Wall clock time and date at job start Fri Apr 10 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34171 * 127.02185 * 2 1 4 4 O 1.34222 * 109.12668 * 179.97438 * 3 2 1 5 5 C 1.33655 * 110.90080 * 359.76616 * 4 3 2 6 6 C 1.50710 * 125.79931 * 180.24928 * 5 4 3 7 7 C 1.36419 * 108.40065 * 0.38141 * 5 4 3 8 8 C 1.47375 * 127.19034 * 179.89318 * 7 5 4 9 9 O 1.21616 * 120.00254 * 269.68790 * 8 7 5 10 10 N 1.34775 * 119.99909 * 89.96546 * 8 7 5 11 11 C 1.46495 * 120.00375 * 179.71821 * 10 8 7 12 12 H 1.09000 * 109.46519 * 325.00787 * 11 10 8 13 13 C 1.53043 * 109.45796 * 84.97441 * 11 10 8 14 14 C 1.53190 * 109.31596 * 181.38983 * 13 11 10 15 15 N 1.46935 * 108.77360 * 305.36355 * 14 13 11 16 16 C 1.36935 * 120.63163 * 233.58744 * 15 14 13 17 17 H 1.07999 * 119.99927 * 151.83513 * 16 15 14 18 18 C 1.38813 * 119.99844 * 331.83407 * 16 15 14 19 19 N 1.31623 * 120.00129 * 343.07432 * 18 16 15 20 20 Si 1.86805 * 119.99914 * 163.07590 * 18 16 15 21 21 H 1.48503 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47049 * 119.99983 * 20 18 16 23 23 H 1.48501 * 109.47011 * 239.99837 * 20 18 16 24 24 C 1.46926 * 118.73584 * 53.60748 * 15 14 13 25 25 C 1.53038 * 109.46659 * 205.02602 * 11 10 8 26 26 H 1.09004 * 109.49627 * 298.57446 * 25 11 10 27 27 O 1.42904 * 109.49303 * 58.66459 * 25 11 10 28 28 H 1.09006 * 109.46578 * 270.04206 * 1 2 3 29 29 H 1.08997 * 109.46899 * 30.03946 * 1 2 3 30 30 H 1.08993 * 109.47143 * 150.04449 * 1 2 3 31 31 H 1.08002 * 125.44413 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46570 * 270.15991 * 6 5 4 33 33 H 1.08997 * 109.47063 * 30.16023 * 6 5 4 34 34 H 1.08998 * 109.46820 * 150.15733 * 6 5 4 35 35 H 0.97004 * 120.00090 * 359.72552 * 10 8 7 36 36 H 1.09001 * 109.49972 * 301.34203 * 13 11 10 37 37 H 1.09005 * 109.50081 * 61.43651 * 13 11 10 38 38 H 1.08993 * 109.58710 * 65.14938 * 14 13 11 39 39 H 1.08995 * 109.59104 * 185.57765 * 14 13 11 40 40 H 0.97000 * 119.99645 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.58698 * 66.17749 * 24 15 14 42 42 H 1.08995 * 109.58323 * 186.46140 * 24 15 14 43 43 H 0.96701 * 113.99825 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6759 0.0060 6 6 4.9292 -1.4921 0.0136 7 6 2.3922 -1.1738 0.0006 8 6 1.9914 -2.5920 0.0015 9 8 1.8258 -3.1778 -1.0513 10 7 1.8029 -3.2382 1.1691 11 6 1.3984 -4.6462 1.1701 12 1 0.7334 -4.8337 0.3270 13 6 2.6395 -5.5333 1.0475 14 6 2.2103 -7.0034 1.0139 15 7 1.3840 -7.2820 2.1966 16 6 1.6961 -8.3163 3.0379 17 1 1.4212 -8.2656 4.0811 18 6 2.3659 -9.4299 2.5499 19 7 2.4095 -9.6562 1.2540 20 14 3.2052 -10.6076 3.7324 21 1 3.0113 -10.1318 5.1257 22 1 2.6147 -11.9621 3.5846 23 1 4.6573 -10.6646 3.4269 24 6 0.2162 -6.4298 2.4590 25 6 0.6682 -4.9662 2.4764 26 1 1.3407 -4.8028 3.3186 27 8 -0.4734 -4.1163 2.6051 28 1 -0.3633 0.0008 1.0278 29 1 -0.3633 0.8896 -0.5144 30 1 -0.3633 -0.8903 -0.5131 31 1 1.9896 2.1011 0.0004 32 1 5.2396 -1.6905 -1.0122 33 1 5.7141 -0.9400 0.5305 34 1 4.7500 -2.4362 0.5281 35 1 1.9349 -2.7710 2.0089 36 1 3.1721 -5.2887 0.1285 37 1 3.2933 -5.3646 1.9032 38 1 1.6313 -7.1945 0.1104 39 1 3.0933 -7.6423 1.0264 40 1 2.8772 -10.4346 0.9131 41 1 -0.5253 -6.5741 1.6733 42 1 -0.2179 -6.6919 3.4238 43 1 -0.9852 -4.2645 3.4121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090237331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:46 Heat of formation + Delta-G solvation = -56.504857 kcal Electronic energy + Delta-G solvation = -26134.768797 eV Core-core repulsion = 22375.054499 eV Total energy + Delta-G solvation = -3759.714298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63789 -39.56788 -37.84495 -35.41514 -34.25286 -34.00294 -32.66144 -31.85444 -30.03047 -28.67479 -28.11056 -26.61579 -25.24439 -23.28789 -22.30631 -21.53271 -20.09800 -19.79056 -19.33603 -17.77227 -17.04628 -16.62543 -16.43844 -15.81332 -15.75955 -14.86349 -14.73674 -14.31861 -13.94588 -13.79079 -13.51612 -13.38861 -13.34729 -13.15593 -13.03322 -12.79850 -12.73500 -12.46618 -12.27963 -12.05850 -11.58588 -11.43980 -11.12717 -10.90733 -10.70824 -10.33298 -10.26842 -10.01761 -9.92647 -9.73447 -9.48272 -9.44287 -8.75451 -8.58486 -8.46959 -6.78446 -5.86567 -3.31199 1.52141 2.13762 2.73116 2.74235 3.32509 3.40635 3.42514 3.49347 4.34347 4.36530 4.50750 4.73704 4.87021 5.04314 5.16471 5.27957 5.29080 5.31410 5.44199 5.49217 5.52387 5.53968 5.58059 5.73362 5.76410 5.83004 5.95645 6.03860 6.09918 6.29878 6.30891 6.46980 6.51487 6.64682 6.76053 6.86217 6.95094 7.27092 7.58911 7.71682 7.75669 7.91201 8.36091 8.45094 9.11515 9.73777 10.29893 11.21980 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.003477 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.621013 B = 8051.119987 C = 8688.047218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.145 4.145 3 C -0.046 4.046 4 O -0.175 6.175 5 C 0.040 3.960 6 C -0.080 4.080 7 C -0.224 4.224 8 C 0.589 3.411 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.162 3.838 12 H 0.088 0.912 13 C -0.147 4.147 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.260 4.260 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.121 3.879 25 C 0.081 3.919 26 H 0.056 0.944 27 O -0.571 6.571 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.205 0.795 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.093 0.907 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.060 0.940 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 20.032 1.156 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.147 4.147 3 C -0.112 4.112 4 O -0.072 6.072 5 C -0.012 4.012 6 C -0.136 4.136 7 C -0.228 4.228 8 C 0.374 3.626 9 O -0.411 6.411 10 N -0.355 5.355 11 C 0.058 3.942 12 H 0.106 0.894 13 C -0.187 4.187 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.007 4.007 25 C 0.020 3.980 26 H 0.074 0.926 27 O -0.375 6.375 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.222 0.778 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.938 19.848 -0.260 19.872 hybrid contribution 0.062 -0.639 1.453 1.588 sum 1.001 19.209 1.193 19.272 Atomic orbital electron populations 1.20195 0.88593 1.02971 1.02518 1.21375 0.96889 0.90588 1.05874 1.23573 0.79686 0.99417 1.08532 1.83703 1.29545 1.21954 1.71989 1.22549 0.96129 0.80709 1.01797 1.20445 0.91009 0.97802 1.04353 1.21147 0.93087 0.94322 1.14257 1.17249 0.76908 0.84322 0.84096 1.90814 1.50874 1.67942 1.31425 1.46095 1.68771 1.12736 1.07895 1.21041 0.96350 0.78914 0.97883 0.89409 1.22614 0.96094 0.98896 1.01107 1.20827 0.96623 0.89544 0.88471 1.44050 1.25604 1.33075 1.28478 1.19198 1.34724 0.94820 0.90165 0.91505 1.25085 1.01835 0.96673 0.95784 1.70045 1.44437 1.28354 1.11360 0.86213 0.79303 0.80704 0.80451 1.20220 1.21628 1.21448 1.21528 0.90985 0.88507 0.99671 1.22765 0.86710 0.92170 0.96370 0.92603 1.86487 1.42122 1.62045 1.46825 0.90939 0.91342 0.91131 0.77801 0.89296 0.89915 0.88953 0.76945 0.91926 0.92299 0.95770 0.88870 0.93469 0.95316 0.92146 0.78028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.38 36.01 0.37 -0.53 16 2 C -0.15 -1.77 6.38 -102.50 -0.65 -2.43 16 3 C -0.05 -0.46 11.96 29.30 0.35 -0.11 16 4 O -0.18 -2.03 10.52 7.63 0.08 -1.95 16 5 C 0.04 0.49 7.37 -34.96 -0.26 0.24 16 6 C -0.08 -0.78 10.24 36.01 0.37 -0.41 16 7 C -0.22 -3.20 6.07 -103.28 -0.63 -3.83 16 8 C 0.59 9.98 7.22 -12.54 -0.09 9.89 16 9 O -0.53 -11.20 16.77 5.26 0.09 -11.11 16 10 N -0.71 -11.05 4.91 -54.86 -0.27 -11.32 16 11 C 0.16 2.94 2.12 -67.89 -0.14 2.79 16 12 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 13 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 14 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 15 N -0.59 -14.27 2.99 -172.32 -0.52 -14.79 16 16 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 17 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 18 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 19 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 20 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.12 2.44 6.14 -3.71 -0.02 2.42 16 25 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 O -0.57 -8.50 13.16 -35.23 -0.46 -8.96 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.21 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 35 H 0.40 5.36 8.59 -40.82 -0.35 5.01 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.37 3.97 9.08 45.56 0.41 4.38 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -33.18 359.78 -6.92 -40.11 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.67 Total: 8.17 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.19 Total: 3.39 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.16 Total: -51.13 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.30 Total: -22.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.18 -6.92 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090237331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.400 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds