Wall clock time and date at job start Fri Apr 10 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47295 * 2 1 4 4 O 1.33656 * 125.80123 * 270.13884 * 3 2 1 5 5 C 1.34214 * 110.91164 * 180.26470 * 4 3 2 6 6 C 1.34179 * 109.12056 * 359.76725 * 5 4 3 7 7 C 1.36419 * 125.80656 * 89.99925 * 3 2 1 8 8 C 1.47375 * 127.18640 * 0.02562 * 7 3 2 9 9 O 1.21613 * 120.00695 * 359.70267 * 8 7 3 10 10 N 1.34777 * 119.99932 * 179.70977 * 8 7 3 11 11 C 1.46496 * 120.00299 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46080 * 35.02914 * 11 10 8 13 13 C 1.53040 * 109.45014 * 275.05837 * 11 10 8 14 14 C 1.53188 * 109.31207 * 301.35075 * 13 11 10 15 15 N 1.46931 * 108.77610 * 305.36319 * 14 13 11 16 16 C 1.36931 * 120.62988 * 233.58339 * 15 14 13 17 17 H 1.08002 * 120.00177 * 27.69097 * 16 15 14 18 18 C 1.38811 * 120.00200 * 207.68253 * 16 15 14 19 19 N 1.31625 * 119.99867 * 17.37448 * 18 16 15 20 20 Si 1.86802 * 120.00239 * 197.36751 * 18 16 15 21 21 H 1.48498 * 109.46798 * 60.00884 * 20 18 16 22 22 H 1.48505 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47420 * 300.00250 * 20 18 16 24 24 C 1.46924 * 118.73662 * 53.61218 * 15 14 13 25 25 C 1.53046 * 109.46107 * 154.99549 * 11 10 8 26 26 H 1.08994 * 109.49912 * 178.62559 * 25 11 10 27 27 O 1.42903 * 109.49742 * 298.69114 * 25 11 10 28 28 H 1.08997 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46950 * 299.99823 * 1 2 3 30 30 H 1.09000 * 109.47104 * 59.99954 * 1 2 3 31 31 H 1.09000 * 109.47080 * 239.99636 * 2 1 3 32 32 H 1.09004 * 109.47251 * 119.99566 * 2 1 3 33 33 H 1.08000 * 125.44149 * 179.76385 * 5 4 3 34 34 H 1.08005 * 127.01885 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00074 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.49461 * 61.30166 * 13 11 10 37 37 H 1.08998 * 109.49707 * 181.40285 * 13 11 10 38 38 H 1.09001 * 109.58622 * 65.15104 * 14 13 11 39 39 H 1.09005 * 109.58929 * 185.57566 * 14 13 11 40 40 H 0.96995 * 120.00276 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58587 * 186.60371 * 24 15 14 42 42 H 1.08998 * 109.58806 * 66.17685 * 24 15 14 43 43 H 0.96703 * 113.99300 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2905 2.1588 -1.0840 5 6 2.7291 3.3794 -0.7392 6 6 2.7641 3.4721 0.5990 7 6 2.2984 2.1732 1.1064 8 6 2.1551 1.7667 2.5157 9 8 1.7554 0.6511 2.7892 10 7 2.4670 2.6312 3.5014 11 6 2.3241 2.2273 4.9024 12 1 2.5717 1.1706 5.0027 13 6 0.8804 2.4580 5.3545 14 6 0.5251 3.9379 5.1797 15 7 1.5185 4.7505 5.8949 16 6 1.1240 5.6827 6.8170 17 1 0.1970 5.5511 7.3554 18 6 1.9154 6.7969 7.0599 19 7 2.8452 7.1448 6.1956 20 14 1.6610 7.8027 8.6134 21 1 1.8804 6.9407 9.8025 22 1 2.6251 8.9320 8.6354 23 1 0.2750 8.3352 8.6369 24 6 2.9433 4.5442 5.6014 25 6 3.2716 3.0575 5.7715 26 1 3.1482 2.7746 6.8169 27 8 4.6215 2.8180 5.3687 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0093 4.1621 -1.4286 34 1 3.0719 4.3263 1.1838 35 1 2.7861 3.5209 3.2833 36 1 0.2083 1.8487 4.7505 37 1 0.7792 2.1812 6.4039 38 1 0.5378 4.1940 4.1203 39 1 -0.4664 4.1268 5.5915 40 1 3.3980 7.9236 6.3651 41 1 3.5475 5.1331 6.2914 42 1 3.1532 4.8498 4.5764 43 1 5.2777 3.3132 5.8780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090232252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:31 Heat of formation + Delta-G solvation = -55.635347 kcal Electronic energy + Delta-G solvation = -26534.486403 eV Core-core repulsion = 22774.809809 eV Total energy + Delta-G solvation = -3759.676593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53710 -39.61459 -37.73712 -35.29155 -34.30927 -33.79671 -32.85633 -31.72113 -29.66691 -28.94643 -28.61906 -25.46917 -24.15520 -22.97637 -22.29816 -21.83135 -21.01124 -19.63947 -18.65415 -17.86674 -16.95489 -16.56437 -16.24335 -15.84769 -15.32425 -14.95588 -14.69071 -14.47053 -14.32066 -14.01379 -13.70645 -13.49881 -13.34025 -12.93466 -12.73023 -12.65442 -12.29046 -12.24975 -11.83190 -11.69992 -11.58631 -11.08267 -11.05800 -10.98545 -10.83017 -10.46193 -10.23361 -10.00836 -9.75321 -9.70142 -9.54021 -9.33421 -8.70729 -8.59275 -8.42766 -6.80088 -5.90941 -3.33865 1.46148 2.12110 2.81087 3.31714 3.37859 3.39192 3.62455 3.64792 4.38876 4.48263 4.60241 4.87273 4.98406 5.07516 5.20979 5.24094 5.38129 5.40103 5.45060 5.54288 5.70438 5.72195 5.81332 5.83963 5.93322 5.96774 6.03822 6.06893 6.18545 6.26608 6.33828 6.45649 6.46906 6.71230 6.81687 6.98590 7.04308 7.06606 7.38984 7.68804 7.96541 8.09361 8.32665 8.60616 9.07761 9.70702 10.26616 11.17221 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.003815 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.176526 B = 7337.247269 C = 7618.283816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.071 3.929 4 O -0.178 6.178 5 C -0.045 4.045 6 C -0.183 4.183 7 C -0.235 4.235 8 C 0.588 3.412 9 O -0.554 6.554 10 N -0.696 5.696 11 C 0.166 3.834 12 H 0.079 0.921 13 C -0.144 4.144 14 C 0.145 3.855 15 N -0.587 5.587 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.147 3.853 25 C 0.066 3.934 26 H 0.062 0.938 27 O -0.572 6.572 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.207 0.793 34 H 0.158 0.842 35 H 0.404 0.596 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.255 0.745 41 H 0.093 0.907 42 H 0.023 0.977 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -9.407 -11.004 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C 0.018 3.982 4 O -0.075 6.075 5 C -0.110 4.110 6 C -0.202 4.202 7 C -0.239 4.239 8 C 0.376 3.624 9 O -0.435 6.435 10 N -0.346 5.346 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.184 4.184 14 C 0.019 3.981 15 N -0.312 5.312 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.020 3.980 25 C 0.005 3.995 26 H 0.080 0.920 27 O -0.377 6.377 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.223 0.777 34 H 0.176 0.824 35 H 0.241 0.759 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.041 0.959 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.037 -10.505 -11.490 15.568 hybrid contribution 0.501 1.862 1.243 2.294 sum 0.537 -8.643 -10.247 13.416 Atomic orbital electron populations 1.21683 0.93472 1.02424 1.02443 1.20350 0.96912 0.86500 1.04832 1.22799 0.97857 0.94394 0.83139 1.83735 1.65397 1.23297 1.35046 1.23813 1.04596 0.86237 0.96398 1.22977 1.04669 0.97978 0.94578 1.21252 1.12804 0.95683 0.94153 1.17149 0.77160 0.84421 0.83689 1.90700 1.48027 1.20656 1.84104 1.45783 1.66027 1.17180 1.05635 1.20810 0.94704 0.98737 0.79581 0.90278 1.22398 0.95022 0.99768 1.01244 1.20924 0.93382 0.88690 0.95105 1.43956 0.99729 1.41749 1.45719 1.19173 1.07342 0.98875 1.13106 0.91446 1.25039 0.99705 0.96333 0.98407 1.70006 1.24233 1.26723 1.33776 0.86349 0.77567 0.79424 0.83326 1.20971 1.21600 1.20803 1.21389 0.86909 0.89898 0.99822 1.22945 0.80912 0.98983 0.96622 0.92015 1.86425 1.16290 1.70972 1.64005 0.91538 0.91687 0.92797 0.90368 0.86829 0.77670 0.82433 0.75949 0.91673 0.91147 0.96183 0.92502 0.93484 0.88934 0.95873 0.77791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 37.15 0.37 -1.17 16 2 C -0.05 -0.57 5.94 -27.89 -0.17 -0.74 16 3 C 0.07 0.98 6.63 -34.97 -0.23 0.75 16 4 O -0.18 -2.27 10.52 7.64 0.08 -2.19 16 5 C -0.04 -0.50 12.03 29.30 0.35 -0.15 16 6 C -0.18 -2.44 10.60 -37.46 -0.40 -2.84 16 7 C -0.23 -3.62 6.31 -103.28 -0.65 -4.28 16 8 C 0.59 10.34 7.78 -12.54 -0.10 10.24 16 9 O -0.55 -10.56 14.51 5.27 0.08 -10.49 16 10 N -0.70 -12.26 4.15 -54.86 -0.23 -12.49 16 11 C 0.17 3.03 2.47 -67.89 -0.17 2.86 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 13 C -0.14 -2.60 5.77 -26.61 -0.15 -2.76 16 14 C 0.15 2.98 6.26 -3.71 -0.02 2.96 16 15 N -0.59 -13.84 2.99 -172.32 -0.52 -14.36 16 16 C -0.26 -6.68 9.59 -15.06 -0.14 -6.83 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 19 N -0.90 -24.70 11.19 55.49 0.62 -24.08 16 20 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.15 3.21 4.64 -3.71 -0.02 3.19 16 25 C 0.07 1.23 3.36 -26.61 -0.09 1.14 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 O -0.57 -9.85 13.21 -35.23 -0.47 -10.32 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.49 6.49 -51.93 -0.34 1.15 16 33 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.16 1.97 7.74 -52.48 -0.41 1.57 16 35 H 0.40 7.16 6.04 -40.82 -0.25 6.91 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 39 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 42 H 0.02 0.53 6.64 -51.93 -0.34 0.19 16 43 H 0.38 5.15 9.08 45.56 0.41 5.56 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -30.60 350.16 -7.06 -37.66 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.37 Total: 12.79 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.50 Total: 2.41 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.12 Total: -50.93 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.31 Total: -22.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.60 -7.06 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090232252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.979 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds