Wall clock time and date at job start Fri Apr 10 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47331 * 2 1 4 4 O 1.33658 * 125.79951 * 270.14167 * 3 2 1 5 5 C 1.34211 * 110.90767 * 180.26737 * 4 3 2 6 6 C 1.34182 * 109.12135 * 359.76025 * 5 4 3 7 7 C 1.36413 * 125.80474 * 89.99795 * 3 2 1 8 8 C 1.47380 * 127.18886 * 0.02562 * 7 3 2 9 9 O 1.21613 * 120.00138 * 359.70153 * 8 7 3 10 10 N 1.34780 * 119.99799 * 179.71072 * 8 7 3 11 11 C 1.46495 * 119.99790 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46304 * 325.01814 * 11 10 8 13 13 C 1.53041 * 109.46714 * 84.99289 * 11 10 8 14 14 C 1.53183 * 109.31534 * 181.36956 * 13 11 10 15 15 N 1.46927 * 108.78012 * 305.36562 * 14 13 11 16 16 C 1.36933 * 120.63353 * 233.59018 * 15 14 13 17 17 H 1.08000 * 120.00191 * 151.84471 * 16 15 14 18 18 C 1.38816 * 120.00216 * 331.84389 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07025 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07047 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46927 * 118.73625 * 53.60636 * 15 14 13 25 25 C 1.53188 * 108.89428 * 306.32307 * 24 15 14 26 26 H 1.09002 * 109.50218 * 294.75539 * 25 24 15 27 27 O 1.42905 * 109.50043 * 174.65485 * 25 24 15 28 28 H 1.08995 * 109.47087 * 59.99778 * 1 2 3 29 29 H 1.09001 * 109.47492 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47236 * 300.00154 * 1 2 3 31 31 H 1.09001 * 109.46849 * 239.99537 * 2 1 3 32 32 H 1.08997 * 109.47014 * 119.99675 * 2 1 3 33 33 H 1.07998 * 125.43916 * 179.76275 * 5 4 3 34 34 H 1.08006 * 127.01696 * 180.02562 * 6 5 4 35 35 H 0.96993 * 120.00102 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.49362 * 61.41712 * 13 11 10 37 37 H 1.08995 * 109.49667 * 301.32731 * 13 11 10 38 38 H 1.09002 * 109.58545 * 185.57962 * 14 13 11 39 39 H 1.09004 * 109.70475 * 65.22489 * 14 13 11 40 40 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.58516 * 66.18154 * 24 15 14 42 42 H 1.09000 * 109.58539 * 186.46214 * 24 15 14 43 43 H 0.96705 * 113.99517 * 60.00305 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2905 2.1588 -1.0841 5 6 2.7292 3.3794 -0.7392 6 6 2.7641 3.4720 0.5990 7 6 2.2984 2.1732 1.1063 8 6 2.1551 1.7667 2.5157 9 8 1.7554 0.6511 2.7892 10 7 2.4670 2.6313 3.5015 11 6 2.3251 2.2270 4.9024 12 1 1.4632 1.5675 5.0046 13 6 3.5883 1.4880 5.3504 14 6 3.4224 1.0371 6.8049 15 7 3.0840 2.2067 7.6271 16 6 3.8202 2.5138 8.7401 17 1 3.8948 3.5387 9.0725 18 6 4.4707 1.5077 9.4414 19 7 4.1279 0.2503 9.2579 20 14 5.8324 1.9385 10.6452 21 1 5.2499 2.1598 11.9931 22 1 6.8108 0.8229 10.7058 23 1 6.5194 3.1753 10.1937 24 6 1.9403 3.0405 7.2326 25 6 2.1209 3.4722 5.7739 26 1 2.9935 4.1203 5.6916 27 8 0.9580 4.1792 5.3382 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0093 4.1621 -1.4286 34 1 3.0712 4.3265 1.1839 35 1 2.7860 3.5209 3.2834 36 1 4.4469 2.1549 5.2718 37 1 3.7446 0.6165 4.7148 38 1 4.3549 0.5983 7.1600 39 1 2.6227 0.2994 6.8721 40 1 4.5821 -0.4527 9.7482 41 1 1.0186 2.4674 7.3326 42 1 1.8934 3.9224 7.8715 43 1 0.7681 4.9772 5.8502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090232254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:37 Heat of formation + Delta-G solvation = -81.176280 kcal Electronic energy + Delta-G solvation = -25979.905311 eV Core-core repulsion = 22219.121180 eV Total energy + Delta-G solvation = -3760.784131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.54538 -40.92977 -39.32119 -36.98817 -35.86000 -34.92926 -34.09928 -33.41627 -31.66919 -30.24885 -29.68045 -27.19855 -25.25874 -24.16980 -23.84371 -23.32137 -21.80108 -21.41709 -20.53371 -19.05718 -18.64577 -18.02880 -17.32515 -17.24369 -16.93231 -16.67587 -15.88467 -15.73167 -15.68567 -15.36954 -15.27661 -14.93889 -14.69510 -14.41183 -13.96422 -13.86213 -13.61733 -13.56869 -13.28380 -13.26492 -12.98441 -12.71302 -12.52308 -12.37095 -12.12027 -12.09276 -11.96363 -11.88777 -11.39688 -11.12463 -10.92656 -10.82246 -10.56902 -10.04942 -9.53498 -8.76946 -7.90808 -5.38675 0.33829 1.15208 1.48149 1.50031 1.59638 1.81753 2.24012 2.34345 2.49090 3.10314 3.26796 3.57316 3.61603 3.76521 3.87503 3.91400 4.04833 4.15003 4.20934 4.29383 4.37349 4.44775 4.51695 4.58885 4.67387 4.75996 4.83595 4.93180 4.94298 5.01147 5.01854 5.10511 5.11761 5.27245 5.35513 5.39973 5.49832 5.59581 5.64883 6.05299 6.33384 6.58556 6.87480 7.08971 7.25059 7.77132 8.30307 9.16701 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.003236 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.264297 B = 8651.377563 C = 8906.746269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.070 3.930 4 O -0.179 6.179 5 C -0.027 4.027 6 C -0.199 4.199 7 C -0.265 4.265 8 C 0.581 3.419 9 O -0.579 6.579 10 N -0.697 5.697 11 C 0.172 3.828 12 H 0.056 0.944 13 C -0.128 4.128 14 C 0.181 3.819 15 N -0.603 5.603 16 C -0.268 4.268 17 H 0.077 0.923 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.265 1.265 24 C 0.118 3.882 25 C 0.103 3.897 26 H 0.074 0.926 27 O -0.571 6.571 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.178 0.822 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.063 0.937 39 H -0.008 1.008 40 H 0.251 0.749 41 H 0.011 0.989 42 H 0.076 0.924 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 9.262 -20.968 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C 0.016 3.984 4 O -0.074 6.074 5 C -0.091 4.091 6 C -0.218 4.218 7 C -0.270 4.270 8 C 0.370 3.630 9 O -0.461 6.461 10 N -0.347 5.347 11 C 0.067 3.933 12 H 0.074 0.926 13 C -0.168 4.168 14 C 0.055 3.945 15 N -0.328 5.328 16 C -0.397 4.397 17 H 0.095 0.905 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.190 1.190 24 C -0.009 4.009 25 C 0.042 3.958 26 H 0.091 0.909 27 O -0.378 6.378 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.195 0.805 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.010 0.990 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.095 0.905 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.221 7.814 -21.404 23.013 hybrid contribution 0.763 0.577 1.679 1.932 sum -2.458 8.391 -19.725 21.576 Atomic orbital electron populations 1.21641 0.92850 1.03368 1.01606 1.20394 0.97422 0.86146 1.05078 1.23025 0.97142 0.94897 0.83297 1.83780 1.65159 1.24081 1.34423 1.24719 1.01817 0.85904 0.96698 1.23156 1.05967 0.97245 0.95441 1.21229 1.15124 0.97950 0.92684 1.17642 0.76336 0.84117 0.84881 1.90737 1.48713 1.21984 1.84704 1.45625 1.66872 1.17262 1.04920 1.20706 0.97531 0.95322 0.79740 0.92612 1.22313 0.97163 0.99682 0.97648 1.20532 0.98770 0.88055 0.87184 1.44240 1.31356 1.29600 1.27575 1.19567 1.24236 0.92707 1.03223 0.90522 1.25901 1.03198 0.95379 1.00090 1.70208 1.42773 0.99954 1.45244 0.85224 0.78894 0.77309 0.78674 1.21113 1.22158 1.18968 1.21687 0.89632 0.95439 0.94141 1.22353 0.88277 0.92007 0.93183 0.90856 1.86461 1.46639 1.43682 1.61024 0.91333 0.89976 0.94471 0.87680 0.89087 0.73138 0.80492 0.75332 0.91284 0.92517 0.91902 0.99017 0.94013 0.97079 0.90522 0.75369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.89 71.98 0.71 -2.13 16 2 C -0.05 -1.20 5.94 29.85 0.18 -1.02 16 3 C 0.07 1.71 6.63 25.26 0.17 1.88 16 4 O -0.18 -3.57 10.52 4.45 0.05 -3.52 16 5 C -0.03 -0.38 12.03 66.89 0.80 0.42 16 6 C -0.20 -3.69 10.60 23.65 0.25 -3.44 16 7 C -0.27 -7.14 6.31 -19.00 -0.12 -7.26 16 8 C 0.58 19.55 7.78 86.65 0.67 20.22 16 9 O -0.58 -23.55 14.51 -4.07 -0.06 -23.61 16 10 N -0.70 -21.56 4.92 -445.21 -2.19 -23.75 16 11 C 0.17 6.35 2.13 45.13 0.10 6.45 16 12 H 0.06 2.45 7.57 -2.39 -0.02 2.43 16 13 C -0.13 -5.21 5.65 30.67 0.17 -5.03 16 14 C 0.18 9.10 5.30 86.36 0.46 9.55 16 15 N -0.60 -29.98 2.99 -699.11 -2.09 -32.07 16 16 C -0.27 -14.29 9.58 84.04 0.81 -13.49 16 17 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 18 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 19 N -0.94 -55.70 11.20 21.65 0.24 -55.46 16 20 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 C 0.12 4.75 6.13 86.36 0.53 5.27 16 25 C 0.10 3.38 3.16 30.78 0.10 3.48 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 O -0.57 -15.92 13.18 -148.98 -1.96 -17.88 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 2.51 6.49 -2.39 -0.02 2.50 16 33 H 0.25 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.18 2.34 7.74 -2.91 -0.02 2.32 16 35 H 0.41 10.12 7.77 -92.71 -0.72 9.40 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 3.52 6.06 -2.39 -0.01 3.50 16 39 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 40 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 43 H 0.40 7.24 9.08 -74.05 -0.67 6.56 16 Total: -1.00 -73.60 354.47 0.90 -72.70 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.35 Total: 25.08 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.24 Total: 12.55 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -4.04 Total: -111.27 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.98 Total: -45.01 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.60 0.90 -72.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090232254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.478 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds