Wall clock time and date at job start Fri Apr 10 2020 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 5 5 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 6 6 N 1.46497 * 109.47081 * 295.00160 * 3 2 1 7 7 C 1.34777 * 120.00376 * 155.00022 * 6 3 2 8 8 O 1.21383 * 119.99940 * 359.97438 * 7 6 3 9 9 C 1.49240 * 120.00010 * 179.97438 * 7 6 3 10 10 O 1.21749 * 120.00409 * 0.02562 * 9 7 6 11 11 N 1.33173 * 120.00102 * 179.97438 * 9 7 6 12 12 C 1.33380 * 120.00027 * 180.02562 * 11 9 7 13 13 C 1.40852 * 126.35592 * 0.02786 * 12 11 9 14 14 C 1.35297 * 108.22748 * 180.02562 * 13 12 11 15 15 C 1.50701 * 125.56430 * 179.97438 * 14 13 12 16 16 N 1.36227 * 108.87978 * 359.97438 * 14 13 12 17 17 C 1.46496 * 125.86122 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47431 * 85.00101 * 17 16 14 19 19 H 1.08001 * 119.99781 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00291 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99770 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47052 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47367 * 210.00163 * 22 20 18 25 25 H 1.48503 * 109.46942 * 330.00249 * 22 20 18 26 26 N 1.37281 * 126.34765 * 179.71921 * 12 11 9 27 27 H 0.96996 * 126.34270 * 359.97438 * 26 12 11 28 28 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 29 29 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 30 30 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 32 32 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 35 35 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 36 36 H 0.97006 * 119.99921 * 334.99446 * 6 3 2 37 37 H 1.08003 * 125.88315 * 0.02562 * 13 12 11 38 38 H 1.09008 * 109.46492 * 89.97117 * 15 14 13 39 39 H 1.08994 * 109.47305 * 209.97224 * 15 14 13 40 40 H 1.08997 * 109.46526 * 329.97862 * 15 14 13 41 41 H 1.09006 * 109.47349 * 205.00073 * 17 16 14 42 42 H 1.09003 * 109.47272 * 324.99961 * 17 16 14 43 43 H 0.97007 * 119.99770 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4441 0.1257 6 7 1.6526 2.0974 -1.2518 7 6 1.5259 3.4383 -1.2996 8 8 1.7324 4.1033 -0.3054 9 6 1.1316 4.1056 -2.5750 10 8 0.9240 3.4386 -3.5722 11 7 1.0059 5.4305 -2.6222 12 6 0.6531 6.0268 -3.7619 13 6 0.3821 5.3896 -4.9885 14 6 0.0611 6.3395 -5.8969 15 6 -0.2989 6.0876 -7.3385 16 7 0.1164 7.5608 -5.2960 17 6 -0.1635 8.8470 -5.9389 18 6 -1.6463 9.1137 -5.9048 19 1 -2.3135 8.3965 -5.4500 20 6 -2.1511 10.2732 -6.4540 21 7 -1.3386 11.1463 -7.0082 22 14 -3.9892 10.6034 -6.4123 23 1 -4.3320 11.3379 -5.1681 24 1 -4.3722 11.4211 -7.5912 25 1 -4.7246 9.3136 -6.4443 26 7 0.4810 7.3749 -3.9555 27 1 0.5931 8.0703 -3.2887 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.9995 0.9050 -0.7160 34 1 3.8532 0.9568 1.0572 35 1 3.9284 2.4718 0.1253 36 1 1.4872 1.5660 -2.0463 37 1 0.4234 4.3261 -5.1721 38 1 -1.3758 5.9423 -7.4239 39 1 0.0014 6.9435 -7.9429 40 1 0.2173 5.1947 -7.6911 41 1 0.3608 9.6409 -5.4068 42 1 0.1766 8.8175 -6.9741 43 1 -1.6938 11.9619 -7.3950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349074271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:14 Heat of formation + Delta-G solvation = 15.459195 kcal Electronic energy + Delta-G solvation = -24843.618962 eV Core-core repulsion = 21119.318010 eV Total energy + Delta-G solvation = -3724.300952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12483 -39.82851 -37.97470 -36.29468 -34.50574 -33.27315 -32.50256 -32.01556 -30.79362 -29.89666 -27.67801 -27.11015 -25.05921 -23.81586 -22.97935 -21.57956 -20.59617 -19.84401 -19.44314 -17.34736 -16.98137 -16.79358 -16.40740 -15.57635 -15.27429 -15.08021 -14.83187 -14.28490 -14.17205 -13.99323 -13.91700 -13.49614 -13.11376 -13.05169 -12.95068 -12.77852 -12.52601 -12.27113 -12.17184 -11.92660 -11.90461 -11.47135 -11.40168 -11.24639 -11.10821 -10.85743 -10.77837 -10.55971 -10.45301 -9.56791 -9.09312 -8.99243 -8.97947 -8.97022 -8.45939 -7.13767 -6.57452 -4.72304 1.29125 1.86265 2.36532 3.02227 3.10562 3.12081 3.14916 3.21068 4.00397 4.17992 4.50177 4.54123 4.75145 4.82506 4.87760 4.89745 4.93846 5.28393 5.42161 5.42677 5.46838 5.61313 5.64769 5.75127 5.75393 5.76575 5.96321 5.99109 6.03260 6.06600 6.15769 6.21542 6.39017 6.51139 6.58917 6.62128 7.27157 7.33140 7.43309 7.44604 7.59095 7.79045 8.02876 8.35363 8.40814 8.98672 9.14545 10.46535 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.002555 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.646530 B =10955.638289 C =11028.462071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.139 3.861 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.712 5.712 7 C 0.526 3.474 8 O -0.511 6.511 9 C 0.485 3.515 10 O -0.576 6.576 11 N -0.665 5.665 12 C 0.466 3.534 13 C -0.330 4.330 14 C 0.192 3.808 15 C -0.094 4.094 16 N -0.329 5.329 17 C 0.251 3.749 18 C -0.558 4.558 19 H 0.070 0.930 20 C 0.072 3.928 21 N -0.885 5.885 22 Si 0.910 3.090 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.269 1.269 26 N -0.458 5.458 27 H 0.448 0.552 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.407 0.593 37 H 0.186 0.814 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -15.090 4.288 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.035 3.965 4 H 0.106 0.894 5 C -0.223 4.223 6 N -0.367 5.367 7 C 0.308 3.692 8 O -0.385 6.385 9 C 0.265 3.735 10 O -0.459 6.459 11 N -0.430 5.430 12 C 0.219 3.781 13 C -0.361 4.361 14 C 0.064 3.936 15 C -0.152 4.152 16 N -0.114 5.114 17 C 0.135 3.865 18 C -0.596 4.596 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.736 3.264 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.194 1.194 26 N -0.179 5.179 27 H 0.296 0.704 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.243 0.757 37 H 0.203 0.797 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.796 -13.931 5.087 15.587 hybrid contribution -1.081 0.193 -0.448 1.186 sum 3.715 -13.739 4.640 14.969 Atomic orbital electron populations 1.21791 0.95277 1.01592 1.02578 1.21824 0.96670 0.95365 1.02908 1.21013 0.94916 0.92979 0.87607 0.89395 1.22191 0.95464 1.02828 1.01769 1.45899 1.70266 1.06800 1.13773 1.20064 0.77607 0.82182 0.89385 1.90673 1.47511 1.64151 1.36131 1.20270 0.79481 0.86557 0.87223 1.90595 1.50203 1.68984 1.36085 1.68683 1.39885 1.11364 1.23107 1.19105 0.85693 0.82135 0.91200 1.22302 1.20049 1.01783 0.92010 1.21468 0.92213 0.83588 0.96359 1.20627 1.03497 1.03455 0.87617 1.48057 1.57330 1.09303 0.96733 1.20147 0.98379 0.74589 0.93414 1.21341 0.90742 1.06294 1.41239 0.91200 1.24943 0.99423 0.95066 0.93944 1.69893 1.35563 1.10195 1.36507 0.86284 0.83241 0.78774 0.78089 1.20142 1.20619 1.19388 1.44593 1.63631 1.07507 1.02170 0.70365 0.92591 0.92221 0.92632 0.91322 0.90495 0.92449 0.91756 0.91886 0.75732 0.79734 0.88916 0.89929 0.89353 0.92843 0.91147 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.80 37.16 0.36 -0.98 16 2 C -0.13 -1.05 5.47 -26.74 -0.15 -1.20 16 3 C 0.14 1.54 2.57 -67.94 -0.17 1.37 16 4 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 5 C -0.16 -1.67 9.48 37.16 0.35 -1.31 16 6 N -0.71 -9.73 4.52 -54.31 -0.25 -9.98 16 7 C 0.53 9.56 7.85 -11.68 -0.09 9.46 16 8 O -0.51 -10.57 16.57 5.47 0.09 -10.48 16 9 C 0.48 9.78 7.77 -12.40 -0.10 9.68 16 10 O -0.58 -11.54 13.39 5.14 0.07 -11.47 16 11 N -0.66 -14.07 10.33 -11.99 -0.12 -14.20 16 12 C 0.47 9.23 8.07 -155.17 -1.25 7.98 16 13 C -0.33 -6.07 9.41 -39.64 -0.37 -6.45 16 14 C 0.19 3.26 6.93 -81.69 -0.57 2.70 16 15 C -0.09 -1.22 10.09 36.01 0.36 -0.86 16 16 N -0.33 -6.09 3.63 -58.01 -0.21 -6.30 16 17 C 0.25 5.11 5.93 -5.20 -0.03 5.08 16 18 C -0.56 -12.92 9.39 -34.44 -0.32 -13.24 16 19 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 20 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -21.96 13.29 55.43 0.74 -21.22 16 22 Si 0.91 18.89 29.54 -169.99 -5.02 13.87 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 N -0.46 -8.34 7.37 31.31 0.23 -8.11 16 27 H 0.45 7.27 8.96 -182.56 -1.64 5.63 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.41 5.07 8.07 -40.82 -0.33 4.74 16 37 H 0.19 3.43 5.77 -52.48 -0.30 3.13 16 38 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 39 H 0.08 1.06 7.14 -51.93 -0.37 0.69 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.43 7.18 -51.93 -0.37 1.06 16 43 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -29.59 368.17 -8.58 -38.16 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.58 Total: 10.33 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -2.07 Total: 13.84 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.39 Total: -59.81 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.16 Total: -21.95 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.59 -8.58 -38.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349074271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.624 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds