Wall clock time and date at job start Fri Apr 10 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34506 * 125.79011 * 2 1 4 4 C 1.41382 * 106.84272 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.83779 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.78919 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47205 * 89.99878 * 6 5 4 8 8 O 1.21273 * 120.00130 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99936 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.44772 * 325.02378 * 10 9 7 12 12 C 1.53037 * 109.46627 * 84.99588 * 10 9 7 13 13 C 1.53192 * 109.31110 * 58.65486 * 12 10 9 14 14 N 1.46918 * 108.77632 * 54.63797 * 13 12 10 15 15 C 1.36941 * 120.63027 * 126.36610 * 14 13 12 16 16 H 1.08005 * 119.99986 * 209.60433 * 15 14 13 17 17 C 1.38813 * 119.99988 * 29.60310 * 15 14 13 18 18 N 1.31620 * 120.00175 * 198.89704 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 18.90480 * 17 15 14 20 20 H 1.48506 * 109.46784 * 273.06094 * 19 17 15 21 21 H 1.48498 * 109.47587 * 33.05795 * 19 17 15 22 22 H 1.48499 * 109.47184 * 153.06380 * 19 17 15 23 23 C 1.46927 * 118.73922 * 306.64435 * 14 13 12 24 24 C 1.52759 * 109.00742 * 53.30794 * 23 14 13 25 25 H 1.08994 * 109.36166 * 65.50156 * 24 23 14 26 26 O 1.42906 * 109.58672 * 185.53686 * 24 23 14 27 27 O 1.34302 * 125.78518 * 180.34737 * 2 1 3 28 28 H 1.08993 * 109.47003 * 90.00151 * 1 2 3 29 29 H 1.09001 * 109.47185 * 210.00016 * 1 2 3 30 30 H 1.09005 * 109.46800 * 330.00049 * 1 2 3 31 31 H 1.08001 * 126.58335 * 0.05132 * 3 2 1 32 32 H 1.08001 * 126.58541 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47387 * 329.99556 * 6 5 4 34 34 H 1.08998 * 109.47201 * 209.99894 * 6 5 4 35 35 H 0.97007 * 120.00201 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.49296 * 298.70700 * 12 10 9 37 37 H 1.08995 * 109.53071 * 178.62472 * 12 10 9 38 38 H 1.08999 * 109.58628 * 294.85030 * 13 12 10 39 39 H 1.09003 * 109.70159 * 174.49543 * 13 12 10 40 40 H 0.96998 * 119.99750 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.58579 * 173.14259 * 23 14 13 42 42 H 1.08998 * 109.58446 * 293.56575 * 23 14 13 43 43 H 0.96697 * 113.99997 * 299.97602 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7705 -1.6380 -0.0003 7 6 5.1670 -1.9463 1.4206 8 8 4.5450 -1.4624 2.3423 9 7 6.2130 -2.7597 1.6669 10 6 6.5981 -3.0599 3.0481 11 1 6.4283 -2.1818 3.6712 12 6 5.7561 -4.2263 3.5703 13 6 5.9709 -5.4483 2.6718 14 7 7.4105 -5.7308 2.5939 15 6 7.8943 -6.9765 2.8931 16 1 8.8896 -7.0865 3.2979 17 6 7.1055 -8.0980 2.6760 18 7 7.3894 -9.2300 3.2845 19 14 5.6413 -8.0004 1.5202 20 1 4.4484 -7.5328 2.2709 21 1 5.9402 -7.0466 0.4219 22 1 5.3712 -9.3442 0.9489 23 6 8.3220 -4.6497 2.1949 24 6 8.0803 -3.4382 3.0934 25 1 8.3616 -3.6855 4.1170 26 8 8.8678 -2.3372 2.6352 27 8 2.2924 -1.0895 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9666 2.1204 0.0008 32 1 4.5213 1.2432 -0.0012 33 1 5.6039 -1.1590 -0.5143 34 1 4.5105 -2.5635 -0.5139 35 1 6.7103 -3.1471 0.9296 36 1 4.7024 -3.9476 3.5597 37 1 6.0586 -4.4664 4.5895 38 1 5.5848 -5.2405 1.6739 39 1 5.4517 -6.3095 3.0925 40 1 6.8379 -10.0135 3.1330 41 1 9.3542 -4.9833 2.3034 42 1 8.1316 -4.3756 1.1573 43 1 9.8198 -2.5068 2.6371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090204439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:26 Heat of formation + Delta-G solvation = -71.674613 kcal Electronic energy + Delta-G solvation = -26086.541306 eV Core-core repulsion = 22326.169198 eV Total energy + Delta-G solvation = -3760.372108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.55528 -41.30646 -39.49047 -37.07548 -35.65915 -34.21089 -34.04474 -33.72380 -32.16670 -30.99913 -30.30303 -27.24080 -25.97170 -24.23977 -23.76993 -22.83029 -22.22298 -21.03543 -20.53203 -18.99742 -18.49737 -18.02996 -17.65549 -17.30896 -16.90673 -16.73565 -16.40147 -16.03710 -15.55381 -15.38099 -15.23720 -14.89651 -14.42587 -14.24248 -14.09644 -13.90486 -13.74699 -13.71829 -13.55486 -13.44145 -13.18206 -13.02553 -12.94156 -12.80241 -12.53500 -12.20526 -11.86222 -11.61430 -11.37773 -11.20827 -11.01765 -10.79414 -10.67430 -10.09772 -9.21654 -8.94664 -8.18981 -5.54812 0.69586 1.30046 1.39191 1.47705 1.59043 1.62386 1.92788 2.33148 2.39516 2.93328 3.11764 3.37156 3.55258 3.76547 3.91237 3.97870 4.01141 4.11453 4.12825 4.22348 4.24587 4.30776 4.41262 4.51258 4.57586 4.69435 4.72478 4.83711 4.84909 4.86989 4.91049 4.92804 5.05693 5.06653 5.18580 5.28339 5.47466 5.65138 5.83966 6.11099 6.21825 6.51010 6.80578 6.93021 7.20564 7.56821 7.96586 9.00384 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.003919 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.563033 B = 7143.740140 C = 8279.152056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.029 4.029 3 C -0.225 4.225 4 C -0.203 4.203 5 C -0.017 4.017 6 C -0.056 4.056 7 C 0.513 3.487 8 O -0.579 6.579 9 N -0.702 5.702 10 C 0.169 3.831 11 H 0.077 0.923 12 C -0.136 4.136 13 C 0.125 3.875 14 N -0.611 5.611 15 C -0.248 4.248 16 H 0.059 0.941 17 C -0.029 4.029 18 N -0.955 5.955 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.256 1.256 22 H -0.312 1.312 23 C 0.119 3.881 24 C 0.096 3.904 25 H 0.066 0.934 26 O -0.567 6.567 27 O -0.196 6.196 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 20.440 -9.344 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.243 4.243 4 C -0.222 4.222 5 C -0.067 4.067 6 C -0.096 4.096 7 C 0.300 3.700 8 O -0.459 6.459 9 N -0.354 5.354 10 C 0.064 3.936 11 H 0.096 0.904 12 C -0.177 4.177 13 C 0.000 4.000 14 N -0.337 5.337 15 C -0.378 4.378 16 H 0.077 0.923 17 C -0.224 4.224 18 N -0.601 5.601 19 Si 0.771 3.229 20 H -0.207 1.207 21 H -0.180 1.180 22 H -0.241 1.241 23 C -0.006 4.006 24 C 0.034 3.966 25 H 0.084 0.916 26 O -0.374 6.374 27 O -0.094 6.094 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.187 0.813 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.145 0.855 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.488 20.616 -8.748 23.614 hybrid contribution 0.252 -1.034 -0.283 1.101 sum -7.236 19.582 -9.031 22.746 Atomic orbital electron populations 1.20474 0.82722 1.04905 1.04721 1.23218 0.95601 0.83854 1.05231 1.21884 0.92453 1.00387 1.09612 1.21832 0.99256 0.93728 1.07395 1.21860 0.82806 0.94702 1.07334 1.20216 0.94159 1.01156 0.94023 1.20890 0.79578 0.77713 0.91793 1.90696 1.54060 1.53433 1.47683 1.45868 1.32211 1.48468 1.08890 1.20650 0.92427 0.96927 0.83614 0.90446 1.22265 0.99763 0.95203 1.00424 1.21346 0.85152 0.96258 0.97204 1.44322 1.01956 1.07868 1.79561 1.18840 1.01304 0.82664 1.34985 0.92331 1.25899 1.01423 0.94894 1.00213 1.69937 1.42643 1.02783 1.44705 0.86036 0.80282 0.75562 0.80993 1.20712 1.18034 1.24106 1.21679 0.94962 0.87446 0.96559 1.22195 0.89809 0.86456 0.98096 0.91604 1.86451 1.23205 1.38590 1.89164 1.83919 1.17028 1.36470 1.72002 0.88422 0.90799 0.87450 0.81334 0.82125 0.82331 0.85494 0.75113 0.91643 0.90780 0.94661 0.93152 0.92925 0.90886 0.93410 0.75292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.42 71.24 0.74 -0.29 16 2 C -0.03 -0.69 7.32 24.83 0.18 -0.50 16 3 C -0.22 -4.99 10.81 22.19 0.24 -4.75 16 4 C -0.20 -4.88 10.81 22.19 0.24 -4.64 16 5 C -0.02 -0.45 5.81 24.83 0.14 -0.31 16 6 C -0.06 -1.18 6.23 29.10 0.18 -1.00 16 7 C 0.51 14.79 7.79 87.66 0.68 15.48 16 8 O -0.58 -21.79 15.69 -3.01 -0.05 -21.84 16 9 N -0.70 -19.15 4.15 -442.42 -1.84 -20.99 16 10 C 0.17 5.23 2.47 45.02 0.11 5.34 16 11 H 0.08 2.58 7.57 -2.39 -0.02 2.56 16 12 C -0.14 -4.81 5.77 30.67 0.18 -4.64 16 13 C 0.13 5.10 3.95 86.36 0.34 5.44 16 14 N -0.61 -26.14 2.75 -699.93 -1.92 -28.07 16 15 C -0.25 -13.21 10.03 84.03 0.84 -12.37 16 16 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 17 C -0.03 -1.63 5.25 84.86 0.45 -1.19 16 18 N -0.96 -58.48 13.97 21.65 0.30 -58.18 16 19 Si 0.94 45.17 24.35 68.60 1.67 46.84 16 20 H -0.28 -13.04 6.40 99.48 0.64 -12.40 16 21 H -0.26 -11.42 6.93 99.48 0.69 -10.73 16 22 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 23 C 0.12 3.85 5.82 86.22 0.50 4.35 16 24 C 0.10 2.70 3.34 30.53 0.10 2.81 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 O -0.57 -13.18 13.21 -148.98 -1.97 -15.15 16 27 O -0.20 -5.66 10.65 -2.49 -0.03 -5.68 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.41 9.66 6.88 -92.70 -0.64 9.02 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.04 1.38 6.80 -2.39 -0.02 1.36 16 39 H 0.05 2.34 4.51 -2.39 -0.01 2.32 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.07 2.32 7.93 -2.38 -0.02 2.30 16 42 H 0.05 1.39 6.64 -2.39 -0.02 1.38 16 43 H 0.40 5.87 9.08 -74.06 -0.67 5.19 16 Total: -1.00 -75.63 348.08 0.75 -74.88 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.35 Total: 24.44 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.93 Total: 3.75 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.46 Total: -107.23 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.04 Total: -42.68 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -75.63 0.75 -74.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090204439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.209 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds