 2.99 -699.14 -2.09 -29.71 16 15 C -0.27 -13.59 9.58 84.04 0.81 -12.79 16 16 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 17 C -0.05 -2.41 4.92 84.86 0.42 -2.00 16 18 N -0.93 -52.65 11.20 21.65 0.24 -52.40 16 19 Si 0.96 43.13 29.59 68.60 2.03 45.16 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 C 0.12 4.25 5.84 86.36 0.50 4.75 16 24 C 0.10 3.00 3.36 30.67 0.10 3.10 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 O -0.57 -15.08 13.21 -148.98 -1.97 -17.05 16 27 O -0.19 -5.70 10.65 -2.47 -0.03 -5.73 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.17 3.17 8.06 -2.92 -0.02 3.15 16 32 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.14 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.41 11.82 6.87 -92.71 -0.64 11.18 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 39 H 0.01 0.43 7.74 -2.39 -0.02 0.42 16 40 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 41 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 42 H 0.03 1.05 6.65 -2.38 -0.02 1.03 16 43 H 0.40 6.83 9.08 -74.06 -0.67 6.15 16 Total: -1.00 -71.62 354.34 0.99 -70.63 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.27 Total: 30.07 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.97 Total: 7.13 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.69 Total: -106.12 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.04 Total: -46.86 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -71.62 0.99 -70.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090204438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.062 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds