Wall clock time and date at job start Fri Apr 10 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47000 * 2 1 4 4 C 1.35141 * 125.60863 * 89.71981 * 3 2 1 5 5 C 1.40363 * 107.10997 * 180.25896 * 4 3 2 6 6 C 1.36541 * 106.71245 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.99168 * 180.02562 * 6 5 4 8 8 O 1.21694 * 119.99556 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99606 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46432 * 35.00351 * 10 9 7 12 12 C 1.53041 * 109.46105 * 275.02986 * 10 9 7 13 13 C 1.53165 * 109.32613 * 301.35838 * 12 10 9 14 14 N 1.46924 * 108.77160 * 305.35604 * 13 12 10 15 15 C 1.36932 * 120.63121 * 233.58621 * 14 13 12 16 16 H 1.08004 * 119.99949 * 27.69303 * 15 14 13 17 17 C 1.38812 * 120.00064 * 207.69057 * 15 14 13 18 18 N 1.31617 * 120.00278 * 17.36527 * 17 15 14 19 19 Si 1.86800 * 119.99818 * 197.36837 * 17 15 14 20 20 H 1.48503 * 109.47481 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47163 * 120.00110 * 19 17 15 22 22 H 1.48504 * 109.47288 * 239.99678 * 19 17 15 23 23 C 1.46929 * 118.73596 * 53.60789 * 14 13 12 24 24 C 1.53040 * 109.45917 * 154.97457 * 10 9 7 25 25 H 1.08999 * 109.49986 * 178.60440 * 24 10 9 26 26 O 1.42901 * 109.50185 * 298.70541 * 24 10 9 27 27 O 1.33923 * 125.62161 * 270.02809 * 3 2 1 28 28 H 1.09000 * 109.47306 * 299.99867 * 1 2 3 29 29 H 1.09008 * 109.47029 * 59.99232 * 1 2 3 30 30 H 1.09001 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47035 * 240.00862 * 2 1 3 32 32 H 1.08995 * 109.47038 * 120.00552 * 2 1 3 33 33 H 1.07998 * 126.44056 * 0.24788 * 4 3 2 34 34 H 1.08005 * 126.64295 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00432 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.49783 * 61.29877 * 12 10 9 37 37 H 1.09004 * 109.49787 * 181.39661 * 12 10 9 38 38 H 1.09000 * 109.59132 * 185.56705 * 13 12 10 39 39 H 1.09005 * 109.70489 * 65.21618 * 13 12 10 40 40 H 0.96997 * 120.00344 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58283 * 186.60388 * 23 14 13 42 42 H 1.09000 * 109.70413 * 66.25378 * 23 14 13 43 43 H 0.96693 * 114.00093 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2895 2.1645 1.0987 5 6 2.7295 3.4208 0.6533 6 6 2.7179 3.3797 -0.7114 7 6 3.1024 4.4733 -1.6099 8 8 3.4743 5.5366 -1.1495 9 7 3.0450 4.3001 -2.9452 10 6 3.4297 5.3923 -3.8426 11 1 4.2504 5.9554 -3.3984 12 6 2.2324 6.3208 -4.0582 13 6 1.0694 5.5191 -4.6504 14 7 1.5341 4.8415 -5.8684 15 6 0.8627 4.9955 -7.0519 16 1 0.3016 5.8988 -7.2408 17 6 0.9034 3.9908 -8.0088 18 7 1.2808 2.7758 -7.6717 19 14 0.4226 4.3632 -9.7750 20 1 0.0404 5.7933 -9.8931 21 1 1.5735 4.0834 -10.6708 22 1 -0.7276 3.5090 -10.1656 23 6 2.7326 3.9950 -5.7923 24 6 3.8771 4.8140 -5.1870 25 1 4.1399 5.6272 -5.8636 26 8 5.0139 3.9711 -4.9891 27 8 2.2918 2.1564 -1.0886 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.1774 1.8511 2.1261 34 1 3.0209 4.2578 1.2706 35 1 2.7489 3.4524 -3.3121 36 1 1.9287 6.7506 -3.1036 37 1 2.5107 7.1199 -4.7454 38 1 0.2492 6.1932 -4.8976 39 1 0.7280 4.7781 -3.9275 40 1 1.3088 2.0736 -8.3403 41 1 3.0099 3.6634 -6.7930 42 1 2.5309 3.1281 -5.1630 43 1 5.3517 3.5692 -5.8011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090364798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:51 Heat of formation + Delta-G solvation = -54.980050 kcal Electronic energy + Delta-G solvation = -26307.921704 eV Core-core repulsion = 22548.273527 eV Total energy + Delta-G solvation = -3759.648178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.67730 -39.70291 -37.80172 -35.30859 -34.44224 -34.12102 -32.83950 -32.01442 -29.98107 -29.05111 -28.48423 -25.46979 -24.40609 -22.63503 -22.13811 -21.71167 -21.34151 -20.18145 -18.74327 -18.29223 -16.97313 -16.57954 -16.38801 -15.81757 -15.35382 -15.00545 -14.61231 -14.53012 -14.29249 -13.88991 -13.70976 -13.39714 -13.21818 -13.17068 -12.94741 -12.66728 -12.53507 -12.29045 -11.87068 -11.76569 -11.69997 -11.25350 -11.10476 -11.05245 -10.86753 -10.45027 -10.22953 -10.02924 -10.02042 -10.01359 -9.61363 -9.35731 -8.82190 -8.59779 -8.40929 -6.80761 -5.90927 -3.34173 1.14371 2.33172 2.66908 3.29876 3.38896 3.40345 3.40973 3.46982 4.38202 4.46610 4.58130 4.80434 4.89484 5.00528 5.08288 5.23345 5.23979 5.37929 5.41676 5.55422 5.62393 5.65529 5.68730 5.80453 5.84851 5.89466 5.91118 6.01161 6.01457 6.21208 6.36387 6.39415 6.42142 6.68412 6.75187 6.86577 6.96261 7.04006 7.39267 7.69354 7.80462 8.08103 8.32025 8.36845 9.07391 9.70303 10.26112 11.17275 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.004177 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.135120 B = 6701.413271 C = 7710.588576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 C 0.019 3.981 4 C -0.224 4.224 5 C -0.126 4.126 6 C -0.069 4.069 7 C 0.600 3.400 8 O -0.534 6.534 9 N -0.691 5.691 10 C 0.164 3.836 11 H 0.082 0.918 12 C -0.145 4.145 13 C 0.144 3.856 14 N -0.587 5.587 15 C -0.254 4.254 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.145 3.855 24 C 0.067 3.933 25 H 0.064 0.936 26 O -0.573 6.573 27 O -0.156 6.156 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.093 0.907 42 H 0.025 0.975 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -3.875 13.535 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 C -0.033 4.033 4 C -0.243 4.243 5 C -0.146 4.146 6 C -0.122 4.122 7 C 0.386 3.614 8 O -0.413 6.413 9 N -0.341 5.341 10 C 0.059 3.941 11 H 0.100 0.900 12 C -0.185 4.185 13 C 0.018 3.982 14 N -0.312 5.312 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.018 3.982 24 C 0.006 3.994 25 H 0.082 0.918 26 O -0.377 6.377 27 O -0.052 6.052 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.043 0.957 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.588 -3.157 14.007 14.590 hybrid contribution -0.291 -0.440 -1.507 1.597 sum 2.297 -3.597 12.499 13.208 Atomic orbital electron populations 1.21802 0.93543 1.02558 1.02998 1.20191 0.96693 0.87148 1.04458 1.22826 1.01239 0.95110 0.84165 1.21520 1.08847 0.94356 0.99556 1.21876 1.01080 0.98767 0.92927 1.22201 1.09900 0.85386 0.94684 1.16545 0.78107 0.84930 0.81838 1.90832 1.48875 1.25313 1.76325 1.45935 1.65453 1.17971 1.04762 1.20910 0.96988 0.87512 0.88649 0.89995 1.22410 0.96755 0.98341 1.00998 1.20927 0.93893 0.94485 0.88919 1.43972 1.26868 1.55230 1.05094 1.19256 1.27513 0.99560 0.92057 0.91308 1.25052 1.00538 0.94524 0.99437 1.70028 1.51827 1.00101 1.32716 0.86215 0.77782 0.77884 0.84855 1.20166 1.21515 1.21655 1.21403 0.84534 0.90986 1.01245 1.22934 0.87451 0.93927 0.95092 0.91786 1.86416 1.47512 1.66677 1.37122 1.84065 1.64353 1.21902 1.34831 0.92148 0.91814 0.91429 0.89549 0.88652 0.82922 0.82421 0.75344 0.91581 0.90849 0.92360 0.96213 0.93562 0.88847 0.95749 0.77670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.42 6.47 -27.88 -0.18 -0.60 16 3 C 0.02 0.24 6.57 -35.41 -0.23 0.01 16 4 C -0.22 -2.60 10.77 -39.88 -0.43 -3.03 16 5 C -0.13 -1.75 10.62 -39.40 -0.42 -2.17 16 6 C -0.07 -1.13 7.13 -36.80 -0.26 -1.39 16 7 C 0.60 10.90 7.75 -12.86 -0.10 10.80 16 8 O -0.53 -10.68 16.53 5.19 0.09 -10.59 16 9 N -0.69 -12.54 4.15 -55.08 -0.23 -12.77 16 10 C 0.16 3.00 2.47 -67.89 -0.17 2.83 16 11 H 0.08 1.54 7.57 -51.93 -0.39 1.14 16 12 C -0.14 -2.62 5.77 -26.62 -0.15 -2.77 16 13 C 0.14 2.98 6.25 -3.73 -0.02 2.95 16 14 N -0.59 -13.95 2.99 -172.33 -0.52 -14.47 16 15 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 16 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 17 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -24.91 11.19 55.49 0.62 -24.29 16 19 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.15 3.22 4.64 -3.71 -0.02 3.20 16 24 C 0.07 1.25 3.36 -26.61 -0.09 1.16 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 O -0.57 -9.92 13.21 -35.23 -0.47 -10.39 16 27 O -0.16 -2.41 10.40 5.00 0.05 -2.36 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.41 7.64 6.62 -40.82 -0.27 7.37 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 42 H 0.02 0.58 6.65 -51.93 -0.35 0.23 16 43 H 0.38 5.20 9.08 45.56 0.41 5.61 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -30.83 354.65 -7.57 -38.41 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.50 Total: 12.00 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.94 Total: 3.28 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.12 Total: -51.53 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.33 Total: -23.34 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.83 -7.57 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090364798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.575 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds