Wall clock time and date at job start Fri Apr 10 2020 17:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47295 * 2 1 4 4 O 1.33656 * 125.80123 * 270.13884 * 3 2 1 5 5 C 1.34214 * 110.91164 * 180.26470 * 4 3 2 6 6 C 1.34179 * 109.12056 * 359.76725 * 5 4 3 7 7 C 1.36419 * 125.80656 * 89.99925 * 3 2 1 8 8 C 1.47375 * 127.18640 * 0.02562 * 7 3 2 9 9 O 1.21613 * 120.00695 * 359.70267 * 8 7 3 10 10 N 1.34777 * 119.99932 * 179.70977 * 8 7 3 11 11 C 1.46496 * 120.00299 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46080 * 35.02914 * 11 10 8 13 13 C 1.53040 * 109.45014 * 275.05837 * 11 10 8 14 14 C 1.53188 * 109.31207 * 301.35075 * 13 11 10 15 15 N 1.46931 * 108.77610 * 305.36319 * 14 13 11 16 16 C 1.36931 * 120.62988 * 233.58339 * 15 14 13 17 17 H 1.08002 * 120.00177 * 27.69097 * 16 15 14 18 18 C 1.38811 * 120.00200 * 207.68253 * 16 15 14 19 19 N 1.31625 * 119.99867 * 17.37448 * 18 16 15 20 20 Si 1.86802 * 120.00239 * 197.36751 * 18 16 15 21 21 H 1.48498 * 109.46798 * 60.00884 * 20 18 16 22 22 H 1.48505 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47420 * 300.00250 * 20 18 16 24 24 C 1.46924 * 118.73662 * 53.61218 * 15 14 13 25 25 C 1.53046 * 109.46107 * 154.99549 * 11 10 8 26 26 H 1.08994 * 109.49912 * 178.62559 * 25 11 10 27 27 O 1.42903 * 109.49742 * 298.69114 * 25 11 10 28 28 H 1.08997 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46950 * 299.99823 * 1 2 3 30 30 H 1.09000 * 109.47104 * 59.99954 * 1 2 3 31 31 H 1.09000 * 109.47080 * 239.99636 * 2 1 3 32 32 H 1.09004 * 109.47251 * 119.99566 * 2 1 3 33 33 H 1.08000 * 125.44149 * 179.76385 * 5 4 3 34 34 H 1.08005 * 127.01885 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00074 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.49461 * 61.30166 * 13 11 10 37 37 H 1.08998 * 109.49707 * 181.40285 * 13 11 10 38 38 H 1.09001 * 109.58622 * 65.15104 * 14 13 11 39 39 H 1.09005 * 109.58929 * 185.57566 * 14 13 11 40 40 H 0.96995 * 120.00276 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58587 * 186.60371 * 24 15 14 42 42 H 1.08998 * 109.58806 * 66.17685 * 24 15 14 43 43 H 0.96703 * 113.99300 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2905 2.1588 -1.0840 5 6 2.7291 3.3794 -0.7392 6 6 2.7641 3.4721 0.5990 7 6 2.2984 2.1732 1.1064 8 6 2.1551 1.7667 2.5157 9 8 1.7554 0.6511 2.7892 10 7 2.4670 2.6312 3.5014 11 6 2.3241 2.2273 4.9024 12 1 2.5717 1.1706 5.0027 13 6 0.8804 2.4580 5.3545 14 6 0.5251 3.9379 5.1797 15 7 1.5185 4.7505 5.8949 16 6 1.1240 5.6827 6.8170 17 1 0.1970 5.5511 7.3554 18 6 1.9154 6.7969 7.0599 19 7 2.8452 7.1448 6.1956 20 14 1.6610 7.8027 8.6134 21 1 1.8804 6.9407 9.8025 22 1 2.6251 8.9320 8.6354 23 1 0.2750 8.3352 8.6369 24 6 2.9433 4.5442 5.6014 25 6 3.2716 3.0575 5.7715 26 1 3.1482 2.7746 6.8169 27 8 4.6215 2.8180 5.3687 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0093 4.1621 -1.4286 34 1 3.0719 4.3263 1.1838 35 1 2.7861 3.5209 3.2833 36 1 0.2083 1.8487 4.7505 37 1 0.7792 2.1812 6.4039 38 1 0.5378 4.1940 4.1203 39 1 -0.4664 4.1268 5.5915 40 1 3.3980 7.9236 6.3651 41 1 3.5475 5.1331 6.2914 42 1 3.1532 4.8498 4.5764 43 1 5.2777 3.3132 5.8780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090232252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:30 Heat of formation + Delta-G solvation = -76.739370 kcal Electronic energy + Delta-G solvation = -26535.401542 eV Core-core repulsion = 22774.809809 eV Total energy + Delta-G solvation = -3760.591732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.55039 -41.07181 -39.23955 -36.87201 -35.74973 -34.91018 -34.11608 -33.29115 -31.32310 -30.50584 -29.68932 -27.28034 -25.33557 -24.13619 -23.80808 -23.46331 -22.21408 -20.81625 -20.22835 -18.99681 -18.72131 -18.09584 -17.28710 -17.11647 -16.71916 -16.68731 -16.01020 -15.82172 -15.62868 -15.41100 -15.25260 -14.94579 -14.68735 -14.34837 -13.98791 -13.86967 -13.57813 -13.51393 -13.26981 -13.24828 -12.87471 -12.69829 -12.62792 -12.46284 -12.20733 -12.00436 -11.92965 -11.83512 -11.28029 -11.03300 -10.88104 -10.83356 -10.57845 -10.02476 -9.53823 -8.71886 -7.90111 -5.35679 0.34914 1.12194 1.48989 1.50714 1.57164 1.82853 2.30055 2.35701 2.50154 3.13119 3.26630 3.56635 3.64849 3.77489 3.89008 3.97011 4.13854 4.17186 4.25374 4.32483 4.35128 4.45055 4.46850 4.60682 4.69212 4.74368 4.90710 4.94593 4.97078 5.04186 5.06349 5.13226 5.14993 5.29983 5.31296 5.36257 5.56017 5.57434 5.64835 6.03926 6.34152 6.57471 6.81760 7.11733 7.23022 7.79269 8.31583 9.15510 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.003815 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.176526 B = 7337.247269 C = 7618.283816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.073 3.927 4 O -0.176 6.176 5 C -0.023 4.023 6 C -0.208 4.208 7 C -0.267 4.267 8 C 0.585 3.415 9 O -0.574 6.574 10 N -0.696 5.696 11 C 0.169 3.831 12 H 0.077 0.923 13 C -0.131 4.131 14 C 0.147 3.853 15 N -0.601 5.601 16 C -0.268 4.268 17 H 0.067 0.933 18 C -0.041 4.041 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.159 3.841 25 C 0.083 3.917 26 H 0.065 0.935 27 O -0.574 6.574 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.251 0.749 34 H 0.159 0.841 35 H 0.403 0.597 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.013 0.987 39 H 0.057 0.943 40 H 0.252 0.748 41 H 0.066 0.934 42 H 0.009 0.991 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -9.899 -11.987 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C 0.020 3.980 4 O -0.072 6.072 5 C -0.088 4.088 6 C -0.227 4.227 7 C -0.271 4.271 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.346 5.346 11 C 0.064 3.936 12 H 0.095 0.905 13 C -0.171 4.171 14 C 0.022 3.978 15 N -0.326 5.326 16 C -0.398 4.398 17 H 0.085 0.915 18 C -0.237 4.237 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.205 1.205 24 C 0.032 3.968 25 C 0.022 3.978 26 H 0.082 0.918 27 O -0.381 6.381 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.239 0.761 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.067 -11.010 -12.474 16.638 hybrid contribution 0.542 2.018 1.469 2.554 sum 0.476 -8.993 -11.005 14.220 Atomic orbital electron populations 1.21649 0.92754 1.03497 1.01604 1.20419 0.97426 0.85487 1.05318 1.23127 0.96868 0.95057 0.82950 1.83774 1.65138 1.23785 1.34488 1.24600 1.01863 0.86063 0.96321 1.23089 1.06307 0.97532 0.95746 1.21271 1.15072 0.97404 0.93398 1.17479 0.76497 0.84030 0.84565 1.90676 1.48983 1.21375 1.84618 1.45760 1.66246 1.17151 1.05470 1.20743 0.94540 0.98348 0.80004 0.90538 1.22246 0.95121 0.97854 1.01838 1.20955 0.92843 0.89745 0.94281 1.44150 1.00800 1.41787 1.45821 1.19464 1.07404 0.99399 1.13551 0.91500 1.25701 0.99786 0.97423 1.00812 1.70139 1.25049 1.27083 1.35138 0.85393 0.77251 0.77853 0.80224 1.20427 1.22012 1.20467 1.21188 0.85890 0.91622 0.98052 1.22615 0.81768 0.96501 0.96877 0.91755 1.86406 1.15959 1.71183 1.64517 0.89566 0.94297 0.91736 0.87581 0.88558 0.73356 0.82359 0.76116 0.91033 0.90389 0.96893 0.92471 0.93930 0.91533 0.97345 0.75954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.89 71.98 0.71 -2.07 16 2 C -0.05 -1.09 5.94 29.84 0.18 -0.92 16 3 C 0.07 1.94 6.63 25.26 0.17 2.11 16 4 O -0.18 -4.06 10.52 4.44 0.05 -4.02 16 5 C -0.02 -0.47 12.03 66.89 0.80 0.34 16 6 C -0.21 -5.37 10.60 23.65 0.25 -5.12 16 7 C -0.27 -8.19 6.31 -18.99 -0.12 -8.31 16 8 C 0.58 20.73 7.78 86.65 0.67 21.40 16 9 O -0.57 -22.06 14.51 -4.07 -0.06 -22.12 16 10 N -0.70 -24.72 4.15 -445.72 -1.85 -26.57 16 11 C 0.17 6.10 2.47 45.02 0.11 6.21 16 12 H 0.08 2.85 7.58 -2.39 -0.02 2.83 16 13 C -0.13 -4.66 5.77 30.67 0.18 -4.48 16 14 C 0.15 6.06 6.26 86.36 0.54 6.60 16 15 N -0.60 -28.53 2.99 -699.09 -2.09 -30.62 16 16 C -0.27 -14.06 9.59 84.03 0.81 -13.26 16 17 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 18 C -0.04 -2.17 4.91 84.86 0.42 -1.75 16 19 N -0.93 -51.44 11.19 21.65 0.24 -51.20 16 20 Si 0.96 42.82 29.59 68.60 2.03 44.85 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 24 C 0.16 7.06 4.64 86.36 0.40 7.46 16 25 C 0.08 3.08 3.36 30.67 0.10 3.18 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 O -0.57 -19.38 13.21 -148.98 -1.97 -21.35 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 2.50 6.49 -2.38 -0.02 2.48 16 33 H 0.25 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.16 3.96 7.74 -2.91 -0.02 3.94 16 35 H 0.40 14.53 6.04 -92.70 -0.56 13.97 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.01 0.56 7.74 -2.39 -0.02 0.54 16 39 H 0.06 2.31 7.93 -2.38 -0.02 2.29 16 40 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 41 H 0.07 3.31 6.04 -2.39 -0.01 3.30 16 42 H 0.01 0.40 6.64 -2.39 -0.02 0.39 16 43 H 0.39 10.43 9.08 -74.06 -0.67 9.76 16 Total: -1.00 -65.40 350.16 1.38 -64.02 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.19 Total: 35.62 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 5.22 Total: 11.38 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.70 Total: -108.39 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -1.98 Total: -47.49 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -65.40 1.38 -64.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090232252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.715 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds