Wall clock time and date at job start Fri Apr 10 2020 17:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46798 * 2 1 4 4 O 1.33660 * 125.80036 * 269.99674 * 3 2 1 5 5 C 1.34218 * 110.90382 * 180.02562 * 4 3 2 6 6 C 1.34175 * 109.12833 * 359.71285 * 5 4 3 7 7 C 1.36415 * 125.80334 * 90.00554 * 3 2 1 8 8 C 1.47376 * 127.19289 * 359.97438 * 7 3 2 9 9 O 1.21620 * 119.99755 * 0.02562 * 8 7 3 10 10 N 1.34773 * 120.00233 * 180.02562 * 8 7 3 11 11 C 1.46507 * 119.99780 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46177 * 34.97940 * 11 10 8 13 13 C 1.53039 * 109.46029 * 275.00311 * 11 10 8 14 14 C 1.53194 * 109.31275 * 178.63070 * 13 11 10 15 15 N 1.46934 * 108.77480 * 54.63368 * 14 13 11 16 16 C 1.36939 * 120.62884 * 126.11394 * 15 14 13 17 17 H 1.07992 * 120.00044 * 332.70780 * 16 15 14 18 18 C 1.38807 * 119.99712 * 152.70003 * 16 15 14 19 19 N 1.31624 * 120.00086 * 159.47722 * 18 16 15 20 20 Si 1.86803 * 120.00386 * 339.48000 * 18 16 15 21 21 H 1.48500 * 109.47214 * 93.00133 * 20 18 16 22 22 H 1.48499 * 109.47277 * 213.00605 * 20 18 16 23 23 H 1.48503 * 109.46657 * 333.00776 * 20 18 16 24 24 C 1.46924 * 118.73496 * 306.39588 * 15 14 13 25 25 C 1.53040 * 109.44366 * 154.94578 * 11 10 8 26 26 H 1.08997 * 109.50336 * 61.39576 * 25 11 10 27 27 O 1.42904 * 109.49839 * 301.32509 * 25 11 10 28 28 H 1.08998 * 109.46969 * 60.00172 * 1 2 3 29 29 H 1.09003 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46949 * 299.99388 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99908 * 2 1 3 32 32 H 1.08999 * 109.47260 * 120.00288 * 2 1 3 33 33 H 1.07999 * 125.43156 * 180.02562 * 5 4 3 34 34 H 1.07995 * 127.02194 * 180.26753 * 6 5 4 35 35 H 0.96998 * 119.99923 * 0.02562 * 10 8 7 36 36 H 1.08995 * 109.50155 * 58.67949 * 13 11 10 37 37 H 1.09006 * 109.52485 * 298.59716 * 13 11 10 38 38 H 1.08997 * 109.58226 * 294.84905 * 14 13 11 39 39 H 1.09000 * 109.70496 * 174.49130 * 14 13 11 40 40 H 0.96994 * 120.00377 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.58128 * 173.39637 * 24 15 14 42 42 H 1.08999 * 109.58395 * 293.81316 * 24 15 14 43 43 H 0.96692 * 113.99947 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2929 2.1580 -1.0841 5 6 2.7257 3.3807 -0.7390 6 6 2.7530 3.4761 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1544 1.7670 2.5157 9 8 1.7594 0.6497 2.7892 10 7 2.4603 2.6336 3.5015 11 6 2.3177 2.2295 4.9025 12 1 2.5698 1.1739 5.0034 13 6 0.8725 2.4539 5.3532 14 6 0.7189 1.9985 6.8078 15 7 1.7216 2.6912 7.6286 16 6 1.3460 3.3985 8.7394 17 1 0.3570 3.8284 8.7969 18 6 2.2365 3.5627 9.7915 19 7 2.0616 4.5404 10.6553 20 14 3.6831 2.3963 9.9816 21 1 4.8715 2.9659 9.2972 22 1 3.9838 2.2114 11.4240 23 1 3.3439 1.0841 9.3744 24 6 3.1341 2.6158 7.2313 25 6 3.2605 3.0644 5.7720 26 1 2.9936 4.1180 5.6904 27 8 4.6069 2.8779 5.3307 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0026 4.1645 -1.4285 34 1 3.0507 4.3338 1.1839 35 1 2.7750 3.5248 3.2834 36 1 0.1997 1.8773 4.7185 37 1 0.6271 3.5132 5.2758 38 1 0.8750 0.9217 6.8719 39 1 -0.2804 2.2449 7.1665 40 1 2.6840 4.6554 11.3902 41 1 3.7282 3.2715 7.8679 42 1 3.4871 1.5893 7.3300 43 1 5.2601 3.3782 5.8386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090232255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:39 Heat of formation + Delta-G solvation = -77.038393 kcal Electronic energy + Delta-G solvation = -26108.291289 eV Core-core repulsion = 22347.686590 eV Total energy + Delta-G solvation = -3760.604699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.54800 -41.01735 -39.47661 -37.05617 -35.95261 -34.92955 -34.27595 -33.58239 -31.78204 -30.72369 -29.72115 -27.16250 -25.25995 -24.52187 -23.89867 -23.24804 -21.88232 -21.42805 -20.64261 -19.13384 -18.63596 -18.32014 -17.67302 -17.27034 -16.90664 -16.65407 -16.13560 -15.84179 -15.71530 -15.35582 -15.17756 -15.03049 -14.76345 -14.63279 -14.20696 -14.01072 -13.90372 -13.70033 -13.55491 -13.25386 -13.09245 -12.72000 -12.52564 -12.48076 -12.36707 -12.03732 -11.95056 -11.73802 -11.42633 -11.14572 -11.04288 -10.82699 -10.68374 -10.09524 -9.53891 -9.03435 -8.19838 -5.53924 0.33686 1.14277 1.25123 1.41395 1.49389 1.81452 2.20939 2.33720 2.37167 2.86899 3.12121 3.31662 3.56926 3.72206 3.81327 3.89465 3.98493 4.04755 4.15877 4.22840 4.30745 4.32962 4.45498 4.51060 4.62178 4.67050 4.72581 4.80074 4.87772 4.90350 4.95648 4.99554 5.02696 5.11305 5.27560 5.30105 5.38126 5.46788 5.80926 6.04905 6.09739 6.56078 6.70066 6.86102 7.22193 7.54669 7.94675 8.99480 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.003416 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.511676 B = 8194.119838 C = 8554.393641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.071 3.929 4 O -0.179 6.179 5 C -0.028 4.028 6 C -0.200 4.200 7 C -0.266 4.266 8 C 0.585 3.415 9 O -0.575 6.575 10 N -0.699 5.699 11 C 0.170 3.830 12 H 0.068 0.932 13 C -0.126 4.126 14 C 0.145 3.855 15 N -0.613 5.613 16 C -0.252 4.252 17 H 0.060 0.940 18 C -0.028 4.028 19 N -0.951 5.951 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.310 1.310 23 H -0.270 1.270 24 C 0.099 3.901 25 C 0.097 3.903 26 H 0.070 0.930 27 O -0.570 6.570 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.175 0.825 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -2.623 -25.383 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C 0.017 3.983 4 O -0.075 6.075 5 C -0.093 4.093 6 C -0.219 4.219 7 C -0.270 4.270 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.349 5.349 11 C 0.065 3.935 12 H 0.086 0.914 13 C -0.166 4.166 14 C 0.019 3.981 15 N -0.339 5.339 16 C -0.381 4.381 17 H 0.077 0.923 18 C -0.223 4.223 19 N -0.597 5.597 20 Si 0.769 3.231 21 H -0.192 1.192 22 H -0.239 1.239 23 H -0.195 1.195 24 C -0.028 4.028 25 C 0.036 3.964 26 H 0.088 0.912 27 O -0.377 6.377 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.266 0.734 34 H 0.193 0.807 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.168 -3.806 -25.770 26.140 hybrid contribution 1.086 0.640 1.517 1.972 sum 3.254 -3.166 -24.253 24.675 Atomic orbital electron populations 1.21645 0.92756 1.03406 1.01686 1.20405 0.97453 0.85990 1.05123 1.23067 0.96978 0.94971 0.83242 1.83786 1.65221 1.23983 1.34544 1.24689 1.02042 0.85799 0.96728 1.23152 1.06042 0.97289 0.95429 1.21227 1.15214 0.97706 0.92872 1.17547 0.76349 0.84031 0.84670 1.90726 1.48686 1.21632 1.84627 1.45628 1.67087 1.17248 1.04891 1.20685 0.94370 0.98809 0.79643 0.91353 1.22230 0.95145 1.02294 0.96933 1.21087 0.93014 0.94584 0.89368 1.44406 1.02115 1.59201 1.28180 1.18880 1.00812 1.24848 0.93599 0.92264 1.25846 1.01374 0.98991 0.96096 1.69943 1.40167 1.31354 1.18199 0.86027 0.80528 0.81115 0.75453 1.19236 1.23872 1.19512 1.22048 0.86614 0.99125 0.94981 1.22410 0.82475 0.98760 0.92774 0.91210 1.86438 1.16320 1.73846 1.61070 0.91591 0.89939 0.94120 0.87868 0.88811 0.73358 0.80721 0.75432 0.90572 0.91165 0.95031 0.91259 0.92749 0.91585 0.94993 0.75638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 71.98 0.71 -1.78 16 2 C -0.05 -1.05 5.94 29.85 0.18 -0.87 16 3 C 0.07 1.59 6.63 25.26 0.17 1.76 16 4 O -0.18 -3.36 10.52 4.37 0.05 -3.32 16 5 C -0.03 -0.38 12.03 66.89 0.80 0.43 16 6 C -0.20 -3.50 10.60 23.65 0.25 -3.25 16 7 C -0.27 -6.56 6.31 -18.99 -0.12 -6.68 16 8 C 0.58 17.68 7.78 86.65 0.67 18.35 16 9 O -0.57 -20.63 14.51 -4.10 -0.06 -20.69 16 10 N -0.70 -19.62 4.91 -445.71 -2.19 -21.81 16 11 C 0.17 5.59 2.12 45.02 0.10 5.68 16 12 H 0.07 2.59 7.57 -2.39 -0.02 2.57 16 13 C -0.13 -4.18 5.65 30.67 0.17 -4.01 16 14 C 0.14 5.65 6.52 86.36 0.56 6.22 16 15 N -0.61 -28.19 2.77 -699.09 -1.93 -30.13 16 16 C -0.25 -13.88 10.03 84.03 0.84 -13.04 16 17 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 18 C -0.03 -1.57 5.23 84.86 0.44 -1.12 16 19 N -0.95 -58.02 13.97 21.65 0.30 -57.72 16 20 Si 0.94 45.30 24.35 68.60 1.67 46.97 16 21 H -0.27 -11.69 6.63 99.48 0.66 -11.03 16 22 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 23 H -0.27 -12.93 6.63 99.48 0.66 -12.27 16 24 C 0.10 4.05 3.83 86.36 0.33 4.38 16 25 C 0.10 3.21 3.14 30.67 0.10 3.31 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 O -0.57 -16.62 13.16 -148.98 -1.96 -18.58 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 2.28 6.49 -2.39 -0.02 2.27 16 33 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.18 2.23 7.74 -2.91 -0.02 2.21 16 35 H 0.41 9.48 7.77 -92.71 -0.72 8.76 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.07 2.87 4.49 -2.38 -0.01 2.86 16 42 H 0.03 1.36 7.09 -2.39 -0.02 1.34 16 43 H 0.39 8.58 9.08 -74.06 -0.67 7.91 16 Total: -1.00 -72.22 347.99 0.64 -71.57 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.44 Total: 24.32 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.21 Total: 9.37 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.82 Total: -109.65 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.97 Total: -42.58 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.97 kcal Total: -72.22 0.64 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090232255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.463 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds