Wall clock time and date at job start Fri Apr 10 2020 17:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34187 * 127.02081 * 2 1 4 4 O 1.34212 * 109.12114 * 180.22863 * 3 2 1 5 5 C 1.33653 * 110.91020 * 359.54525 * 4 3 2 6 6 C 1.50700 * 125.80050 * 180.15048 * 5 4 3 7 7 C 1.36411 * 108.39593 * 0.44839 * 5 4 3 8 8 C 1.47382 * 127.19323 * 179.73698 * 7 5 4 9 9 O 1.21618 * 119.99627 * 270.00618 * 8 7 5 10 10 N 1.34770 * 120.00115 * 89.99721 * 8 7 5 11 11 C 1.46505 * 120.00079 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.45854 * 35.02558 * 11 10 8 13 13 C 1.53042 * 109.45690 * 275.06930 * 11 10 8 14 14 C 1.53188 * 109.31650 * 301.34467 * 13 11 10 15 15 N 1.46930 * 108.77406 * 305.36647 * 14 13 11 16 16 C 1.36933 * 120.63276 * 233.63175 * 15 14 13 17 17 H 1.08006 * 119.99883 * 27.65842 * 16 15 14 18 18 C 1.38813 * 120.00251 * 207.66591 * 16 15 14 19 19 N 1.31622 * 119.99520 * 17.35839 * 18 16 15 20 20 Si 1.86796 * 120.00264 * 197.36187 * 18 16 15 21 21 H 1.48495 * 109.47470 * 89.99451 * 20 18 16 22 22 H 1.48504 * 109.47269 * 210.00129 * 20 18 16 23 23 H 1.48508 * 109.46900 * 329.99418 * 20 18 16 24 24 C 1.46934 * 118.73683 * 53.60571 * 15 14 13 25 25 C 1.53035 * 109.46195 * 155.00337 * 11 10 8 26 26 H 1.08997 * 109.50009 * 178.63966 * 25 11 10 27 27 O 1.42902 * 109.49537 * 298.70042 * 25 11 10 28 28 H 1.09003 * 109.46842 * 90.03079 * 1 2 3 29 29 H 1.08996 * 109.47264 * 210.02651 * 1 2 3 30 30 H 1.09000 * 109.47745 * 330.03188 * 1 2 3 31 31 H 1.07997 * 125.43634 * 359.95962 * 3 2 1 32 32 H 1.09000 * 109.47038 * 270.35322 * 6 5 4 33 33 H 1.08997 * 109.47529 * 30.35051 * 6 5 4 34 34 H 1.08996 * 109.47014 * 150.35560 * 6 5 4 35 35 H 0.96999 * 120.00112 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.49552 * 61.29547 * 13 11 10 37 37 H 1.09003 * 109.49742 * 181.38878 * 13 11 10 38 38 H 1.08996 * 109.58934 * 185.57953 * 14 13 11 39 39 H 1.09003 * 109.58525 * 65.14876 * 14 13 11 40 40 H 0.97001 * 119.99582 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58096 * 186.60652 * 24 15 14 42 42 H 1.08995 * 109.69959 * 66.25027 * 24 15 14 43 43 H 0.96704 * 113.99803 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5920 0.6589 -0.0051 5 6 3.6623 -0.6758 0.0014 6 6 4.9292 -1.4919 0.0017 7 6 2.3923 -1.1737 0.0010 8 6 1.9914 -2.5920 0.0015 9 8 1.8266 -3.1776 -1.0516 10 7 1.8075 -3.2399 1.1688 11 6 1.4095 -4.6498 1.1692 12 1 1.8791 -5.1599 0.3282 13 6 -0.1122 -4.7501 1.0407 14 6 -0.7694 -4.0028 2.2054 15 7 -0.2343 -4.5306 3.4679 16 6 -1.0770 -4.9828 4.4480 17 1 -2.0484 -5.3756 4.1860 18 6 -0.6829 -4.9362 5.7782 19 7 0.3218 -4.1668 6.1402 20 14 -1.5782 -5.9655 7.0542 21 1 -0.9249 -7.2944 7.1654 22 1 -1.5277 -5.2775 8.3693 23 1 -2.9940 -6.1428 6.6424 24 6 1.2222 -4.5646 3.6586 25 6 1.8569 -5.3055 2.4776 26 1 1.5399 -6.3483 2.4890 27 8 3.2805 -5.2387 2.5822 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5133 31 1 1.9894 2.1011 -0.0006 32 1 5.2349 -1.6885 -1.0259 33 1 5.7164 -0.9406 0.5158 34 1 4.7524 -2.4369 0.5153 35 1 1.9387 -2.7727 2.0087 36 1 -0.4278 -4.3036 0.0977 37 1 -0.4112 -5.7980 1.0658 38 1 -1.8484 -4.1540 2.1742 39 1 -0.5450 -2.9388 2.1299 40 1 0.5974 -4.1345 7.0697 41 1 1.4571 -5.0864 4.5863 42 1 1.6107 -3.5472 3.7032 43 1 3.6347 -5.6361 3.3895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090237329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:42 Heat of formation + Delta-G solvation = -55.155342 kcal Electronic energy + Delta-G solvation = -26763.088025 eV Core-core repulsion = 23003.432246 eV Total energy + Delta-G solvation = -3759.655779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49664 -39.64790 -37.73296 -35.30736 -34.04048 -33.86547 -32.57187 -31.80907 -29.69744 -28.91453 -28.02416 -26.47498 -25.37571 -23.34172 -22.25809 -21.73426 -20.11230 -19.65553 -18.70891 -17.74713 -16.96727 -16.57656 -16.31418 -15.80628 -15.22534 -14.99793 -14.76407 -14.20448 -13.94130 -13.75987 -13.65801 -13.32205 -13.24874 -13.08895 -12.92340 -12.75743 -12.59411 -12.35443 -12.23288 -11.85242 -11.70565 -11.29910 -11.10989 -11.03128 -10.86682 -10.45452 -10.22577 -10.02148 -9.84175 -9.57927 -9.37438 -9.31370 -8.68542 -8.54587 -8.44160 -6.81137 -5.91367 -3.34641 1.66355 2.28583 2.83521 2.87045 3.30408 3.38425 3.39188 3.63909 4.37981 4.48892 4.57809 4.88990 5.00545 5.16353 5.23402 5.29995 5.38491 5.39336 5.44808 5.58916 5.67084 5.69130 5.70197 5.81221 5.89168 5.91374 5.97366 6.02063 6.16925 6.23869 6.42441 6.43768 6.44792 6.69037 6.80021 6.94852 7.03773 7.09138 7.38880 7.68643 7.90144 8.06789 8.31784 8.54768 9.07078 9.69950 10.25727 11.16716 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.004201 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.760912 B = 6662.891903 C = 6934.244895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.144 4.144 3 C -0.046 4.046 4 O -0.176 6.176 5 C 0.040 3.960 6 C -0.079 4.079 7 C -0.223 4.223 8 C 0.592 3.408 9 O -0.546 6.546 10 N -0.694 5.694 11 C 0.164 3.836 12 H 0.079 0.921 13 C -0.145 4.145 14 C 0.146 3.854 15 N -0.587 5.587 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.146 3.854 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.573 6.573 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.205 0.795 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.255 0.745 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 6.397 -9.531 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C -0.112 4.112 4 O -0.072 6.072 5 C -0.012 4.012 6 C -0.135 4.135 7 C -0.227 4.227 8 C 0.377 3.623 9 O -0.424 6.424 10 N -0.345 5.345 11 C 0.060 3.940 12 H 0.097 0.903 13 C -0.185 4.185 14 C 0.019 3.981 15 N -0.311 5.311 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.019 3.981 25 C 0.006 3.994 26 H 0.080 0.920 27 O -0.378 6.378 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.222 0.778 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.042 0.958 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.216 6.473 -10.668 13.941 hybrid contribution -0.560 -0.528 1.729 1.893 sum 5.655 5.945 -8.939 12.134 Atomic orbital electron populations 1.20207 0.88599 1.03218 1.02338 1.21365 0.96879 0.90579 1.05731 1.23566 0.79674 0.99427 1.08561 1.83689 1.29570 1.21943 1.72020 1.22509 0.96109 0.80717 1.01849 1.20426 0.91055 0.98017 1.03983 1.21102 0.93122 0.94282 1.14220 1.17240 0.76615 0.84494 0.83981 1.90759 1.52052 1.68019 1.31560 1.46015 1.67908 1.12182 1.08376 1.20847 0.94955 0.80761 0.97486 0.90298 1.22408 0.94103 1.02052 0.99956 1.20921 0.96743 0.94705 0.85688 1.43956 1.00913 1.72112 1.14131 1.19221 0.99456 1.34140 0.85600 0.91372 1.25048 0.98828 0.98505 0.97148 1.70023 1.30157 1.37905 1.16585 0.86268 0.79476 0.79972 0.80935 1.21399 1.21726 1.20355 1.21391 0.83633 0.97492 0.95574 1.22933 0.80208 0.99376 0.96841 0.91983 1.86400 1.21220 1.84092 1.46062 0.91169 0.90993 0.91175 0.77807 0.89611 0.89982 0.88775 0.75766 0.91715 0.91073 0.92472 0.96190 0.93522 0.88936 0.95768 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.38 36.00 0.37 -0.69 16 2 C -0.14 -2.00 6.38 -102.50 -0.65 -2.65 16 3 C -0.05 -0.55 11.96 29.30 0.35 -0.20 16 4 O -0.18 -2.31 10.52 7.66 0.08 -2.23 16 5 C 0.04 0.56 7.37 -34.97 -0.26 0.30 16 6 C -0.08 -0.87 10.24 36.01 0.37 -0.50 16 7 C -0.22 -3.53 6.07 -103.28 -0.63 -4.16 16 8 C 0.59 10.55 7.22 -12.54 -0.09 10.46 16 9 O -0.55 -11.26 16.77 5.26 0.09 -11.17 16 10 N -0.69 -12.11 4.15 -54.86 -0.23 -12.33 16 11 C 0.16 2.95 2.47 -67.89 -0.17 2.78 16 12 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 13 C -0.14 -2.60 5.77 -26.61 -0.15 -2.75 16 14 C 0.15 2.95 6.26 -3.71 -0.02 2.92 16 15 N -0.59 -13.71 2.99 -172.32 -0.52 -14.23 16 16 C -0.25 -6.62 9.58 -15.06 -0.14 -6.76 16 17 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 18 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 19 N -0.90 -24.71 11.19 55.49 0.62 -24.09 16 20 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.15 3.17 4.64 -3.71 -0.02 3.15 16 25 C 0.07 1.23 3.36 -26.62 -0.09 1.14 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 O -0.57 -9.48 13.21 -35.23 -0.47 -9.95 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.21 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.41 7.25 6.85 -40.82 -0.28 6.97 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 39 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 40 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.09 2.25 6.03 -51.93 -0.31 1.94 16 42 H 0.02 0.56 6.64 -51.93 -0.35 0.21 16 43 H 0.38 4.96 9.08 45.56 0.41 5.38 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -31.37 355.54 -6.81 -38.18 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.50 Total: 11.67 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.22 Total: 3.04 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.12 Total: -50.65 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.30 Total: -23.35 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.37 -6.81 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090237329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.979 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds