Wall clock time and date at job start Fri Apr 10 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34178 * 127.02269 * 2 1 4 4 O 1.34218 * 109.12198 * 179.97438 * 3 2 1 5 5 C 1.33647 * 110.90829 * 359.72418 * 4 3 2 6 6 C 1.50708 * 125.79965 * 180.28664 * 5 4 3 7 7 C 1.36413 * 108.40206 * 0.44784 * 5 4 3 8 8 C 1.47377 * 127.19611 * 179.83651 * 7 5 4 9 9 O 1.21614 * 119.99925 * 269.68712 * 8 7 5 10 10 N 1.34774 * 119.99975 * 89.68489 * 8 7 5 11 11 C 1.46503 * 119.99739 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.46138 * 35.00381 * 11 10 8 13 13 C 1.53039 * 109.45952 * 275.02637 * 11 10 8 14 14 C 1.53197 * 109.31234 * 178.62934 * 13 11 10 15 15 N 1.46928 * 108.77465 * 54.63640 * 14 13 11 16 16 C 1.36930 * 120.63333 * 126.36987 * 15 14 13 17 17 H 1.08001 * 119.99728 * 332.80282 * 16 15 14 18 18 C 1.38814 * 120.00088 * 152.79419 * 16 15 14 19 19 N 1.31621 * 119.99775 * 159.75299 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 339.75744 * 18 16 15 21 21 H 1.48503 * 109.46938 * 94.88581 * 20 18 16 22 22 H 1.48496 * 109.47349 * 214.88673 * 20 18 16 23 23 H 1.48501 * 109.47221 * 334.89149 * 20 18 16 24 24 C 1.46935 * 118.73651 * 306.39280 * 15 14 13 25 25 C 1.53038 * 109.44587 * 154.96762 * 11 10 8 26 26 H 1.08994 * 109.50042 * 61.42430 * 25 11 10 27 27 O 1.42899 * 109.50073 * 301.32910 * 25 11 10 28 28 H 1.08997 * 109.47223 * 270.02450 * 1 2 3 29 29 H 1.08997 * 109.47291 * 30.02805 * 1 2 3 30 30 H 1.08998 * 109.46685 * 150.02651 * 1 2 3 31 31 H 1.07998 * 125.43903 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47247 * 270.18636 * 6 5 4 33 33 H 1.09000 * 109.47125 * 30.18699 * 6 5 4 34 34 H 1.09000 * 109.46833 * 150.19220 * 6 5 4 35 35 H 0.97000 * 120.00295 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.50210 * 298.57719 * 13 11 10 37 37 H 1.08995 * 109.49712 * 58.65244 * 13 11 10 38 38 H 1.09000 * 109.59007 * 174.42254 * 14 13 11 39 39 H 1.09005 * 109.58376 * 294.85233 * 14 13 11 40 40 H 0.96999 * 120.00093 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58114 * 173.39957 * 24 15 14 42 42 H 1.09002 * 109.58700 * 293.67679 * 24 15 14 43 43 H 0.96693 * 114.00530 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 4.9292 -1.4921 0.0156 7 6 2.3923 -1.1739 0.0007 8 6 1.9914 -2.5921 0.0010 9 8 1.8264 -3.1775 -1.0522 10 7 1.8077 -3.2402 1.1683 11 6 1.4086 -4.6498 1.1685 12 1 1.8770 -5.1599 0.3268 13 6 -0.1133 -4.7488 1.0418 14 6 -0.5240 -6.2243 1.0079 15 7 0.0280 -6.8961 2.1923 16 6 -0.7850 -7.6091 3.0324 17 1 -1.8306 -7.3524 3.1185 18 6 -0.2655 -8.6619 3.7730 19 7 -0.8982 -9.0868 4.8462 20 14 1.3315 -9.4755 3.2469 21 1 2.4658 -8.8609 3.9823 22 1 1.2717 -10.9274 3.5530 23 1 1.5267 -9.2850 1.7872 24 6 1.4690 -6.7879 2.4586 25 6 1.8572 -5.3061 2.4762 26 1 1.3700 -4.8123 3.3169 27 8 3.2750 -5.1861 2.6083 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3632 -0.8902 -0.5134 31 1 1.9895 2.1011 -0.0004 32 1 5.2404 -1.6907 -1.0099 33 1 5.7137 -0.9397 0.5329 34 1 4.7497 -2.4361 0.5301 35 1 1.9390 -2.7732 2.0082 36 1 -0.5820 -4.2604 1.8960 37 1 -0.4344 -4.2602 0.1220 38 1 -1.6112 -6.3014 1.0176 39 1 -0.1303 -6.6925 0.1057 40 1 -0.5350 -9.8222 5.3640 41 1 1.6966 -7.2369 3.4254 42 1 2.0249 -7.3042 1.6760 43 1 3.6296 -5.5816 3.4163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090237332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:49 Heat of formation + Delta-G solvation = -50.754763 kcal Electronic energy + Delta-G solvation = -26258.282201 eV Core-core repulsion = 22498.817245 eV Total energy + Delta-G solvation = -3759.464955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70397 -39.73885 -38.07113 -35.54837 -34.43991 -34.07915 -32.75011 -32.10493 -30.20962 -29.23746 -28.25274 -26.69549 -25.26347 -23.39829 -22.77908 -21.54900 -20.14065 -19.97822 -19.54235 -17.88259 -16.99903 -16.88010 -16.62534 -16.11712 -15.86749 -14.97483 -14.90748 -14.37720 -14.23190 -13.92871 -13.64085 -13.47079 -13.45225 -13.26305 -13.09484 -12.89107 -12.83813 -12.55627 -12.47197 -12.35959 -12.16530 -11.51477 -11.42902 -11.03299 -10.92297 -10.53890 -10.39261 -10.13242 -9.78348 -9.67609 -9.54011 -9.52827 -8.85232 -8.72392 -8.64604 -7.10707 -6.03973 -3.41481 1.46115 2.06711 2.62200 2.67124 3.22038 3.35860 3.43179 3.46102 4.27310 4.30391 4.43897 4.66242 4.79693 4.87840 4.95870 5.10139 5.17491 5.23957 5.25849 5.38930 5.42567 5.45520 5.51121 5.58311 5.66715 5.73775 5.76077 5.78173 5.97390 5.99996 6.20518 6.24001 6.24671 6.36079 6.47143 6.54752 6.67641 6.79379 6.89151 7.62789 7.75480 7.91364 8.23539 8.31997 8.82559 9.61147 9.97048 11.11578 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.003660 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.757791 B = 7647.454688 C = 8216.130907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.045 4.045 4 O -0.175 6.175 5 C 0.043 3.957 6 C -0.080 4.080 7 C -0.226 4.226 8 C 0.592 3.408 9 O -0.535 6.535 10 N -0.705 5.705 11 C 0.161 3.839 12 H 0.090 0.910 13 C -0.141 4.141 14 C 0.148 3.852 15 N -0.602 5.602 16 C -0.263 4.263 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.290 1.290 22 H -0.301 1.301 23 H -0.268 1.268 24 C 0.102 3.898 25 C 0.080 3.920 26 H 0.063 0.937 27 O -0.571 6.571 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.206 0.794 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 19.183 -6.505 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C -0.110 4.110 4 O -0.071 6.071 5 C -0.009 4.009 6 C -0.137 4.137 7 C -0.230 4.230 8 C 0.377 3.623 9 O -0.412 6.412 10 N -0.355 5.355 11 C 0.057 3.943 12 H 0.108 0.892 13 C -0.182 4.182 14 C 0.022 3.978 15 N -0.327 5.327 16 C -0.391 4.391 17 H 0.107 0.893 18 C -0.175 4.175 19 N -0.548 5.548 20 Si 0.712 3.288 21 H -0.218 1.218 22 H -0.229 1.229 23 H -0.193 1.193 24 C -0.025 4.025 25 C 0.019 3.981 26 H 0.081 0.919 27 O -0.376 6.376 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 8.440 19.100 -7.704 22.257 hybrid contribution 0.787 -0.614 0.824 1.294 sum 9.227 18.486 -6.880 21.776 Atomic orbital electron populations 1.20208 0.88576 1.03083 1.02526 1.21370 0.96864 0.90570 1.06051 1.23593 0.79662 0.99464 1.08328 1.83706 1.29575 1.21953 1.71916 1.22551 0.96139 0.80695 1.01502 1.20454 0.91013 0.97954 1.04238 1.21102 0.93137 0.94192 1.14616 1.17254 0.76606 0.84483 0.83989 1.90802 1.51126 1.67903 1.31403 1.46060 1.68930 1.12366 1.08116 1.20991 0.95365 0.79861 0.98054 0.89227 1.22427 0.93718 1.00053 1.01955 1.20970 0.98413 0.89250 0.89164 1.44327 1.02798 1.59582 1.25964 1.18946 0.94276 1.08815 1.17087 0.89335 1.25295 0.97846 0.97306 0.97075 1.69827 1.40756 1.28995 1.15240 0.86982 0.83676 0.78589 0.79598 1.21793 1.22926 1.19313 1.22025 0.86622 0.93122 1.00694 1.22785 0.80539 0.98208 0.96534 0.91888 1.86423 1.21799 1.82284 1.47089 0.90938 0.91207 0.91139 0.77750 0.89425 0.89924 0.88734 0.76648 0.91465 0.91342 0.91084 0.95300 0.92649 0.90462 0.94470 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.38 36.01 0.37 -0.46 16 2 C -0.15 -1.67 6.38 -102.49 -0.65 -2.32 16 3 C -0.04 -0.42 11.96 29.30 0.35 -0.07 16 4 O -0.17 -1.93 10.52 7.66 0.08 -1.85 16 5 C 0.04 0.51 7.37 -34.96 -0.26 0.25 16 6 C -0.08 -0.75 10.24 36.01 0.37 -0.38 16 7 C -0.23 -3.04 6.07 -103.27 -0.63 -3.67 16 8 C 0.59 9.31 7.22 -12.54 -0.09 9.22 16 9 O -0.54 -10.39 16.77 5.27 0.09 -10.31 16 10 N -0.71 -10.29 4.91 -54.86 -0.27 -10.56 16 11 C 0.16 2.71 2.12 -67.89 -0.14 2.56 16 12 H 0.09 1.71 7.57 -51.93 -0.39 1.31 16 13 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 14 C 0.15 2.90 6.52 -3.71 -0.02 2.87 16 15 N -0.60 -13.81 2.77 -172.31 -0.48 -14.28 16 16 C -0.26 -7.11 10.04 -15.06 -0.15 -7.26 16 17 H 0.09 2.55 8.05 -52.49 -0.42 2.12 16 18 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 19 N -0.91 -26.98 13.97 55.49 0.78 -26.21 16 20 Si 0.88 21.71 24.34 -169.99 -4.14 17.57 16 21 H -0.29 -6.76 6.70 56.52 0.38 -6.38 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.27 -6.59 6.45 56.52 0.36 -6.22 16 24 C 0.10 2.14 3.82 -3.71 -0.01 2.12 16 25 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 O -0.57 -8.67 13.16 -35.23 -0.46 -9.13 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.21 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 35 H 0.40 5.10 8.59 -40.82 -0.35 4.75 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.72 4.49 -51.93 -0.23 1.49 16 42 H 0.04 0.81 6.97 -51.93 -0.36 0.44 16 43 H 0.38 4.46 9.08 45.56 0.41 4.87 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -33.56 353.15 -5.87 -39.43 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.59 Total: 7.80 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.19 Total: 2.21 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.03 Total: -51.05 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.29 Total: -21.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.56 -5.87 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090237332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.322 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds