Wall clock time and date at job start Fri Apr 10 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34171 * 127.02185 * 2 1 4 4 O 1.34222 * 109.12668 * 179.97438 * 3 2 1 5 5 C 1.33655 * 110.90080 * 359.76616 * 4 3 2 6 6 C 1.50710 * 125.79931 * 180.24928 * 5 4 3 7 7 C 1.36419 * 108.40065 * 0.38141 * 5 4 3 8 8 C 1.47375 * 127.19034 * 179.89318 * 7 5 4 9 9 O 1.21616 * 120.00254 * 269.68790 * 8 7 5 10 10 N 1.34775 * 119.99909 * 89.96546 * 8 7 5 11 11 C 1.46495 * 120.00375 * 179.71821 * 10 8 7 12 12 H 1.09000 * 109.46519 * 325.00787 * 11 10 8 13 13 C 1.53043 * 109.45796 * 84.97441 * 11 10 8 14 14 C 1.53190 * 109.31596 * 181.38983 * 13 11 10 15 15 N 1.46935 * 108.77360 * 305.36355 * 14 13 11 16 16 C 1.36935 * 120.63163 * 233.58744 * 15 14 13 17 17 H 1.07999 * 119.99927 * 151.83513 * 16 15 14 18 18 C 1.38813 * 119.99844 * 331.83407 * 16 15 14 19 19 N 1.31623 * 120.00129 * 343.07432 * 18 16 15 20 20 Si 1.86805 * 119.99914 * 163.07590 * 18 16 15 21 21 H 1.48503 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47049 * 119.99983 * 20 18 16 23 23 H 1.48501 * 109.47011 * 239.99837 * 20 18 16 24 24 C 1.46926 * 118.73584 * 53.60748 * 15 14 13 25 25 C 1.53038 * 109.46659 * 205.02602 * 11 10 8 26 26 H 1.09004 * 109.49627 * 298.57446 * 25 11 10 27 27 O 1.42904 * 109.49303 * 58.66459 * 25 11 10 28 28 H 1.09006 * 109.46578 * 270.04206 * 1 2 3 29 29 H 1.08997 * 109.46899 * 30.03946 * 1 2 3 30 30 H 1.08993 * 109.47143 * 150.04449 * 1 2 3 31 31 H 1.08002 * 125.44413 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46570 * 270.15991 * 6 5 4 33 33 H 1.08997 * 109.47063 * 30.16023 * 6 5 4 34 34 H 1.08998 * 109.46820 * 150.15733 * 6 5 4 35 35 H 0.97004 * 120.00090 * 359.72552 * 10 8 7 36 36 H 1.09001 * 109.49972 * 301.34203 * 13 11 10 37 37 H 1.09005 * 109.50081 * 61.43651 * 13 11 10 38 38 H 1.08993 * 109.58710 * 65.14938 * 14 13 11 39 39 H 1.08995 * 109.59104 * 185.57765 * 14 13 11 40 40 H 0.97000 * 119.99645 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.58698 * 66.17749 * 24 15 14 42 42 H 1.08995 * 109.58323 * 186.46140 * 24 15 14 43 43 H 0.96701 * 113.99825 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6759 0.0060 6 6 4.9292 -1.4921 0.0136 7 6 2.3922 -1.1738 0.0006 8 6 1.9914 -2.5920 0.0015 9 8 1.8258 -3.1778 -1.0513 10 7 1.8029 -3.2382 1.1691 11 6 1.3984 -4.6462 1.1701 12 1 0.7334 -4.8337 0.3270 13 6 2.6395 -5.5333 1.0475 14 6 2.2103 -7.0034 1.0139 15 7 1.3840 -7.2820 2.1966 16 6 1.6961 -8.3163 3.0379 17 1 1.4212 -8.2656 4.0811 18 6 2.3659 -9.4299 2.5499 19 7 2.4095 -9.6562 1.2540 20 14 3.2052 -10.6076 3.7324 21 1 3.0113 -10.1318 5.1257 22 1 2.6147 -11.9621 3.5846 23 1 4.6573 -10.6646 3.4269 24 6 0.2162 -6.4298 2.4590 25 6 0.6682 -4.9662 2.4764 26 1 1.3407 -4.8028 3.3186 27 8 -0.4734 -4.1163 2.6051 28 1 -0.3633 0.0008 1.0278 29 1 -0.3633 0.8896 -0.5144 30 1 -0.3633 -0.8903 -0.5131 31 1 1.9896 2.1011 0.0004 32 1 5.2396 -1.6905 -1.0122 33 1 5.7141 -0.9400 0.5305 34 1 4.7500 -2.4362 0.5281 35 1 1.9349 -2.7710 2.0089 36 1 3.1721 -5.2887 0.1285 37 1 3.2933 -5.3646 1.9032 38 1 1.6313 -7.1945 0.1104 39 1 3.0933 -7.6423 1.0264 40 1 2.8772 -10.4346 0.9131 41 1 -0.5253 -6.5741 1.6733 42 1 -0.2179 -6.6919 3.4238 43 1 -0.9852 -4.2645 3.4121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090237331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:46 Heat of formation + Delta-G solvation = -81.449776 kcal Electronic energy + Delta-G solvation = -26135.850490 eV Core-core repulsion = 22375.054499 eV Total energy + Delta-G solvation = -3760.795991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.53471 -41.00430 -39.36057 -36.99160 -35.78117 -34.93713 -33.83398 -33.40069 -31.73031 -30.24911 -29.09225 -27.55824 -26.93429 -24.72109 -23.88756 -23.10551 -21.44756 -20.93950 -20.57833 -19.07268 -18.56185 -18.05232 -17.61380 -17.12948 -16.92864 -16.64799 -15.97711 -15.73312 -15.59403 -15.14296 -15.01276 -14.57326 -14.49995 -14.26580 -14.15596 -13.87874 -13.80451 -13.63127 -13.56010 -13.30815 -13.27393 -12.98127 -12.75988 -12.41031 -12.31443 -12.10740 -12.05565 -11.89709 -11.50902 -11.17779 -11.02527 -10.58970 -10.45257 -10.11740 -9.44228 -8.77345 -7.90747 -5.38896 0.61416 1.23723 1.42929 1.48106 1.50132 1.60673 1.86044 2.23622 2.49035 3.10124 3.26714 3.53256 3.60954 3.71038 3.86578 3.97519 4.03667 4.19579 4.20745 4.35959 4.36934 4.50713 4.54765 4.62422 4.67409 4.74727 4.76572 4.82155 4.91004 4.96983 5.00132 5.02460 5.10365 5.18326 5.35002 5.41123 5.47378 5.59529 5.65116 6.06871 6.33390 6.46918 6.87082 7.08942 7.14911 7.76882 8.30026 9.16800 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.003477 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.621013 B = 8051.119987 C = 8688.047218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.171 4.171 3 C -0.025 4.025 4 O -0.175 6.175 5 C 0.044 3.956 6 C -0.082 4.082 7 C -0.258 4.258 8 C 0.594 3.406 9 O -0.583 6.583 10 N -0.691 5.691 11 C 0.169 3.831 12 H 0.053 0.947 13 C -0.129 4.129 14 C 0.181 3.819 15 N -0.603 5.603 16 C -0.266 4.266 17 H 0.078 0.922 18 C -0.050 4.050 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.118 3.882 25 C 0.104 3.896 26 H 0.075 0.925 27 O -0.571 6.571 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.039 0.961 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.058 0.942 37 H 0.073 0.927 38 H -0.010 1.010 39 H 0.064 0.936 40 H 0.251 0.749 41 H 0.010 0.990 42 H 0.077 0.923 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 22.838 3.356 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.173 4.173 3 C -0.090 4.090 4 O -0.071 6.071 5 C -0.008 4.008 6 C -0.138 4.138 7 C -0.263 4.263 8 C 0.380 3.620 9 O -0.464 6.464 10 N -0.340 5.340 11 C 0.064 3.936 12 H 0.072 0.928 13 C -0.169 4.169 14 C 0.054 3.946 15 N -0.328 5.328 16 C -0.395 4.395 17 H 0.095 0.905 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.222 1.222 23 H -0.217 1.217 24 C -0.009 4.009 25 C 0.042 3.958 26 H 0.093 0.907 27 O -0.378 6.378 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.266 0.734 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.008 0.992 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.327 22.704 2.007 22.831 hybrid contribution -0.158 -1.445 0.747 1.635 sum 1.170 21.259 2.754 21.468 Atomic orbital electron populations 1.20191 0.87837 1.02786 1.03030 1.21634 0.97701 0.90391 1.07593 1.24373 0.78482 1.00671 1.05488 1.83743 1.30432 1.21273 1.71635 1.22859 0.96173 0.81225 1.00536 1.20556 0.90855 0.97529 1.04875 1.21083 0.94844 0.93168 1.17175 1.17651 0.75596 0.85352 0.83357 1.90785 1.53076 1.69356 1.33149 1.45858 1.68081 1.11547 1.08507 1.20710 0.95180 0.80140 0.97570 0.92847 1.22332 0.96850 0.96185 1.01508 1.20540 0.94962 0.91722 0.87348 1.44260 1.27029 1.33412 1.28068 1.19606 1.33972 0.95065 0.90897 0.90483 1.25896 1.02897 0.98591 0.97160 1.70214 1.45703 1.28972 1.13324 0.85159 0.77674 0.78124 0.79158 1.18473 1.22211 1.21726 1.21689 0.89432 0.90002 0.99762 1.22300 0.87513 0.90023 0.95923 0.90726 1.86462 1.41713 1.60969 1.48670 0.90072 0.88595 0.94199 0.73363 0.88960 0.87219 0.89713 0.75199 0.92357 0.90804 0.99190 0.91726 0.94015 0.97155 0.90453 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.38 71.24 0.74 -0.85 16 2 C -0.17 -3.85 6.38 -18.49 -0.12 -3.97 16 3 C -0.02 -0.41 11.96 66.89 0.80 0.39 16 4 O -0.17 -3.52 10.52 4.38 0.05 -3.48 16 5 C 0.04 1.02 7.37 25.26 0.19 1.21 16 6 C -0.08 -1.49 10.24 71.24 0.73 -0.76 16 7 C -0.26 -7.19 6.07 -18.99 -0.12 -7.30 16 8 C 0.59 20.36 7.22 86.65 0.63 20.99 16 9 O -0.58 -25.56 16.77 -4.08 -0.07 -25.63 16 10 N -0.69 -21.30 4.91 -445.73 -2.19 -23.49 16 11 C 0.17 6.18 2.12 45.02 0.10 6.28 16 12 H 0.05 2.35 7.58 -2.39 -0.02 2.34 16 13 C -0.13 -5.11 5.65 30.67 0.17 -4.93 16 14 C 0.18 8.97 5.30 86.36 0.46 9.43 16 15 N -0.60 -29.67 2.99 -699.11 -2.09 -31.76 16 16 C -0.27 -14.06 9.58 84.03 0.81 -13.25 16 17 H 0.08 3.86 7.89 -2.91 -0.02 3.84 16 18 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 19 N -0.94 -55.36 11.20 21.65 0.24 -55.12 16 20 Si 0.97 43.62 29.59 68.60 2.03 45.65 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 C 0.12 4.71 6.14 86.36 0.53 5.24 16 25 C 0.10 3.36 3.14 30.67 0.10 3.46 16 26 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 27 O -0.57 -15.74 13.16 -148.98 -1.96 -17.70 16 28 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.25 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.66 7.93 -2.39 -0.02 1.64 16 35 H 0.41 10.40 8.59 -92.71 -0.80 9.60 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.06 3.57 6.06 -2.39 -0.01 3.55 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 43 H 0.40 7.14 9.08 -74.06 -0.67 6.46 16 Total: -1.00 -75.14 359.78 1.00 -74.15 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.43 Total: 23.76 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.42 Total: 13.61 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.04 Total: -110.37 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.98 Total: -46.80 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.14 1.00 -74.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090237331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.305 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds