Wall clock time and date at job start Fri Apr 10 2020 17:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47263 * 2 1 4 4 O 1.33650 * 125.80220 * 270.14455 * 3 2 1 5 5 C 1.34220 * 110.90655 * 180.26546 * 4 3 2 6 6 C 1.34179 * 109.12660 * 359.75694 * 5 4 3 7 7 C 1.36417 * 125.80138 * 89.99556 * 3 2 1 8 8 C 1.47380 * 127.19066 * 0.02562 * 7 3 2 9 9 O 1.21618 * 120.00056 * 359.71196 * 8 7 3 10 10 N 1.34776 * 120.00027 * 179.70489 * 8 7 3 11 11 C 1.46500 * 119.99987 * 179.72668 * 10 8 7 12 12 H 1.08997 * 109.45955 * 325.30116 * 11 10 8 13 13 C 1.53041 * 109.46221 * 85.27599 * 11 10 8 14 14 C 1.53194 * 109.31208 * 58.65060 * 13 11 10 15 15 N 1.46931 * 108.77309 * 54.63897 * 14 13 11 16 16 C 1.36935 * 120.63414 * 126.36616 * 15 14 13 17 17 H 1.07994 * 120.00315 * 207.69254 * 16 15 14 18 18 C 1.38818 * 119.99794 * 27.68679 * 16 15 14 19 19 N 1.31625 * 119.99652 * 17.36598 * 18 16 15 20 20 Si 1.86799 * 120.00153 * 197.36062 * 18 16 15 21 21 H 1.48498 * 109.46837 * 60.00206 * 20 18 16 22 22 H 1.48499 * 109.47142 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47336 * 300.00402 * 20 18 16 24 24 C 1.46924 * 118.73606 * 306.39047 * 15 14 13 25 25 C 1.53041 * 109.46155 * 205.34367 * 11 10 8 26 26 H 1.08996 * 109.49801 * 181.39131 * 25 11 10 27 27 O 1.42897 * 109.49678 * 61.29328 * 25 11 10 28 28 H 1.09008 * 109.47253 * 59.99980 * 1 2 3 29 29 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47414 * 300.00332 * 1 2 3 31 31 H 1.09001 * 109.47482 * 240.00411 * 2 1 3 32 32 H 1.08996 * 109.46934 * 120.00123 * 2 1 3 33 33 H 1.08000 * 125.43676 * 179.75991 * 5 4 3 34 34 H 1.08000 * 127.02418 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99682 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.50204 * 178.60835 * 13 11 10 37 37 H 1.09007 * 109.49449 * 298.70654 * 13 11 10 38 38 H 1.09000 * 109.58912 * 174.42067 * 14 13 11 39 39 H 1.08991 * 109.59086 * 294.70875 * 14 13 11 40 40 H 0.96996 * 119.99366 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58666 * 173.39616 * 24 15 14 42 42 H 1.08995 * 109.58662 * 293.81926 * 24 15 14 43 43 H 0.96702 * 114.00147 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2904 2.1589 -1.0840 5 6 2.7291 3.3795 -0.7390 6 6 2.7639 3.4722 0.5992 7 6 2.2982 2.1732 1.1064 8 6 2.1549 1.7666 2.5158 9 8 1.7554 0.6510 2.7892 10 7 2.4668 2.6311 3.5016 11 6 2.3187 2.2290 4.9025 12 1 1.4568 1.5691 5.0017 13 6 3.5803 1.4919 5.3576 14 6 4.7940 2.4106 5.1845 15 7 4.5399 3.6693 5.8985 16 6 5.4339 4.1399 6.8229 17 1 5.0921 4.7623 7.6366 18 6 6.7796 3.8169 6.7141 19 7 7.2573 3.3631 5.5746 20 14 7.9123 4.0264 8.1846 21 1 7.4298 3.1803 9.3055 22 1 9.2896 3.6156 7.8110 23 1 7.9181 5.4503 8.6061 24 6 3.3081 4.4133 5.6022 25 6 2.1111 3.4722 5.7706 26 1 2.0254 3.1758 6.8160 27 8 0.9163 4.1430 5.3650 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8899 33 1 3.0092 4.1622 -1.4284 34 1 3.0710 4.3266 1.1841 35 1 2.7852 3.5210 3.2835 36 1 3.4809 1.2142 6.4069 37 1 3.7147 0.5941 4.7542 38 1 5.6794 1.9281 5.5984 39 1 4.9502 2.6140 4.1252 40 1 8.1977 3.1377 5.4985 41 1 3.2131 5.2523 6.2917 42 1 3.3416 4.7821 4.5771 43 1 0.7220 4.9423 5.8734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090232253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:33 Heat of formation + Delta-G solvation = -76.939087 kcal Electronic energy + Delta-G solvation = -26504.902024 eV Core-core repulsion = 22744.301631 eV Total energy + Delta-G solvation = -3760.600393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.54839 -41.07670 -39.24792 -36.95562 -35.69085 -34.90838 -34.02382 -33.24274 -31.75180 -30.24824 -29.66456 -27.28087 -25.33311 -24.10973 -23.79321 -23.55844 -22.22170 -20.83142 -20.25751 -19.00468 -18.73951 -17.99612 -17.31560 -17.03288 -16.79871 -16.71994 -15.99220 -15.85167 -15.72195 -15.41398 -15.25562 -14.87828 -14.73294 -14.35538 -13.98309 -13.84153 -13.59565 -13.49866 -13.28837 -13.23286 -13.01307 -12.71038 -12.49300 -12.35514 -12.23200 -12.00633 -11.94845 -11.84374 -11.30631 -11.06165 -10.92927 -10.82901 -10.50988 -10.03167 -9.53824 -8.72262 -7.89495 -5.35775 0.34949 1.12847 1.47961 1.50965 1.56937 1.82758 2.29423 2.36714 2.49690 3.14392 3.26846 3.56583 3.64614 3.77466 3.88644 3.93009 4.05460 4.16095 4.23620 4.31596 4.36893 4.46152 4.51869 4.60362 4.66690 4.74123 4.86617 4.93918 4.96053 5.02994 5.04046 5.10715 5.13351 5.29656 5.36224 5.39906 5.54332 5.62505 5.68964 6.03848 6.34440 6.57662 6.88021 7.11161 7.23829 7.80088 8.31710 9.16614 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003931 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.589764 B = 7120.766056 C = 7583.332814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C 0.072 3.928 4 O -0.177 6.177 5 C -0.024 4.024 6 C -0.206 4.206 7 C -0.267 4.267 8 C 0.583 3.417 9 O -0.576 6.576 10 N -0.694 5.694 11 C 0.169 3.831 12 H 0.076 0.924 13 C -0.139 4.139 14 C 0.186 3.814 15 N -0.600 5.600 16 C -0.267 4.267 17 H 0.073 0.927 18 C -0.045 4.045 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.119 3.881 25 C 0.095 3.905 26 H 0.073 0.927 27 O -0.571 6.571 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.163 0.837 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.000 1.000 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -0.200 -10.486 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C 0.018 3.982 4 O -0.072 6.072 5 C -0.089 4.089 6 C -0.225 4.225 7 C -0.272 4.272 8 C 0.373 3.627 9 O -0.459 6.459 10 N -0.344 5.344 11 C 0.064 3.936 12 H 0.094 0.906 13 C -0.179 4.179 14 C 0.060 3.940 15 N -0.325 5.325 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.241 4.241 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.199 1.199 24 C -0.007 4.007 25 C 0.034 3.966 26 H 0.090 0.910 27 O -0.378 6.378 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.268 0.732 34 H 0.181 0.819 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.564 -1.557 -11.011 16.779 hybrid contribution 1.381 1.173 1.299 2.229 sum -11.183 -0.385 -9.712 14.817 Atomic orbital electron populations 1.21635 0.92505 1.03484 1.01663 1.20417 0.97645 0.85602 1.05161 1.23103 0.97035 0.95008 0.83035 1.83771 1.65168 1.23848 1.34451 1.24631 1.01857 0.86057 0.96388 1.23099 1.06145 0.97551 0.95709 1.21286 1.14983 0.97586 0.93321 1.17518 0.76371 0.84162 0.84691 1.90678 1.49197 1.21340 1.84655 1.45682 1.66164 1.17165 1.05426 1.20726 0.97433 0.95338 0.80109 0.90579 1.22387 0.95972 0.98428 1.01160 1.20457 0.94558 0.85599 0.93372 1.44154 1.20343 1.21405 1.46597 1.19497 0.87792 1.29571 1.02845 0.90898 1.25773 0.98200 1.01517 0.98642 1.70185 1.13371 1.49625 1.24548 0.85368 0.77478 0.78242 0.79502 1.20467 1.22387 1.19909 1.21667 0.86316 0.94221 0.98532 1.22351 0.84877 0.92229 0.97114 0.90953 1.86465 1.42166 1.44835 1.64350 0.91528 0.89656 0.94238 0.87719 0.88856 0.73239 0.81943 0.76038 0.90978 0.92425 0.92770 0.98186 0.94144 0.91099 0.95997 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.89 71.98 0.71 -2.08 16 2 C -0.05 -1.21 5.94 29.85 0.18 -1.03 16 3 C 0.07 1.97 6.63 25.26 0.17 2.14 16 4 O -0.18 -4.20 10.52 4.44 0.05 -4.15 16 5 C -0.02 -0.49 12.03 66.89 0.80 0.32 16 6 C -0.21 -5.30 10.60 23.65 0.25 -5.05 16 7 C -0.27 -8.42 6.31 -18.99 -0.12 -8.54 16 8 C 0.58 21.35 7.78 86.65 0.67 22.03 16 9 O -0.58 -23.21 14.51 -4.09 -0.06 -23.27 16 10 N -0.69 -24.68 4.15 -445.71 -1.85 -26.53 16 11 C 0.17 6.12 2.47 45.02 0.11 6.23 16 12 H 0.08 2.85 7.57 -2.39 -0.02 2.83 16 13 C -0.14 -5.60 5.77 30.67 0.18 -5.42 16 14 C 0.19 8.91 5.05 86.36 0.44 9.35 16 15 N -0.60 -28.42 2.99 -699.09 -2.09 -30.52 16 16 C -0.27 -13.95 9.59 84.04 0.81 -13.14 16 17 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 18 C -0.05 -2.45 4.91 84.86 0.42 -2.03 16 19 N -0.93 -53.91 11.19 21.65 0.24 -53.67 16 20 Si 0.97 43.53 29.59 68.60 2.03 45.56 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.12 4.45 5.84 86.36 0.50 4.96 16 25 C 0.10 3.10 3.36 30.67 0.10 3.21 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 O -0.57 -15.90 13.21 -148.98 -1.97 -17.87 16 28 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 2.62 6.49 -2.39 -0.02 2.60 16 33 H 0.25 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.16 3.82 7.74 -2.91 -0.02 3.80 16 35 H 0.40 13.89 6.04 -92.71 -0.56 13.33 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.05 2.98 6.03 -2.39 -0.01 2.96 16 39 H 0.00 0.00 7.74 -2.39 -0.02 -0.02 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.07 2.48 7.93 -2.38 -0.02 2.46 16 42 H 0.02 0.84 6.64 -2.39 -0.02 0.82 16 43 H 0.40 7.28 9.08 -74.06 -0.67 6.61 16 Total: -1.00 -68.90 350.17 1.38 -67.52 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.19 Total: 32.00 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.22 Total: 10.92 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -3.70 Total: -110.72 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.98 Total: -45.29 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.90 1.38 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090232253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.416 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds