Wall clock time and date at job start Fri Apr 10 2020 17:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34187 * 127.02081 * 2 1 4 4 O 1.34212 * 109.12114 * 180.22863 * 3 2 1 5 5 C 1.33653 * 110.91020 * 359.54525 * 4 3 2 6 6 C 1.50700 * 125.80050 * 180.15048 * 5 4 3 7 7 C 1.36411 * 108.39593 * 0.44839 * 5 4 3 8 8 C 1.47382 * 127.19323 * 179.73698 * 7 5 4 9 9 O 1.21618 * 119.99627 * 270.00618 * 8 7 5 10 10 N 1.34770 * 120.00115 * 89.99721 * 8 7 5 11 11 C 1.46505 * 120.00079 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.45854 * 35.02558 * 11 10 8 13 13 C 1.53042 * 109.45690 * 275.06930 * 11 10 8 14 14 C 1.53188 * 109.31650 * 301.34467 * 13 11 10 15 15 N 1.46930 * 108.77406 * 305.36647 * 14 13 11 16 16 C 1.36933 * 120.63276 * 233.63175 * 15 14 13 17 17 H 1.08006 * 119.99883 * 27.65842 * 16 15 14 18 18 C 1.38813 * 120.00251 * 207.66591 * 16 15 14 19 19 N 1.31622 * 119.99520 * 17.35839 * 18 16 15 20 20 Si 1.86796 * 120.00264 * 197.36187 * 18 16 15 21 21 H 1.48495 * 109.47470 * 89.99451 * 20 18 16 22 22 H 1.48504 * 109.47269 * 210.00129 * 20 18 16 23 23 H 1.48508 * 109.46900 * 329.99418 * 20 18 16 24 24 C 1.46934 * 118.73683 * 53.60571 * 15 14 13 25 25 C 1.53035 * 109.46195 * 155.00337 * 11 10 8 26 26 H 1.08997 * 109.50009 * 178.63966 * 25 11 10 27 27 O 1.42902 * 109.49537 * 298.70042 * 25 11 10 28 28 H 1.09003 * 109.46842 * 90.03079 * 1 2 3 29 29 H 1.08996 * 109.47264 * 210.02651 * 1 2 3 30 30 H 1.09000 * 109.47745 * 330.03188 * 1 2 3 31 31 H 1.07997 * 125.43634 * 359.95962 * 3 2 1 32 32 H 1.09000 * 109.47038 * 270.35322 * 6 5 4 33 33 H 1.08997 * 109.47529 * 30.35051 * 6 5 4 34 34 H 1.08996 * 109.47014 * 150.35560 * 6 5 4 35 35 H 0.96999 * 120.00112 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.49552 * 61.29547 * 13 11 10 37 37 H 1.09003 * 109.49742 * 181.38878 * 13 11 10 38 38 H 1.08996 * 109.58934 * 185.57953 * 14 13 11 39 39 H 1.09003 * 109.58525 * 65.14876 * 14 13 11 40 40 H 0.97001 * 119.99582 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58096 * 186.60652 * 24 15 14 42 42 H 1.08995 * 109.69959 * 66.25027 * 24 15 14 43 43 H 0.96704 * 113.99803 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5920 0.6589 -0.0051 5 6 3.6623 -0.6758 0.0014 6 6 4.9292 -1.4919 0.0017 7 6 2.3923 -1.1737 0.0010 8 6 1.9914 -2.5920 0.0015 9 8 1.8266 -3.1776 -1.0516 10 7 1.8075 -3.2399 1.1688 11 6 1.4095 -4.6498 1.1692 12 1 1.8791 -5.1599 0.3282 13 6 -0.1122 -4.7501 1.0407 14 6 -0.7694 -4.0028 2.2054 15 7 -0.2343 -4.5306 3.4679 16 6 -1.0770 -4.9828 4.4480 17 1 -2.0484 -5.3756 4.1860 18 6 -0.6829 -4.9362 5.7782 19 7 0.3218 -4.1668 6.1402 20 14 -1.5782 -5.9655 7.0542 21 1 -0.9249 -7.2944 7.1654 22 1 -1.5277 -5.2775 8.3693 23 1 -2.9940 -6.1428 6.6424 24 6 1.2222 -4.5646 3.6586 25 6 1.8569 -5.3055 2.4776 26 1 1.5399 -6.3483 2.4890 27 8 3.2805 -5.2387 2.5822 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5133 31 1 1.9894 2.1011 -0.0006 32 1 5.2349 -1.6885 -1.0259 33 1 5.7164 -0.9406 0.5158 34 1 4.7524 -2.4369 0.5153 35 1 1.9387 -2.7727 2.0087 36 1 -0.4278 -4.3036 0.0977 37 1 -0.4112 -5.7980 1.0658 38 1 -1.8484 -4.1540 2.1742 39 1 -0.5450 -2.9388 2.1299 40 1 0.5974 -4.1345 7.0697 41 1 1.4571 -5.0864 4.5863 42 1 1.6107 -3.5472 3.7032 43 1 3.6347 -5.6361 3.3895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090237329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:41 Heat of formation + Delta-G solvation = -77.223101 kcal Electronic energy + Delta-G solvation = -26764.044955 eV Core-core repulsion = 23003.432246 eV Total energy + Delta-G solvation = -3760.612709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.52141 -41.12556 -39.26523 -36.86315 -35.66907 -34.92954 -33.80149 -33.31463 -31.37121 -30.50757 -29.06576 -27.54460 -27.09563 -24.71028 -23.83534 -23.41154 -21.36695 -20.69037 -20.28158 -19.01133 -18.66517 -18.08362 -17.42680 -17.06325 -16.74188 -16.62101 -16.14309 -15.79886 -15.48159 -15.20755 -15.04721 -14.69542 -14.38871 -14.21877 -14.14118 -13.85547 -13.79165 -13.60584 -13.51248 -13.29449 -13.26544 -12.87794 -12.71885 -12.67202 -12.29434 -12.17186 -11.99158 -11.83495 -11.36005 -11.14159 -10.92341 -10.59024 -10.43773 -10.09062 -9.43252 -8.72183 -7.90037 -5.35754 0.62970 1.24646 1.46039 1.48127 1.50572 1.58228 1.88630 2.31022 2.49978 3.12371 3.26536 3.54046 3.64274 3.74310 3.88016 4.04052 4.11599 4.20715 4.24931 4.34728 4.36567 4.44791 4.56402 4.63209 4.68171 4.74497 4.75860 4.87990 4.92669 4.96905 5.01862 5.05868 5.15165 5.19675 5.29397 5.47601 5.48451 5.58212 5.65347 6.07315 6.34291 6.46955 6.82323 7.11619 7.13637 7.79365 8.31466 9.15708 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.004201 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.760912 B = 6662.891903 C = 6934.244895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.172 4.172 3 C -0.029 4.029 4 O -0.175 6.175 5 C 0.041 3.959 6 C -0.078 4.078 7 C -0.261 4.261 8 C 0.597 3.403 9 O -0.578 6.578 10 N -0.689 5.689 11 C 0.166 3.834 12 H 0.077 0.923 13 C -0.132 4.132 14 C 0.148 3.852 15 N -0.601 5.601 16 C -0.265 4.265 17 H 0.068 0.932 18 C -0.042 4.042 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.284 1.284 22 H -0.297 1.297 23 H -0.272 1.272 24 C 0.158 3.842 25 C 0.086 3.914 26 H 0.066 0.934 27 O -0.572 6.572 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.249 0.751 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.251 0.749 41 H 0.066 0.934 42 H 0.008 0.992 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 7.083 -9.973 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.174 4.174 3 C -0.094 4.094 4 O -0.072 6.072 5 C -0.011 4.011 6 C -0.135 4.135 7 C -0.265 4.265 8 C 0.384 3.616 9 O -0.459 6.459 10 N -0.339 5.339 11 C 0.061 3.939 12 H 0.095 0.905 13 C -0.172 4.172 14 C 0.023 3.977 15 N -0.325 5.325 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.238 4.238 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.196 1.196 24 C 0.032 3.968 25 C 0.025 3.975 26 H 0.083 0.917 27 O -0.379 6.379 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.265 0.735 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.240 0.760 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.025 0.975 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.554 7.153 -11.115 14.754 hybrid contribution -0.644 -0.677 1.852 2.074 sum 5.909 6.476 -9.264 12.754 Atomic orbital electron populations 1.20199 0.87935 1.03170 1.02676 1.21643 0.97683 0.90581 1.07454 1.24355 0.78610 1.00683 1.05746 1.83723 1.30342 1.21386 1.71699 1.22914 0.96367 0.81205 1.00599 1.20526 0.90622 0.97380 1.04924 1.21169 0.94792 0.93635 1.16911 1.17497 0.75566 0.85243 0.83274 1.90726 1.53643 1.69039 1.32505 1.45984 1.67683 1.11912 1.08330 1.20804 0.94897 0.81150 0.97064 0.90496 1.22262 0.93875 1.02155 0.98933 1.20950 0.96940 0.94571 0.85277 1.44155 1.01384 1.72422 1.14566 1.19498 0.99808 1.33767 0.86402 0.91442 1.25703 0.99806 0.99555 0.98753 1.70155 1.31559 1.39249 1.16561 0.85318 0.78727 0.78380 0.78300 1.21084 1.22351 1.19646 1.21189 0.83190 0.96577 0.95871 1.22575 0.80874 0.98838 0.95257 0.91656 1.86382 1.19946 1.84350 1.47220 0.90646 0.93490 0.88713 0.73515 0.88416 0.87557 0.89960 0.76007 0.91239 0.90263 0.92395 0.96748 0.93964 0.91537 0.97450 0.75880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.38 71.23 0.74 -1.23 16 2 C -0.17 -4.59 6.38 -18.49 -0.12 -4.71 16 3 C -0.03 -0.60 11.96 66.90 0.80 0.20 16 4 O -0.18 -4.22 10.52 4.49 0.05 -4.17 16 5 C 0.04 1.10 7.37 25.26 0.19 1.29 16 6 C -0.08 -1.62 10.24 71.24 0.73 -0.90 16 7 C -0.26 -8.18 6.07 -18.99 -0.12 -8.29 16 8 C 0.60 21.44 7.22 86.65 0.63 22.07 16 9 O -0.58 -24.07 16.77 -4.09 -0.07 -24.14 16 10 N -0.69 -24.21 4.15 -445.72 -1.85 -26.06 16 11 C 0.17 5.90 2.47 45.02 0.11 6.01 16 12 H 0.08 2.83 7.58 -2.39 -0.02 2.81 16 13 C -0.13 -4.68 5.77 30.67 0.18 -4.50 16 14 C 0.15 6.00 6.26 86.36 0.54 6.54 16 15 N -0.60 -28.22 2.99 -699.09 -2.09 -30.32 16 16 C -0.26 -13.77 9.58 84.03 0.81 -12.96 16 17 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 18 C -0.04 -2.22 4.91 84.86 0.42 -1.80 16 19 N -0.93 -51.55 11.19 21.65 0.24 -51.31 16 20 Si 0.96 42.74 29.59 68.60 2.03 44.77 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C 0.16 6.96 4.64 86.36 0.40 7.36 16 25 C 0.09 3.09 3.36 30.67 0.10 3.19 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 O -0.57 -18.44 13.21 -148.98 -1.97 -20.41 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.25 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 35 H 0.40 14.67 6.85 -92.71 -0.64 14.03 16 36 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 39 H 0.01 0.61 7.74 -2.39 -0.02 0.59 16 40 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 41 H 0.07 3.29 6.03 -2.39 -0.01 3.27 16 42 H 0.01 0.36 6.64 -2.39 -0.02 0.34 16 43 H 0.39 9.94 9.08 -74.05 -0.67 9.27 16 Total: -1.00 -67.27 355.54 1.48 -65.80 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.26 Total: 33.57 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.40 Total: 12.27 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.70 Total: -107.68 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.99 Total: -48.71 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.27 1.48 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090237329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.425 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds