Wall clock time and date at job start Fri Apr 10 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34506 * 125.79011 * 2 1 4 4 C 1.41382 * 106.84272 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.83779 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.78919 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47205 * 89.99878 * 6 5 4 8 8 O 1.21273 * 120.00130 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99936 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.44772 * 325.02378 * 10 9 7 12 12 C 1.53037 * 109.46627 * 84.99588 * 10 9 7 13 13 C 1.53192 * 109.31110 * 58.65486 * 12 10 9 14 14 N 1.46918 * 108.77632 * 54.63797 * 13 12 10 15 15 C 1.36941 * 120.63027 * 126.36610 * 14 13 12 16 16 H 1.08005 * 119.99986 * 209.60433 * 15 14 13 17 17 C 1.38813 * 119.99988 * 29.60310 * 15 14 13 18 18 N 1.31620 * 120.00175 * 198.89704 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 18.90480 * 17 15 14 20 20 H 1.48506 * 109.46784 * 273.06094 * 19 17 15 21 21 H 1.48498 * 109.47587 * 33.05795 * 19 17 15 22 22 H 1.48499 * 109.47184 * 153.06380 * 19 17 15 23 23 C 1.46927 * 118.73922 * 306.64435 * 14 13 12 24 24 C 1.52759 * 109.00742 * 53.30794 * 23 14 13 25 25 H 1.08994 * 109.36166 * 65.50156 * 24 23 14 26 26 O 1.42906 * 109.58672 * 185.53686 * 24 23 14 27 27 O 1.34302 * 125.78518 * 180.34737 * 2 1 3 28 28 H 1.08993 * 109.47003 * 90.00151 * 1 2 3 29 29 H 1.09001 * 109.47185 * 210.00016 * 1 2 3 30 30 H 1.09005 * 109.46800 * 330.00049 * 1 2 3 31 31 H 1.08001 * 126.58335 * 0.05132 * 3 2 1 32 32 H 1.08001 * 126.58541 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47387 * 329.99556 * 6 5 4 34 34 H 1.08998 * 109.47201 * 209.99894 * 6 5 4 35 35 H 0.97007 * 120.00201 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.49296 * 298.70700 * 12 10 9 37 37 H 1.08995 * 109.53071 * 178.62472 * 12 10 9 38 38 H 1.08999 * 109.58628 * 294.85030 * 13 12 10 39 39 H 1.09003 * 109.70159 * 174.49543 * 13 12 10 40 40 H 0.96998 * 119.99750 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.58579 * 173.14259 * 23 14 13 42 42 H 1.08998 * 109.58446 * 293.56575 * 23 14 13 43 43 H 0.96697 * 113.99997 * 299.97602 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7705 -1.6380 -0.0003 7 6 5.1670 -1.9463 1.4206 8 8 4.5450 -1.4624 2.3423 9 7 6.2130 -2.7597 1.6669 10 6 6.5981 -3.0599 3.0481 11 1 6.4283 -2.1818 3.6712 12 6 5.7561 -4.2263 3.5703 13 6 5.9709 -5.4483 2.6718 14 7 7.4105 -5.7308 2.5939 15 6 7.8943 -6.9765 2.8931 16 1 8.8896 -7.0865 3.2979 17 6 7.1055 -8.0980 2.6760 18 7 7.3894 -9.2300 3.2845 19 14 5.6413 -8.0004 1.5202 20 1 4.4484 -7.5328 2.2709 21 1 5.9402 -7.0466 0.4219 22 1 5.3712 -9.3442 0.9489 23 6 8.3220 -4.6497 2.1949 24 6 8.0803 -3.4382 3.0934 25 1 8.3616 -3.6855 4.1170 26 8 8.8678 -2.3372 2.6352 27 8 2.2924 -1.0895 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9666 2.1204 0.0008 32 1 4.5213 1.2432 -0.0012 33 1 5.6039 -1.1590 -0.5143 34 1 4.5105 -2.5635 -0.5139 35 1 6.7103 -3.1471 0.9296 36 1 4.7024 -3.9476 3.5597 37 1 6.0586 -4.4664 4.5895 38 1 5.5848 -5.2405 1.6739 39 1 5.4517 -6.3095 3.0925 40 1 6.8379 -10.0135 3.1330 41 1 9.3542 -4.9833 2.3034 42 1 8.1316 -4.3756 1.1573 43 1 9.8198 -2.5068 2.6371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090204439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:26 Heat of formation + Delta-G solvation = -45.216816 kcal Electronic energy + Delta-G solvation = -26085.394010 eV Core-core repulsion = 22326.169198 eV Total energy + Delta-G solvation = -3759.224812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.62884 -40.00790 -38.14017 -35.69136 -34.19975 -33.23272 -33.10556 -31.96019 -30.75463 -29.80708 -29.06376 -25.64812 -24.90175 -22.74730 -22.14673 -21.82928 -21.04976 -20.07908 -19.08742 -17.52965 -17.18290 -16.74488 -16.54282 -15.99526 -15.62390 -15.25942 -15.17510 -14.57820 -14.20184 -14.06242 -13.88288 -13.70340 -13.36800 -13.11365 -12.84965 -12.79279 -12.64543 -12.54723 -12.36959 -12.17924 -11.90061 -11.69247 -11.56530 -11.26131 -11.20766 -10.38036 -10.13740 -10.02901 -9.90776 -9.74115 -9.72703 -9.59001 -8.86249 -8.64773 -8.31308 -7.08980 -6.05379 -3.46115 1.63263 2.53878 2.72752 2.81863 3.25533 3.40590 3.42806 3.44701 4.26068 4.43316 4.43385 4.76312 4.85611 4.91585 4.97907 4.99802 5.15087 5.19487 5.23577 5.24050 5.29618 5.41703 5.50182 5.51929 5.66311 5.74833 5.76042 5.90837 5.96817 6.09015 6.16746 6.30416 6.32873 6.42273 6.49557 6.58642 6.64630 6.79434 7.13480 7.66484 7.74006 7.88055 8.21722 8.36537 8.80349 9.59376 9.94883 11.10189 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.003919 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.563033 B = 7143.740140 C = 8279.152056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 C -0.212 4.212 4 C -0.195 4.195 5 C 0.011 3.989 6 C -0.064 4.064 7 C 0.514 3.486 8 O -0.536 6.536 9 N -0.708 5.708 10 C 0.166 3.834 11 H 0.085 0.915 12 C -0.145 4.145 13 C 0.124 3.876 14 N -0.601 5.601 15 C -0.267 4.267 16 H 0.086 0.914 17 C 0.028 3.972 18 N -0.906 5.906 19 Si 0.886 3.114 20 H -0.285 1.285 21 H -0.273 1.273 22 H -0.302 1.302 23 C 0.121 3.879 24 C 0.076 3.924 25 H 0.071 0.929 26 O -0.569 6.569 27 O -0.170 6.170 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.078 0.922 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 18.041 -7.628 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.231 4.231 4 C -0.214 4.214 5 C -0.040 4.040 6 C -0.104 4.104 7 C 0.300 3.700 8 O -0.413 6.413 9 N -0.360 5.360 10 C 0.061 3.939 11 H 0.103 0.897 12 C -0.186 4.186 13 C -0.001 4.001 14 N -0.326 5.326 15 C -0.395 4.395 16 H 0.103 0.897 17 C -0.171 4.171 18 N -0.548 5.548 19 Si 0.717 3.283 20 H -0.213 1.213 21 H -0.198 1.198 22 H -0.230 1.230 23 C -0.006 4.006 24 C 0.015 3.985 25 H 0.089 0.911 26 O -0.374 6.374 27 O -0.067 6.067 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.198 18.164 -6.994 20.753 hybrid contribution 0.082 -0.405 -0.869 0.962 sum -7.116 17.759 -7.863 20.684 Atomic orbital electron populations 1.20284 0.85275 1.04055 1.03263 1.22383 0.93932 0.84186 1.06042 1.21495 0.92683 0.99211 1.09714 1.21465 0.98188 0.93632 1.08141 1.21429 0.82565 0.93820 1.06150 1.20117 0.93627 1.00217 0.96390 1.20255 0.80417 0.78721 0.90652 1.90714 1.52747 1.51846 1.45978 1.45932 1.32152 1.48614 1.09342 1.20824 0.92063 0.98253 0.82734 0.89712 1.22405 0.99408 0.95650 1.01103 1.21404 0.86007 0.96254 0.96421 1.44271 1.00904 1.08309 1.79115 1.18869 1.02668 0.80821 1.37176 0.89669 1.25310 0.98345 0.95020 0.98454 1.69809 1.40640 1.01859 1.42459 0.86957 0.82896 0.75919 0.82551 1.21304 1.19821 1.23022 1.21487 0.95735 0.88233 0.95138 1.22608 0.90107 0.86888 0.98857 0.91118 1.86476 1.21508 1.39915 1.89479 1.83934 1.16248 1.35103 1.71399 0.90273 0.90550 0.89450 0.83655 0.83640 0.85875 0.87112 0.76210 0.91411 0.90409 0.95659 0.90426 0.92560 0.91247 0.95539 0.77707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.01 0.38 -0.21 16 2 C -0.02 -0.19 7.32 -35.62 -0.26 -0.45 16 3 C -0.21 -2.54 10.81 -39.71 -0.43 -2.96 16 4 C -0.20 -2.51 10.81 -39.70 -0.43 -2.94 16 5 C 0.01 0.15 5.81 -35.63 -0.21 -0.06 16 6 C -0.06 -0.75 6.23 -29.04 -0.18 -0.93 16 7 C 0.51 7.95 7.79 -10.99 -0.09 7.87 16 8 O -0.54 -10.35 15.69 5.56 0.09 -10.26 16 9 N -0.71 -10.61 4.15 -53.77 -0.22 -10.84 16 10 C 0.17 2.73 2.47 -67.89 -0.17 2.56 16 11 H 0.08 1.48 7.57 -51.93 -0.39 1.08 16 12 C -0.15 -2.65 5.77 -26.61 -0.15 -2.80 16 13 C 0.12 2.62 3.95 -3.71 -0.01 2.60 16 14 N -0.60 -13.25 2.75 -172.58 -0.47 -13.72 16 15 C -0.27 -7.09 10.03 -15.06 -0.15 -7.24 16 16 H 0.09 2.41 8.06 -52.48 -0.42 1.98 16 17 C 0.03 0.80 5.25 -17.43 -0.09 0.70 16 18 N -0.91 -27.01 13.97 55.49 0.78 -26.23 16 19 Si 0.89 21.85 24.35 -169.99 -4.14 17.71 16 20 H -0.29 -6.87 6.40 56.52 0.36 -6.51 16 21 H -0.27 -6.54 6.93 56.52 0.39 -6.15 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 23 C 0.12 2.11 5.82 -3.93 -0.02 2.09 16 24 C 0.08 1.17 3.34 -26.83 -0.09 1.08 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 O -0.57 -7.61 13.21 -35.23 -0.47 -8.08 16 27 O -0.17 -2.53 10.65 5.71 0.06 -2.47 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 5.46 6.88 -40.82 -0.28 5.18 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.03 0.53 6.80 -51.93 -0.35 0.17 16 39 H 0.08 1.83 4.51 -51.93 -0.23 1.59 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.18 7.93 -51.92 -0.41 0.77 16 42 H 0.03 0.44 6.64 -51.93 -0.34 0.10 16 43 H 0.38 3.49 9.08 45.56 0.41 3.91 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -34.41 348.08 -6.48 -40.89 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.44 Total: 8.44 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.91 Total: -0.69 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.08 Total: -50.79 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.32 Total: -20.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.41 -6.48 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090204439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.329 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds