Wall clock time and date at job start Fri Apr 10 2020 17:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47263 * 2 1 4 4 O 1.33650 * 125.80220 * 270.14455 * 3 2 1 5 5 C 1.34220 * 110.90655 * 180.26546 * 4 3 2 6 6 C 1.34179 * 109.12660 * 359.75694 * 5 4 3 7 7 C 1.36417 * 125.80138 * 89.99556 * 3 2 1 8 8 C 1.47380 * 127.19066 * 0.02562 * 7 3 2 9 9 O 1.21618 * 120.00056 * 359.71196 * 8 7 3 10 10 N 1.34776 * 120.00027 * 179.70489 * 8 7 3 11 11 C 1.46500 * 119.99987 * 179.72668 * 10 8 7 12 12 H 1.08997 * 109.45955 * 325.30116 * 11 10 8 13 13 C 1.53041 * 109.46221 * 85.27599 * 11 10 8 14 14 C 1.53194 * 109.31208 * 58.65060 * 13 11 10 15 15 N 1.46931 * 108.77309 * 54.63897 * 14 13 11 16 16 C 1.36935 * 120.63414 * 126.36616 * 15 14 13 17 17 H 1.07994 * 120.00315 * 207.69254 * 16 15 14 18 18 C 1.38818 * 119.99794 * 27.68679 * 16 15 14 19 19 N 1.31625 * 119.99652 * 17.36598 * 18 16 15 20 20 Si 1.86799 * 120.00153 * 197.36062 * 18 16 15 21 21 H 1.48498 * 109.46837 * 60.00206 * 20 18 16 22 22 H 1.48499 * 109.47142 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47336 * 300.00402 * 20 18 16 24 24 C 1.46924 * 118.73606 * 306.39047 * 15 14 13 25 25 C 1.53041 * 109.46155 * 205.34367 * 11 10 8 26 26 H 1.08996 * 109.49801 * 181.39131 * 25 11 10 27 27 O 1.42897 * 109.49678 * 61.29328 * 25 11 10 28 28 H 1.09008 * 109.47253 * 59.99980 * 1 2 3 29 29 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47414 * 300.00332 * 1 2 3 31 31 H 1.09001 * 109.47482 * 240.00411 * 2 1 3 32 32 H 1.08996 * 109.46934 * 120.00123 * 2 1 3 33 33 H 1.08000 * 125.43676 * 179.75991 * 5 4 3 34 34 H 1.08000 * 127.02418 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99682 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.50204 * 178.60835 * 13 11 10 37 37 H 1.09007 * 109.49449 * 298.70654 * 13 11 10 38 38 H 1.09000 * 109.58912 * 174.42067 * 14 13 11 39 39 H 1.08991 * 109.59086 * 294.70875 * 14 13 11 40 40 H 0.96996 * 119.99366 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58666 * 173.39616 * 24 15 14 42 42 H 1.08995 * 109.58662 * 293.81926 * 24 15 14 43 43 H 0.96702 * 114.00147 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2904 2.1589 -1.0840 5 6 2.7291 3.3795 -0.7390 6 6 2.7639 3.4722 0.5992 7 6 2.2982 2.1732 1.1064 8 6 2.1549 1.7666 2.5158 9 8 1.7554 0.6510 2.7892 10 7 2.4668 2.6311 3.5016 11 6 2.3187 2.2290 4.9025 12 1 1.4568 1.5691 5.0017 13 6 3.5803 1.4919 5.3576 14 6 4.7940 2.4106 5.1845 15 7 4.5399 3.6693 5.8985 16 6 5.4339 4.1399 6.8229 17 1 5.0921 4.7623 7.6366 18 6 6.7796 3.8169 6.7141 19 7 7.2573 3.3631 5.5746 20 14 7.9123 4.0264 8.1846 21 1 7.4298 3.1803 9.3055 22 1 9.2896 3.6156 7.8110 23 1 7.9181 5.4503 8.6061 24 6 3.3081 4.4133 5.6022 25 6 2.1111 3.4722 5.7706 26 1 2.0254 3.1758 6.8160 27 8 0.9163 4.1430 5.3650 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8899 33 1 3.0092 4.1622 -1.4284 34 1 3.0710 4.3266 1.1841 35 1 2.7852 3.5210 3.2835 36 1 3.4809 1.2142 6.4069 37 1 3.7147 0.5941 4.7542 38 1 5.6794 1.9281 5.5984 39 1 4.9502 2.6140 4.1252 40 1 8.1977 3.1377 5.4985 41 1 3.2131 5.2523 6.2917 42 1 3.3416 4.7821 4.5771 43 1 0.7220 4.9423 5.8734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090232253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:33 Heat of formation + Delta-G solvation = -54.658091 kcal Electronic energy + Delta-G solvation = -26503.935848 eV Core-core repulsion = 22744.301631 eV Total energy + Delta-G solvation = -3759.634216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52012 -39.61732 -37.77800 -35.43645 -34.28031 -33.76228 -32.79827 -31.55333 -30.10825 -28.84898 -28.45504 -25.45416 -24.13836 -22.95660 -22.27276 -21.89624 -21.01269 -19.64470 -18.66152 -17.86246 -17.07725 -16.53616 -16.23541 -15.79702 -15.33809 -14.93186 -14.69593 -14.41101 -14.34068 -14.15314 -13.76711 -13.52585 -13.24166 -12.92764 -12.75184 -12.59009 -12.29893 -12.25792 -11.96800 -11.67487 -11.57676 -11.18203 -11.01842 -10.88476 -10.65701 -10.41871 -10.20547 -9.95713 -9.83243 -9.73449 -9.54911 -9.42540 -8.66427 -8.53191 -8.41830 -6.78710 -5.87699 -3.31902 1.48630 2.13267 2.82738 3.33146 3.39899 3.40476 3.62447 3.68314 4.36214 4.49558 4.52264 4.88807 4.98387 5.09167 5.22338 5.27398 5.32480 5.39496 5.45556 5.53827 5.59325 5.70146 5.70971 5.82549 5.97118 5.98426 6.07119 6.08545 6.19469 6.28551 6.34519 6.44863 6.55943 6.64552 6.71083 6.98711 7.07473 7.27869 7.59406 7.70413 7.92025 7.96605 8.34718 8.62671 9.10399 9.72810 10.28291 11.20309 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003931 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.589764 B = 7120.766056 C = 7583.332814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.072 3.928 4 O -0.178 6.178 5 C -0.045 4.045 6 C -0.183 4.183 7 C -0.234 4.234 8 C 0.589 3.411 9 O -0.552 6.552 10 N -0.696 5.696 11 C 0.167 3.833 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.172 3.828 15 N -0.586 5.586 16 C -0.261 4.261 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.119 3.881 25 C 0.075 3.925 26 H 0.067 0.933 27 O -0.570 6.570 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.206 0.794 34 H 0.156 0.844 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.022 0.978 40 H 0.256 0.744 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -1.160 -9.880 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C 0.019 3.981 4 O -0.075 6.075 5 C -0.110 4.110 6 C -0.202 4.202 7 C -0.238 4.238 8 C 0.377 3.623 9 O -0.433 6.433 10 N -0.346 5.346 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C 0.046 3.954 15 N -0.310 5.310 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.009 4.009 25 C 0.014 3.986 26 H 0.084 0.916 27 O -0.375 6.375 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.223 0.777 34 H 0.174 0.826 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.384 -2.557 -10.417 15.642 hybrid contribution 1.082 1.420 1.174 2.137 sum -10.303 -1.136 -9.243 13.888 Atomic orbital electron populations 1.21678 0.93551 1.02409 1.02308 1.20358 0.96821 0.86521 1.04972 1.22796 0.97841 0.94357 0.83120 1.83735 1.65395 1.23276 1.35052 1.23799 1.04599 0.86280 0.96367 1.22933 1.04695 0.98010 0.94555 1.21245 1.12730 0.95675 0.94158 1.17128 0.77009 0.84519 0.83662 1.90705 1.48076 1.20453 1.84073 1.45717 1.66122 1.17090 1.05663 1.20827 0.98784 0.94738 0.79403 0.90267 1.22590 0.96545 0.99294 1.00887 1.20790 0.94485 0.85021 0.95082 1.43996 1.19388 1.20849 1.46808 1.19119 0.87276 1.30341 1.02312 0.91621 1.25047 0.96695 1.01005 0.96498 1.70029 1.13593 1.47903 1.22693 0.86352 0.79810 0.78042 0.82432 1.20913 1.21570 1.20858 1.21531 0.87361 0.93723 0.98257 1.22754 0.85138 0.93404 0.97271 0.91558 1.86492 1.43661 1.43580 1.63735 0.92854 0.91536 0.91777 0.90300 0.86741 0.77706 0.82589 0.76257 0.91492 0.91802 0.89259 0.96024 0.93436 0.92288 0.96108 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 37.15 0.37 -1.17 16 2 C -0.05 -0.60 5.94 -27.89 -0.17 -0.77 16 3 C 0.07 1.02 6.63 -34.96 -0.23 0.78 16 4 O -0.18 -2.31 10.52 7.64 0.08 -2.23 16 5 C -0.04 -0.51 12.03 29.30 0.35 -0.15 16 6 C -0.18 -2.44 10.60 -37.45 -0.40 -2.84 16 7 C -0.23 -3.68 6.31 -103.27 -0.65 -4.33 16 8 C 0.59 10.58 7.78 -12.54 -0.10 10.48 16 9 O -0.55 -10.83 14.51 5.26 0.08 -10.75 16 10 N -0.70 -12.28 4.15 -54.85 -0.23 -12.51 16 11 C 0.17 3.05 2.47 -67.89 -0.17 2.88 16 12 H 0.08 1.50 7.57 -51.93 -0.39 1.10 16 13 C -0.15 -3.03 5.77 -26.61 -0.15 -3.18 16 14 C 0.17 4.00 5.05 -3.71 -0.02 3.98 16 15 N -0.59 -13.87 2.99 -172.32 -0.52 -14.39 16 16 C -0.26 -6.85 9.59 -15.06 -0.14 -7.00 16 17 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 18 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 19 N -0.90 -25.35 11.19 55.49 0.62 -24.73 16 20 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 2.29 5.84 -3.71 -0.02 2.27 16 25 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 O -0.57 -8.62 13.21 -35.23 -0.47 -9.09 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.57 6.49 -51.93 -0.34 1.24 16 33 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.16 1.89 7.74 -52.49 -0.41 1.48 16 35 H 0.40 6.89 6.04 -40.82 -0.25 6.65 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.09 2.36 6.03 -51.93 -0.31 2.05 16 39 H 0.02 0.53 7.74 -51.93 -0.40 0.13 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 42 H 0.02 0.41 6.64 -51.93 -0.34 0.06 16 43 H 0.37 4.02 9.08 45.56 0.41 4.43 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -31.48 350.17 -7.06 -38.54 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.37 Total: 11.57 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.50 Total: 2.26 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.12 Total: -51.62 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.31 Total: -22.07 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.48 -7.06 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090232253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.115 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds