Wall clock time and date at job start Fri Apr 10 2020 17:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47000 * 2 1 4 4 C 1.35141 * 125.60863 * 89.71981 * 3 2 1 5 5 C 1.40363 * 107.10997 * 180.25896 * 4 3 2 6 6 C 1.36541 * 106.71245 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.99168 * 180.02562 * 6 5 4 8 8 O 1.21694 * 119.99556 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99606 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46432 * 35.00351 * 10 9 7 12 12 C 1.53041 * 109.46105 * 275.02986 * 10 9 7 13 13 C 1.53165 * 109.32613 * 301.35838 * 12 10 9 14 14 N 1.46924 * 108.77160 * 305.35604 * 13 12 10 15 15 C 1.36932 * 120.63121 * 233.58621 * 14 13 12 16 16 H 1.08004 * 119.99949 * 27.69303 * 15 14 13 17 17 C 1.38812 * 120.00064 * 207.69057 * 15 14 13 18 18 N 1.31617 * 120.00278 * 17.36527 * 17 15 14 19 19 Si 1.86800 * 119.99818 * 197.36837 * 17 15 14 20 20 H 1.48503 * 109.47481 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47163 * 120.00110 * 19 17 15 22 22 H 1.48504 * 109.47288 * 239.99678 * 19 17 15 23 23 C 1.46929 * 118.73596 * 53.60789 * 14 13 12 24 24 C 1.53040 * 109.45917 * 154.97457 * 10 9 7 25 25 H 1.08999 * 109.49986 * 178.60440 * 24 10 9 26 26 O 1.42901 * 109.50185 * 298.70541 * 24 10 9 27 27 O 1.33923 * 125.62161 * 270.02809 * 3 2 1 28 28 H 1.09000 * 109.47306 * 299.99867 * 1 2 3 29 29 H 1.09008 * 109.47029 * 59.99232 * 1 2 3 30 30 H 1.09001 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47035 * 240.00862 * 2 1 3 32 32 H 1.08995 * 109.47038 * 120.00552 * 2 1 3 33 33 H 1.07998 * 126.44056 * 0.24788 * 4 3 2 34 34 H 1.08005 * 126.64295 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00432 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.49783 * 61.29877 * 12 10 9 37 37 H 1.09004 * 109.49787 * 181.39661 * 12 10 9 38 38 H 1.09000 * 109.59132 * 185.56705 * 13 12 10 39 39 H 1.09005 * 109.70489 * 65.21618 * 13 12 10 40 40 H 0.96997 * 120.00344 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58283 * 186.60388 * 23 14 13 42 42 H 1.09000 * 109.70413 * 66.25378 * 23 14 13 43 43 H 0.96693 * 114.00093 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2895 2.1645 1.0987 5 6 2.7295 3.4208 0.6533 6 6 2.7179 3.3797 -0.7114 7 6 3.1024 4.4733 -1.6099 8 8 3.4743 5.5366 -1.1495 9 7 3.0450 4.3001 -2.9452 10 6 3.4297 5.3923 -3.8426 11 1 4.2504 5.9554 -3.3984 12 6 2.2324 6.3208 -4.0582 13 6 1.0694 5.5191 -4.6504 14 7 1.5341 4.8415 -5.8684 15 6 0.8627 4.9955 -7.0519 16 1 0.3016 5.8988 -7.2408 17 6 0.9034 3.9908 -8.0088 18 7 1.2808 2.7758 -7.6717 19 14 0.4226 4.3632 -9.7750 20 1 0.0404 5.7933 -9.8931 21 1 1.5735 4.0834 -10.6708 22 1 -0.7276 3.5090 -10.1656 23 6 2.7326 3.9950 -5.7923 24 6 3.8771 4.8140 -5.1870 25 1 4.1399 5.6272 -5.8636 26 8 5.0139 3.9711 -4.9891 27 8 2.2918 2.1564 -1.0886 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.1774 1.8511 2.1261 34 1 3.0209 4.2578 1.2706 35 1 2.7489 3.4524 -3.3121 36 1 1.9287 6.7506 -3.1036 37 1 2.5107 7.1199 -4.7454 38 1 0.2492 6.1932 -4.8976 39 1 0.7280 4.7781 -3.9275 40 1 1.3088 2.0736 -8.3403 41 1 3.0099 3.6634 -6.7930 42 1 2.5309 3.1281 -5.1630 43 1 5.3517 3.5692 -5.8011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090364798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:50 Heat of formation + Delta-G solvation = -76.421531 kcal Electronic energy + Delta-G solvation = -26308.851476 eV Core-core repulsion = 22548.273527 eV Total energy + Delta-G solvation = -3760.577950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.74399 -41.17726 -39.33886 -36.89708 -35.81641 -35.18015 -33.89751 -33.73453 -31.62356 -30.62557 -29.67333 -27.26807 -25.45260 -24.11707 -23.58982 -23.18286 -22.43491 -21.32030 -20.32541 -19.57685 -18.78143 -18.12348 -17.51005 -17.11758 -16.78268 -16.62394 -16.02857 -15.87080 -15.52325 -15.39293 -15.18288 -14.98605 -14.53643 -14.14595 -14.00273 -13.92575 -13.89834 -13.57659 -13.32133 -13.24834 -12.90157 -12.73504 -12.69515 -12.47073 -12.16164 -12.02545 -11.93613 -11.85206 -11.48531 -11.23807 -11.04594 -10.96770 -10.61519 -10.22587 -9.50426 -8.74295 -7.91373 -5.37542 -0.01245 1.33902 1.46266 1.49849 1.59427 1.60165 2.09118 2.15576 2.48934 3.10029 3.25132 3.51487 3.61752 3.81381 3.92301 3.94610 4.09190 4.22600 4.23617 4.32537 4.32760 4.42001 4.50070 4.58781 4.66004 4.81129 4.84590 4.90694 4.94868 5.00483 5.03160 5.04785 5.12408 5.26090 5.32357 5.39349 5.46070 5.55635 5.63953 5.87667 6.32792 6.39152 6.79723 6.95569 7.10029 7.77331 8.29807 9.14795 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.004177 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.135120 B = 6701.413271 C = 7710.588576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C 0.020 3.980 4 C -0.219 4.219 5 C -0.115 4.115 6 C -0.112 4.112 7 C 0.600 3.400 8 O -0.559 6.559 9 N -0.693 5.693 10 C 0.165 3.835 11 H 0.083 0.917 12 C -0.131 4.131 13 C 0.145 3.855 14 N -0.601 5.601 15 C -0.266 4.266 16 H 0.070 0.930 17 C -0.043 4.043 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.294 1.294 23 C 0.158 3.842 24 C 0.084 3.916 25 H 0.071 0.929 26 O -0.575 6.575 27 O -0.178 6.178 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.005 0.995 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -4.204 14.832 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.033 4.033 4 C -0.238 4.238 5 C -0.136 4.136 6 C -0.163 4.163 7 C 0.387 3.613 8 O -0.441 6.441 9 N -0.342 5.342 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.171 4.171 13 C 0.020 3.980 14 N -0.326 5.326 15 C -0.395 4.395 16 H 0.087 0.913 17 C -0.239 4.239 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.222 1.222 23 C 0.031 3.969 24 C 0.023 3.977 25 H 0.088 0.912 26 O -0.381 6.381 27 O -0.075 6.075 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.207 0.793 34 H 0.186 0.814 35 H 0.242 0.758 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.628 -3.475 15.310 15.918 hybrid contribution -0.339 -0.441 -1.814 1.897 sum 2.289 -3.916 13.496 14.237 Atomic orbital electron populations 1.21802 0.93179 1.03668 1.02085 1.20445 0.96856 0.85094 1.06078 1.23714 0.99640 0.96222 0.83675 1.21919 1.07803 0.92972 1.01079 1.22213 0.99314 0.99958 0.92110 1.21948 1.13385 0.85825 0.95141 1.16782 0.77405 0.85284 0.81786 1.90796 1.50203 1.26439 1.76661 1.45924 1.65615 1.17635 1.05014 1.20889 0.97049 0.87646 0.88403 0.89896 1.22264 0.95506 0.98035 1.01328 1.20971 0.95053 0.94278 0.87731 1.44178 1.27445 1.55501 1.05469 1.19551 1.27397 0.99503 0.93092 0.91279 1.25737 1.01075 0.94355 1.02755 1.70164 1.53172 1.00803 1.33540 0.85240 0.77030 0.77859 0.80474 1.19218 1.21481 1.22152 1.21190 0.85355 0.90805 0.99526 1.22610 0.86493 0.93425 0.95154 0.91160 1.86398 1.46673 1.66621 1.38457 1.84046 1.64978 1.21992 1.36478 0.91407 0.94366 0.89342 0.89710 0.85221 0.79255 0.81416 0.75833 0.90788 0.89785 0.92159 0.97224 0.93931 0.91424 0.97747 0.75844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.89 71.98 0.71 -1.48 16 2 C -0.05 -0.72 6.47 29.85 0.19 -0.53 16 3 C 0.02 0.46 6.57 24.97 0.16 0.62 16 4 C -0.22 -4.53 10.77 22.07 0.24 -4.29 16 5 C -0.12 -3.06 10.62 22.39 0.24 -2.83 16 6 C -0.11 -3.63 7.13 24.07 0.17 -3.46 16 7 C 0.60 22.09 7.75 86.44 0.67 22.76 16 8 O -0.56 -22.48 16.53 -4.33 -0.07 -22.55 16 9 N -0.69 -25.58 4.15 -446.40 -1.85 -27.44 16 10 C 0.16 6.01 2.47 45.02 0.11 6.12 16 11 H 0.08 3.06 7.57 -2.39 -0.02 3.04 16 12 C -0.13 -4.68 5.77 30.66 0.18 -4.51 16 13 C 0.15 6.04 6.25 86.35 0.54 6.58 16 14 N -0.60 -28.90 2.99 -699.13 -2.09 -30.99 16 15 C -0.27 -14.01 9.58 84.03 0.81 -13.20 16 16 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 17 C -0.04 -2.31 4.91 84.86 0.42 -1.89 16 18 N -0.93 -52.39 11.19 21.65 0.24 -52.14 16 19 Si 0.97 43.10 29.59 68.60 2.03 45.13 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 C 0.16 7.14 4.64 86.36 0.40 7.54 16 24 C 0.08 3.13 3.36 30.67 0.10 3.23 16 25 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 26 O -0.57 -19.66 13.21 -148.98 -1.97 -21.63 16 27 O -0.18 -5.54 10.40 -5.02 -0.05 -5.60 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.41 15.67 6.62 -92.71 -0.61 15.06 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 38 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 39 H 0.01 0.43 7.75 -2.38 -0.02 0.41 16 40 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 41 H 0.07 3.42 6.04 -2.38 -0.01 3.40 16 42 H 0.00 0.22 6.65 -2.39 -0.02 0.21 16 43 H 0.39 10.60 9.08 -74.06 -0.67 9.93 16 Total: -1.00 -66.76 354.65 0.92 -65.84 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.25 Total: 34.72 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 4.94 Total: 14.66 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.71 Total: -110.57 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -2.09 Total: -49.78 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.76 0.92 -65.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090364798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.587 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds