Wall clock time and date at job start Fri Apr 10 2020 17:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34178 * 127.02269 * 2 1 4 4 O 1.34218 * 109.12198 * 179.97438 * 3 2 1 5 5 C 1.33647 * 110.90829 * 359.72418 * 4 3 2 6 6 C 1.50708 * 125.79965 * 180.28664 * 5 4 3 7 7 C 1.36413 * 108.40206 * 0.44784 * 5 4 3 8 8 C 1.47377 * 127.19611 * 179.83651 * 7 5 4 9 9 O 1.21614 * 119.99925 * 269.68712 * 8 7 5 10 10 N 1.34774 * 119.99975 * 89.68489 * 8 7 5 11 11 C 1.46503 * 119.99739 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.46138 * 35.00381 * 11 10 8 13 13 C 1.53039 * 109.45952 * 275.02637 * 11 10 8 14 14 C 1.53197 * 109.31234 * 178.62934 * 13 11 10 15 15 N 1.46928 * 108.77465 * 54.63640 * 14 13 11 16 16 C 1.36930 * 120.63333 * 126.36987 * 15 14 13 17 17 H 1.08001 * 119.99728 * 332.80282 * 16 15 14 18 18 C 1.38814 * 120.00088 * 152.79419 * 16 15 14 19 19 N 1.31621 * 119.99775 * 159.75299 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 339.75744 * 18 16 15 21 21 H 1.48503 * 109.46938 * 94.88581 * 20 18 16 22 22 H 1.48496 * 109.47349 * 214.88673 * 20 18 16 23 23 H 1.48501 * 109.47221 * 334.89149 * 20 18 16 24 24 C 1.46935 * 118.73651 * 306.39280 * 15 14 13 25 25 C 1.53038 * 109.44587 * 154.96762 * 11 10 8 26 26 H 1.08994 * 109.50042 * 61.42430 * 25 11 10 27 27 O 1.42899 * 109.50073 * 301.32910 * 25 11 10 28 28 H 1.08997 * 109.47223 * 270.02450 * 1 2 3 29 29 H 1.08997 * 109.47291 * 30.02805 * 1 2 3 30 30 H 1.08998 * 109.46685 * 150.02651 * 1 2 3 31 31 H 1.07998 * 125.43903 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47247 * 270.18636 * 6 5 4 33 33 H 1.09000 * 109.47125 * 30.18699 * 6 5 4 34 34 H 1.09000 * 109.46833 * 150.19220 * 6 5 4 35 35 H 0.97000 * 120.00295 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.50210 * 298.57719 * 13 11 10 37 37 H 1.08995 * 109.49712 * 58.65244 * 13 11 10 38 38 H 1.09000 * 109.59007 * 174.42254 * 14 13 11 39 39 H 1.09005 * 109.58376 * 294.85233 * 14 13 11 40 40 H 0.96999 * 120.00093 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58114 * 173.39957 * 24 15 14 42 42 H 1.09002 * 109.58700 * 293.67679 * 24 15 14 43 43 H 0.96693 * 114.00530 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 4.9292 -1.4921 0.0156 7 6 2.3923 -1.1739 0.0007 8 6 1.9914 -2.5921 0.0010 9 8 1.8264 -3.1775 -1.0522 10 7 1.8077 -3.2402 1.1683 11 6 1.4086 -4.6498 1.1685 12 1 1.8770 -5.1599 0.3268 13 6 -0.1133 -4.7488 1.0418 14 6 -0.5240 -6.2243 1.0079 15 7 0.0280 -6.8961 2.1923 16 6 -0.7850 -7.6091 3.0324 17 1 -1.8306 -7.3524 3.1185 18 6 -0.2655 -8.6619 3.7730 19 7 -0.8982 -9.0868 4.8462 20 14 1.3315 -9.4755 3.2469 21 1 2.4658 -8.8609 3.9823 22 1 1.2717 -10.9274 3.5530 23 1 1.5267 -9.2850 1.7872 24 6 1.4690 -6.7879 2.4586 25 6 1.8572 -5.3061 2.4762 26 1 1.3700 -4.8123 3.3169 27 8 3.2750 -5.1861 2.6083 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3632 -0.8902 -0.5134 31 1 1.9895 2.1011 -0.0004 32 1 5.2404 -1.6907 -1.0099 33 1 5.7137 -0.9397 0.5329 34 1 4.7497 -2.4361 0.5301 35 1 1.9390 -2.7732 2.0082 36 1 -0.5820 -4.2604 1.8960 37 1 -0.4344 -4.2602 0.1220 38 1 -1.6112 -6.3014 1.0176 39 1 -0.1303 -6.6925 0.1057 40 1 -0.5350 -9.8222 5.3640 41 1 1.6966 -7.2369 3.4254 42 1 2.0249 -7.3042 1.6760 43 1 3.6296 -5.5816 3.4163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090237332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:48 Heat of formation + Delta-G solvation = -76.973493 kcal Electronic energy + Delta-G solvation = -26259.419130 eV Core-core repulsion = 22498.817245 eV Total energy + Delta-G solvation = -3760.601885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53648 -41.07814 -39.51385 -37.05338 -35.88143 -34.94405 -34.09612 -33.46285 -31.84512 -30.74007 -29.11657 -27.56484 -26.87422 -24.91132 -24.10853 -23.08312 -21.44523 -21.07541 -20.61493 -19.15032 -18.55453 -18.31711 -17.85738 -17.27509 -16.91131 -16.58711 -16.15565 -16.02433 -15.41091 -15.24011 -15.07139 -14.69399 -14.60293 -14.32099 -14.18411 -14.15056 -13.99984 -13.79879 -13.68073 -13.56721 -13.28445 -13.09648 -12.73505 -12.52182 -12.37064 -12.30962 -12.04028 -11.74280 -11.50059 -11.22945 -11.11644 -10.70663 -10.45015 -10.17355 -9.44287 -9.03905 -8.19437 -5.53765 0.61470 1.23622 1.25295 1.41496 1.42428 1.49492 1.85736 2.21240 2.37303 2.86499 3.11745 3.30478 3.52874 3.69877 3.75856 3.94374 3.99818 4.04240 4.20047 4.21909 4.32019 4.36522 4.52112 4.54805 4.62506 4.66308 4.74311 4.75687 4.77305 4.85625 4.89383 4.97734 4.98531 5.01944 5.18525 5.26880 5.36698 5.47527 5.80660 6.07128 6.09706 6.44567 6.70276 6.85962 7.11969 7.54628 7.94344 8.99839 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.003660 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.757791 B = 7647.454688 C = 8216.130907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.028 4.028 4 O -0.176 6.176 5 C 0.043 3.957 6 C -0.081 4.081 7 C -0.258 4.258 8 C 0.597 3.403 9 O -0.578 6.578 10 N -0.693 5.693 11 C 0.167 3.833 12 H 0.069 0.931 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.613 5.613 16 C -0.252 4.252 17 H 0.060 0.940 18 C -0.028 4.028 19 N -0.952 5.952 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.311 1.311 23 H -0.268 1.268 24 C 0.099 3.901 25 C 0.099 3.901 26 H 0.070 0.930 27 O -0.568 6.568 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.248 0.752 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.411 0.589 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.232 21.716 -6.795 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.172 4.172 3 C -0.093 4.093 4 O -0.072 6.072 5 C -0.009 4.009 6 C -0.137 4.137 7 C -0.263 4.263 8 C 0.384 3.616 9 O -0.458 6.458 10 N -0.342 5.342 11 C 0.062 3.938 12 H 0.087 0.913 13 C -0.167 4.167 14 C 0.020 3.980 15 N -0.339 5.339 16 C -0.381 4.381 17 H 0.077 0.923 18 C -0.224 4.224 19 N -0.597 5.597 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.240 1.240 23 H -0.193 1.193 24 C -0.028 4.028 25 C 0.037 3.963 26 H 0.088 0.912 27 O -0.375 6.375 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 10.288 21.679 -7.981 25.289 hybrid contribution 0.192 -1.318 0.875 1.594 sum 10.480 20.361 -7.106 23.977 Atomic orbital electron populations 1.20220 0.87702 1.03107 1.03057 1.21638 0.97725 0.90336 1.07477 1.24373 0.78548 1.00740 1.05629 1.83739 1.30477 1.21376 1.71644 1.22873 0.96299 0.81188 1.00504 1.20534 0.90833 0.97517 1.04788 1.21087 0.94707 0.93314 1.17166 1.17562 0.75440 0.85309 0.83297 1.90773 1.53102 1.69104 1.32855 1.45865 1.68353 1.11370 1.08616 1.20744 0.94908 0.80996 0.97122 0.91296 1.22235 0.93999 0.97994 1.02466 1.21082 0.98392 0.90618 0.87954 1.44404 1.03424 1.59519 1.26540 1.18884 0.93699 1.08797 1.16759 0.92263 1.25851 1.01305 0.98067 0.97152 1.69943 1.43046 1.30005 1.16728 0.86017 0.80961 0.76889 0.79214 1.19268 1.23986 1.19283 1.22053 0.85221 0.95755 0.99737 1.22375 0.81721 0.95392 0.96784 0.91207 1.86413 1.20314 1.82293 1.48488 0.90147 0.88741 0.93537 0.73571 0.88912 0.87473 0.89729 0.75286 0.90943 0.90746 0.91208 0.95091 0.92766 0.91631 0.94863 0.75553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.38 71.24 0.74 -0.71 16 2 C -0.17 -3.50 6.38 -18.48 -0.12 -3.62 16 3 C -0.03 -0.43 11.96 66.89 0.80 0.37 16 4 O -0.18 -3.37 10.52 4.49 0.05 -3.33 16 5 C 0.04 0.94 7.37 25.26 0.19 1.13 16 6 C -0.08 -1.35 10.24 71.24 0.73 -0.62 16 7 C -0.26 -6.62 6.07 -18.99 -0.12 -6.73 16 8 C 0.60 18.42 7.22 86.65 0.63 19.05 16 9 O -0.58 -22.56 16.77 -4.07 -0.07 -22.62 16 10 N -0.69 -19.35 4.91 -445.73 -2.19 -21.54 16 11 C 0.17 5.44 2.12 45.02 0.10 5.53 16 12 H 0.07 2.58 7.57 -2.39 -0.02 2.57 16 13 C -0.13 -4.19 5.65 30.67 0.17 -4.02 16 14 C 0.14 5.64 6.52 86.36 0.56 6.20 16 15 N -0.61 -27.99 2.77 -699.05 -1.94 -29.93 16 16 C -0.25 -13.82 10.04 84.04 0.84 -12.97 16 17 H 0.06 3.53 8.05 -2.91 -0.02 3.51 16 18 C -0.03 -1.60 5.24 84.86 0.44 -1.16 16 19 N -0.95 -57.90 13.97 21.65 0.30 -57.60 16 20 Si 0.94 44.98 24.34 68.60 1.67 46.65 16 21 H -0.27 -11.60 6.70 99.48 0.67 -10.93 16 22 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 23 H -0.27 -12.66 6.45 99.48 0.64 -12.02 16 24 C 0.10 3.99 3.82 86.36 0.33 4.32 16 25 C 0.10 3.19 3.14 30.67 0.10 3.29 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 27 O -0.57 -15.78 13.16 -148.98 -1.96 -17.74 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.25 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.59 7.93 -2.39 -0.02 1.57 16 35 H 0.41 9.72 8.59 -92.71 -0.80 8.92 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 39 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.07 2.81 4.49 -2.39 -0.01 2.80 16 42 H 0.03 1.39 6.97 -2.39 -0.02 1.37 16 43 H 0.39 8.12 9.08 -74.06 -0.67 7.45 16 Total: -1.00 -73.60 353.15 0.73 -72.88 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.53 Total: 23.17 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.39 Total: 10.06 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -3.83 Total: -109.07 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.98 Total: -43.69 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.67 Total: 46.65 kcal Total: -73.60 0.73 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090237332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.098 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds