Wall clock time and date at job start Fri Apr 10 2020 17:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47085 * 2 1 4 4 C 1.52999 * 109.47085 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.34770 * 119.99846 * 179.97438 * 5 4 3 7 7 O 1.21383 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.49245 * 119.99701 * 180.02562 * 6 5 4 9 9 O 1.21745 * 120.00110 * 0.02562 * 8 6 5 10 10 N 1.33175 * 119.99764 * 180.02562 * 8 6 5 11 11 C 1.33381 * 119.99617 * 179.97438 * 10 8 6 12 12 C 1.40854 * 126.35430 * 359.97438 * 11 10 8 13 13 C 1.35305 * 108.22149 * 179.97438 * 12 11 10 14 14 C 1.50704 * 125.55876 * 179.97438 * 13 12 11 15 15 N 1.36218 * 108.88469 * 0.02562 * 13 12 11 16 16 C 1.46500 * 125.86296 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46949 * 84.99702 * 16 15 13 18 18 H 1.07995 * 120.00167 * 359.72205 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 N 1.37290 * 126.35007 * 180.24539 * 11 10 8 26 26 H 0.96996 * 126.33694 * 0.03016 * 25 11 10 27 27 H 1.09000 * 109.47434 * 60.00581 * 1 2 3 28 28 H 1.09000 * 109.47528 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47549 * 300.00057 * 1 2 3 30 30 H 1.08990 * 109.47220 * 239.99892 * 2 1 3 31 31 H 1.09003 * 109.46947 * 119.99569 * 2 1 3 32 32 H 1.08998 * 109.46938 * 59.99269 * 3 2 1 33 33 H 1.09000 * 109.46510 * 299.99985 * 3 2 1 34 34 H 1.08996 * 109.47446 * 59.99472 * 4 3 2 35 35 H 1.09003 * 109.46947 * 299.99569 * 4 3 2 36 36 H 0.97007 * 119.99964 * 359.97438 * 5 4 3 37 37 H 1.07992 * 125.89132 * 359.96221 * 12 11 10 38 38 H 1.09003 * 109.46787 * 270.02759 * 14 13 12 39 39 H 1.09004 * 109.46947 * 30.01841 * 14 13 12 40 40 H 1.08997 * 109.47226 * 150.02283 * 14 13 12 41 41 H 1.09000 * 109.47175 * 324.99728 * 16 15 13 42 42 H 1.09001 * 109.47297 * 204.99235 * 16 15 13 43 43 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0700 0.0010 7 8 6.1721 2.1474 0.0018 8 6 5.8807 4.4771 0.0009 9 8 5.0896 5.4025 0.0005 10 7 7.1901 4.7205 0.0013 11 6 7.6346 5.9780 0.0008 12 6 6.8433 7.1433 -0.0008 13 6 7.6689 8.2153 -0.0003 14 6 7.2323 9.6577 -0.0021 15 7 8.9590 7.7782 0.0009 16 6 10.1529 8.6273 0.0012 17 6 10.4894 9.0203 1.4167 18 1 9.8728 8.6761 2.2338 19 6 11.5815 9.8236 1.6679 20 7 12.3292 10.2472 0.6723 21 14 11.9990 10.3102 3.4224 22 1 11.0096 9.7084 4.3518 23 1 13.3592 9.8203 3.7616 24 1 11.9599 11.7894 3.5485 25 7 8.9483 6.3767 -0.0037 26 1 9.7252 5.7959 -0.0074 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8890 35 1 3.9329 0.9289 0.8909 36 1 3.4279 3.5611 -0.0011 37 1 5.7639 7.1756 -0.0023 38 1 7.1282 10.0045 -1.0302 39 1 6.2745 9.7480 0.5105 40 1 7.9782 10.2637 0.5121 41 1 9.9615 9.5235 -0.5890 42 1 10.9892 8.0786 -0.4320 43 1 13.0972 10.8127 0.8491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349087263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:17 Heat of formation + Delta-G solvation = -9.337173 kcal Electronic energy + Delta-G solvation = -24258.738677 eV Core-core repulsion = 20533.362475 eV Total energy + Delta-G solvation = -3725.376203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.59710 -41.11703 -39.29649 -37.17559 -36.12919 -34.99870 -34.51715 -33.76030 -32.42828 -30.11141 -28.89641 -28.72868 -26.44787 -24.86986 -23.90438 -22.49361 -22.20501 -21.19156 -20.66339 -19.00990 -18.61644 -18.19363 -17.65611 -17.07347 -16.72060 -16.57654 -16.53262 -16.04873 -15.75596 -15.29594 -14.89030 -14.50118 -14.45537 -14.37417 -14.31301 -14.01524 -13.74897 -13.69875 -13.27357 -13.23638 -13.01987 -12.77063 -12.47134 -12.43390 -12.26360 -12.06995 -12.06840 -11.92067 -11.48475 -11.18278 -10.79905 -10.59724 -10.40592 -10.19445 -10.02006 -8.73249 -8.35185 -6.58218 -0.20094 0.39356 0.91595 1.36457 1.42662 1.51547 1.73737 1.84110 2.29428 2.73577 2.93623 2.96302 3.49380 3.60991 3.85653 4.02602 4.12787 4.19524 4.20624 4.45547 4.54932 4.63233 4.67858 4.75925 4.78488 4.79061 4.91196 4.94658 4.94834 5.05453 5.06338 5.26310 5.28238 5.35760 5.37886 5.48913 5.49196 5.66383 5.83154 5.96402 6.24933 6.29925 6.49418 6.60620 7.02671 7.15606 7.60582 8.64587 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.002210 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.511407 B =12664.448976 C =12849.575267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.123 4.123 4 C 0.115 3.885 5 N -0.698 5.698 6 C 0.522 3.478 7 O -0.546 6.546 8 C 0.474 3.526 9 O -0.582 6.582 10 N -0.690 5.690 11 C 0.449 3.551 12 C -0.337 4.337 13 C 0.204 3.796 14 C -0.098 4.098 15 N -0.333 5.333 16 C 0.263 3.737 17 C -0.563 4.563 18 H 0.059 0.941 19 C 0.034 3.966 20 N -0.910 5.910 21 Si 0.963 3.037 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.271 1.271 25 N -0.457 5.457 26 H 0.454 0.546 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.417 0.583 37 H 0.186 0.814 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.116 -7.134 -2.307 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.160 4.160 4 C -0.007 4.007 5 N -0.353 5.353 6 C 0.303 3.697 7 O -0.423 6.423 8 C 0.254 3.746 9 O -0.464 6.464 10 N -0.456 5.456 11 C 0.203 3.797 12 C -0.368 4.368 13 C 0.075 3.925 14 C -0.156 4.156 15 N -0.118 5.118 16 C 0.146 3.854 17 C -0.601 4.601 18 H 0.077 0.923 19 C -0.169 4.169 20 N -0.547 5.547 21 Si 0.788 3.212 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.196 1.196 25 N -0.178 5.178 26 H 0.303 0.697 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.254 0.746 37 H 0.203 0.797 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.906 -7.803 -2.366 17.874 hybrid contribution 0.582 0.536 0.831 1.147 sum -15.325 -7.267 -1.536 17.030 Atomic orbital electron populations 1.21755 0.94713 1.02198 1.02169 1.21438 0.96703 0.95081 1.02685 1.21798 0.91435 0.99023 1.03777 1.21608 0.95851 0.81129 1.02143 1.45799 1.05721 1.10657 1.73111 1.19911 0.83415 0.89170 0.77161 1.90657 1.56496 1.46376 1.48737 1.20580 0.86060 0.89199 0.78740 1.90564 1.60362 1.45417 1.50092 1.68682 1.17330 1.16500 1.43106 1.19296 0.83021 0.91638 0.85763 1.22295 1.02230 0.89217 1.23086 1.22093 0.81346 0.99279 0.89765 1.20892 1.03861 0.85094 1.05740 1.47993 1.08761 0.92733 1.62353 1.19874 0.78808 0.88251 0.98477 1.21526 1.13118 1.33092 0.92394 0.92298 1.25549 0.95096 0.94945 1.01289 1.69957 1.17458 1.34531 1.32796 0.85423 0.77973 0.78441 0.79388 1.19801 1.20665 1.19603 1.44625 1.07872 0.96556 1.68781 0.69692 0.92401 0.92082 0.92467 0.91511 0.91588 0.90440 0.90336 0.91728 0.91837 0.74568 0.79742 0.86934 0.86663 0.89719 0.90535 0.93751 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.43 5.93 30.60 0.18 -1.24 16 3 C -0.12 -1.70 5.33 30.60 0.16 -1.53 16 4 C 0.12 2.44 5.67 86.38 0.49 2.93 16 5 N -0.70 -18.90 5.55 -464.62 -2.58 -21.48 16 6 C 0.52 19.41 7.88 87.21 0.69 20.10 16 7 O -0.55 -23.42 16.91 -3.35 -0.06 -23.48 16 8 C 0.47 19.42 7.77 87.45 0.68 20.10 16 9 O -0.58 -23.24 13.39 -4.49 -0.06 -23.30 16 10 N -0.69 -29.81 10.33 -310.92 -3.21 -33.02 16 11 C 0.45 17.91 8.07 133.77 1.08 18.99 16 12 C -0.34 -12.19 9.41 22.23 0.21 -11.98 16 13 C 0.20 6.62 6.93 41.20 0.29 6.91 16 14 C -0.10 -2.30 9.92 71.24 0.71 -1.59 16 15 N -0.33 -12.08 3.63 -337.43 -1.22 -13.30 16 16 C 0.26 10.52 5.71 85.63 0.49 11.01 16 17 C -0.56 -25.65 9.39 25.60 0.24 -25.41 16 18 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 19 C 0.03 1.59 5.46 84.66 0.46 2.05 16 20 N -0.91 -44.42 13.29 21.45 0.28 -44.14 16 21 Si 0.96 38.05 29.54 68.60 2.03 40.08 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 25 N -0.46 -16.68 7.37 -54.85 -0.40 -17.08 16 26 H 0.45 14.92 8.96 -213.29 -1.91 13.01 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 9.84 7.94 -92.70 -0.74 9.10 16 37 H 0.19 6.70 5.77 -2.91 -0.02 6.68 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.08 2.20 7.80 -2.39 -0.02 2.18 16 41 H 0.08 3.01 7.88 -2.39 -0.02 2.99 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 Total: -1.00 -63.37 370.88 -0.44 -63.81 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -1.61 Total: 32.36 kcal Atomic # 6 Polarization: 33.16 SS G_CDS: 6.39 Total: 39.55 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -7.13 Total: -129.02 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.12 Total: -46.78 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -63.37 -0.44 -63.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349087263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.475 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds