Wall clock time and date at job start Fri Apr 10 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47085 * 2 1 4 4 C 1.52999 * 109.47085 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.34770 * 119.99846 * 179.97438 * 5 4 3 7 7 O 1.21383 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.49245 * 119.99701 * 180.02562 * 6 5 4 9 9 O 1.21745 * 120.00110 * 0.02562 * 8 6 5 10 10 N 1.33175 * 119.99764 * 180.02562 * 8 6 5 11 11 C 1.33381 * 119.99617 * 179.97438 * 10 8 6 12 12 C 1.40854 * 126.35430 * 359.97438 * 11 10 8 13 13 C 1.35305 * 108.22149 * 179.97438 * 12 11 10 14 14 C 1.50704 * 125.55876 * 179.97438 * 13 12 11 15 15 N 1.36218 * 108.88469 * 0.02562 * 13 12 11 16 16 C 1.46500 * 125.86296 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46949 * 84.99702 * 16 15 13 18 18 H 1.07995 * 120.00167 * 359.72205 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 N 1.37290 * 126.35007 * 180.24539 * 11 10 8 26 26 H 0.96996 * 126.33694 * 0.03016 * 25 11 10 27 27 H 1.09000 * 109.47434 * 60.00581 * 1 2 3 28 28 H 1.09000 * 109.47528 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47549 * 300.00057 * 1 2 3 30 30 H 1.08990 * 109.47220 * 239.99892 * 2 1 3 31 31 H 1.09003 * 109.46947 * 119.99569 * 2 1 3 32 32 H 1.08998 * 109.46938 * 59.99269 * 3 2 1 33 33 H 1.09000 * 109.46510 * 299.99985 * 3 2 1 34 34 H 1.08996 * 109.47446 * 59.99472 * 4 3 2 35 35 H 1.09003 * 109.46947 * 299.99569 * 4 3 2 36 36 H 0.97007 * 119.99964 * 359.97438 * 5 4 3 37 37 H 1.07992 * 125.89132 * 359.96221 * 12 11 10 38 38 H 1.09003 * 109.46787 * 270.02759 * 14 13 12 39 39 H 1.09004 * 109.46947 * 30.01841 * 14 13 12 40 40 H 1.08997 * 109.47226 * 150.02283 * 14 13 12 41 41 H 1.09000 * 109.47175 * 324.99728 * 16 15 13 42 42 H 1.09001 * 109.47297 * 204.99235 * 16 15 13 43 43 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0700 0.0010 7 8 6.1721 2.1474 0.0018 8 6 5.8807 4.4771 0.0009 9 8 5.0896 5.4025 0.0005 10 7 7.1901 4.7205 0.0013 11 6 7.6346 5.9780 0.0008 12 6 6.8433 7.1433 -0.0008 13 6 7.6689 8.2153 -0.0003 14 6 7.2323 9.6577 -0.0021 15 7 8.9590 7.7782 0.0009 16 6 10.1529 8.6273 0.0012 17 6 10.4894 9.0203 1.4167 18 1 9.8728 8.6761 2.2338 19 6 11.5815 9.8236 1.6679 20 7 12.3292 10.2472 0.6723 21 14 11.9990 10.3102 3.4224 22 1 11.0096 9.7084 4.3518 23 1 13.3592 9.8203 3.7616 24 1 11.9599 11.7894 3.5485 25 7 8.9483 6.3767 -0.0037 26 1 9.7252 5.7959 -0.0074 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8890 35 1 3.9329 0.9289 0.8909 36 1 3.4279 3.5611 -0.0011 37 1 5.7639 7.1756 -0.0023 38 1 7.1282 10.0045 -1.0302 39 1 6.2745 9.7480 0.5105 40 1 7.9782 10.2637 0.5121 41 1 9.9615 9.5235 -0.5890 42 1 10.9892 8.0786 -0.4320 43 1 13.0972 10.8127 0.8491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349087263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:18 Heat of formation + Delta-G solvation = 10.789929 kcal Electronic energy + Delta-G solvation = -24257.865901 eV Core-core repulsion = 20533.362475 eV Total energy + Delta-G solvation = -3724.503426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12418 -39.69540 -37.84149 -36.22821 -34.54518 -33.71527 -33.17392 -32.35743 -30.79968 -29.23957 -27.66814 -27.10267 -25.12831 -23.47625 -22.65316 -21.54182 -21.07810 -19.82075 -19.31317 -17.37045 -16.99112 -16.73002 -16.23718 -16.12131 -15.24355 -15.20664 -15.06181 -14.77693 -14.29001 -14.04659 -13.79766 -13.76649 -13.06312 -12.95559 -12.91279 -12.84177 -12.60045 -12.42170 -12.17160 -11.92380 -11.72874 -11.43753 -11.40502 -11.39121 -11.13599 -10.91967 -10.82136 -10.56248 -10.43422 -9.55745 -9.10711 -8.99822 -8.98703 -8.98464 -8.47015 -7.14070 -6.57955 -4.72869 1.28545 1.86289 2.35522 3.00625 3.10475 3.11072 3.15695 3.20266 4.00199 4.17549 4.49691 4.56691 4.64996 4.69946 4.75090 4.88696 4.91571 5.10393 5.26833 5.37737 5.44972 5.49286 5.60351 5.63530 5.70761 5.75218 5.81598 5.96382 5.97586 6.01832 6.05149 6.25626 6.38790 6.49195 6.50186 6.62488 7.27066 7.32997 7.42803 7.43842 7.56149 7.78735 8.01943 8.35134 8.38651 8.98294 9.13773 10.45972 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.002210 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.511407 B =12664.448976 C =12849.575267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.119 3.881 5 N -0.719 5.719 6 C 0.524 3.476 7 O -0.511 6.511 8 C 0.485 3.515 9 O -0.576 6.576 10 N -0.665 5.665 11 C 0.466 3.534 12 C -0.330 4.330 13 C 0.193 3.807 14 C -0.100 4.100 15 N -0.329 5.329 16 C 0.250 3.750 17 C -0.558 4.558 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.884 5.884 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.278 1.278 25 N -0.458 5.458 26 H 0.448 0.552 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.408 0.592 37 H 0.186 0.814 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.616 -7.741 -2.527 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C -0.005 4.005 5 N -0.375 5.375 6 C 0.306 3.694 7 O -0.384 6.384 8 C 0.265 3.735 9 O -0.459 6.459 10 N -0.430 5.430 11 C 0.219 3.781 12 C -0.361 4.361 13 C 0.064 3.936 14 C -0.158 4.158 15 N -0.114 5.114 16 C 0.134 3.866 17 C -0.597 4.597 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.521 5.521 21 Si 0.736 3.264 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.203 1.203 25 N -0.179 5.179 26 H 0.296 0.704 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.244 0.756 37 H 0.203 0.797 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.361 -8.413 -2.583 16.844 hybrid contribution 0.162 0.725 0.916 1.179 sum -14.199 -7.689 -1.668 16.233 Atomic orbital electron populations 1.21766 0.95582 1.01677 1.01935 1.21436 0.96017 0.95991 1.02530 1.21840 0.94197 0.97956 1.03043 1.21375 0.93622 0.83042 1.02435 1.45814 1.07204 1.08952 1.75492 1.20081 0.82170 0.90279 0.76910 1.90680 1.55381 1.45935 1.46445 1.20234 0.86193 0.88231 0.78803 1.90594 1.60461 1.45132 1.49676 1.68678 1.16551 1.15537 1.42275 1.19102 0.82341 0.91400 0.85276 1.22312 1.02197 0.89261 1.22375 1.21467 0.82490 0.97704 0.91921 1.20684 1.03164 0.88147 1.03822 1.48059 1.08521 0.92748 1.62055 1.20160 0.78501 0.88074 0.99851 1.21392 1.13360 1.33401 0.91497 0.91097 1.24949 0.95070 0.94822 0.98552 1.69901 1.16952 1.33783 1.31449 0.86237 0.78700 0.78552 0.82930 1.19347 1.20451 1.20337 1.44602 1.07923 0.96459 1.68915 0.70358 0.92665 0.92687 0.92663 0.91644 0.91637 0.91125 0.91131 0.91483 0.91468 0.75605 0.79734 0.89616 0.89128 0.88835 0.91145 0.92815 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.13 -1.04 5.33 -26.73 -0.14 -1.18 16 4 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 5 N -0.72 -9.98 5.55 -60.80 -0.34 -10.32 16 6 C 0.52 9.69 7.88 -11.69 -0.09 9.59 16 7 O -0.51 -10.77 16.91 5.47 0.09 -10.68 16 8 C 0.49 9.87 7.77 -12.39 -0.10 9.78 16 9 O -0.58 -11.60 13.39 5.15 0.07 -11.54 16 10 N -0.66 -14.15 10.33 -11.99 -0.12 -14.28 16 11 C 0.47 9.26 8.07 -155.16 -1.25 8.01 16 12 C -0.33 -6.09 9.41 -39.64 -0.37 -6.46 16 13 C 0.19 3.27 6.93 -81.69 -0.57 2.71 16 14 C -0.10 -1.30 9.92 36.01 0.36 -0.94 16 15 N -0.33 -6.07 3.63 -58.01 -0.21 -6.28 16 16 C 0.25 5.09 5.71 -5.19 -0.03 5.06 16 17 C -0.56 -12.90 9.39 -34.44 -0.32 -13.22 16 18 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.88 -21.88 13.29 55.43 0.74 -21.14 16 21 Si 0.91 18.86 29.54 -169.99 -5.02 13.84 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 N -0.46 -8.34 7.37 31.31 0.23 -8.11 16 26 H 0.45 7.25 8.96 -182.56 -1.64 5.62 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 5.06 7.94 -40.82 -0.32 4.74 16 37 H 0.19 3.44 5.77 -52.49 -0.30 3.13 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.32 7.80 -51.93 -0.40 0.91 16 41 H 0.07 1.43 7.88 -51.93 -0.41 1.02 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -29.89 370.88 -9.10 -38.99 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.70 Total: 9.21 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: -2.43 Total: 14.70 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.89 -9.10 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349087263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.783 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds