Wall clock time and date at job start Fri Apr 10 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30994 * 119.99873 * 2 1 4 4 C 1.50701 * 120.00179 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47348 * 124.99416 * 4 3 2 6 6 H 1.08993 * 109.47194 * 304.99609 * 5 4 3 7 7 C 1.53006 * 109.47127 * 184.99767 * 5 4 3 8 8 O 1.42903 * 109.47256 * 305.00410 * 7 5 4 9 9 N 1.46500 * 109.47007 * 64.99986 * 5 4 3 10 10 C 1.34773 * 119.99910 * 204.99627 * 9 5 4 11 11 O 1.21836 * 120.00151 * 0.02562 * 10 9 5 12 12 N 1.33835 * 119.99928 * 180.02562 * 10 9 5 13 13 C 1.32928 * 119.99992 * 180.02562 * 12 10 9 14 14 C 1.41211 * 126.38305 * 0.02562 * 13 12 10 15 15 C 1.34956 * 108.24793 * 179.97438 * 14 13 12 16 16 N 1.36450 * 108.94715 * 359.97438 * 15 14 13 17 17 C 1.46501 * 125.85102 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46719 * 84.98452 * 17 16 15 19 19 H 1.08002 * 119.99802 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99860 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99842 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99779 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47072 * 90.00413 * 22 20 18 24 24 H 1.48505 * 109.46728 * 209.99672 * 22 20 18 25 25 H 1.48491 * 109.47223 * 329.99572 * 22 20 18 26 26 N 1.37427 * 126.38076 * 179.70731 * 13 12 10 27 27 H 0.97003 * 126.35714 * 0.02972 * 26 13 12 28 28 H 1.09007 * 109.46768 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47261 * 299.99334 * 1 2 3 30 30 H 1.09003 * 109.47289 * 59.99794 * 1 2 3 31 31 H 1.07999 * 120.00082 * 180.02562 * 2 1 3 32 32 H 1.08002 * 120.00129 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46894 * 4.99328 * 4 3 2 34 34 H 1.09001 * 109.46755 * 244.99952 * 4 3 2 35 35 H 1.09004 * 109.46579 * 64.99848 * 7 5 4 36 36 H 1.08992 * 109.47046 * 185.00032 * 7 5 4 37 37 H 0.96699 * 114.00071 * 179.97438 * 8 7 5 38 38 H 0.97003 * 119.99995 * 25.00503 * 9 5 4 39 39 H 1.07997 * 125.87151 * 359.95722 * 14 13 12 40 40 H 1.08001 * 125.52317 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.47177 * 204.97947 * 17 16 15 42 42 H 1.08996 * 109.47454 * 324.98224 * 17 16 15 43 43 H 0.97007 * 119.99570 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 6 1.8703 3.2946 1.1823 6 1 1.7584 2.7279 2.1065 7 6 1.0196 4.5643 1.2564 8 8 1.0739 5.2479 0.0027 9 7 3.2775 3.6596 1.0005 10 6 4.0411 3.9537 2.0713 11 8 3.5614 3.9156 3.1906 12 7 5.3264 4.2876 1.9052 13 6 6.0798 4.5772 2.9614 14 6 5.6659 4.5746 4.3115 15 6 6.7212 4.9219 5.0777 16 7 7.7989 5.1472 4.2716 17 6 9.1365 5.5441 4.7184 18 6 9.9233 4.3166 5.0997 19 1 9.4720 3.3389 5.0179 20 6 11.2190 4.4421 5.5541 21 7 11.7684 5.6328 5.6542 22 14 12.1941 2.9207 6.0275 23 1 12.9237 2.4108 4.8389 24 1 13.1673 3.2686 7.0939 25 1 11.2667 1.8737 6.5261 26 7 7.4082 4.9289 2.9434 27 1 7.9703 5.0124 2.1573 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 3.2420 1.1345 0.0004 33 1 0.3402 2.2423 0.0904 34 1 1.6026 2.9715 -0.9308 35 1 -0.0132 4.2969 1.4800 36 1 1.4050 5.2144 2.0418 37 1 0.5557 6.0639 -0.0231 38 1 3.6595 3.6897 0.1093 39 1 4.6752 4.3362 4.6692 40 1 6.7139 5.0075 6.1543 41 1 9.6487 6.0677 3.9111 42 1 9.0504 6.2034 5.5820 43 1 12.6799 5.7211 5.9742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352587957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:19 Heat of formation + Delta-G solvation = 10.377913 kcal Electronic energy + Delta-G solvation = -24651.675158 eV Core-core repulsion = 20927.153865 eV Total energy + Delta-G solvation = -3724.521292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.23278 -40.54420 -38.52780 -36.84216 -35.97317 -35.01041 -34.49761 -32.47921 -32.39164 -31.03274 -28.64264 -28.23961 -26.17798 -25.04656 -23.59352 -22.68263 -21.86095 -21.11197 -19.47827 -18.95875 -18.57996 -18.33536 -17.57752 -17.06953 -16.62680 -16.51688 -16.21850 -15.93302 -15.80442 -15.55341 -14.91693 -14.73690 -14.56997 -14.27972 -14.23909 -14.12504 -13.86019 -13.64682 -13.19220 -13.01057 -12.74747 -12.64776 -12.37488 -12.31360 -12.24367 -12.05156 -11.59799 -11.20924 -11.19625 -10.91589 -10.76910 -10.47914 -9.93654 -9.85808 -9.71368 -8.53131 -8.18120 -6.55072 0.34576 0.63750 1.34811 1.38164 1.42353 1.51137 1.71278 2.30253 2.40265 2.94105 3.06084 3.17646 3.49017 3.85197 3.94956 4.07198 4.21984 4.33841 4.38270 4.43960 4.49552 4.53903 4.60386 4.68550 4.84370 4.87257 4.87982 4.89316 5.00566 5.16398 5.19051 5.26225 5.30229 5.52468 5.71956 5.79835 5.83422 5.99177 6.02273 6.16753 6.38353 6.61856 6.91744 6.94861 7.07764 7.18728 8.19013 8.67104 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.002536 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.948502 B =11039.918877 C =11877.972002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.166 4.166 3 C -0.173 4.173 4 C -0.082 4.082 5 C 0.167 3.833 6 H 0.077 0.923 7 C 0.070 3.930 8 O -0.578 6.578 9 N -0.705 5.705 10 C 0.674 3.326 11 O -0.661 6.661 12 N -0.724 5.724 13 C 0.471 3.529 14 C -0.346 4.346 15 C 0.176 3.824 16 N -0.351 5.351 17 C 0.268 3.732 18 C -0.565 4.565 19 H 0.059 0.941 20 C 0.029 3.971 21 N -0.913 5.913 22 Si 0.963 3.037 23 H -0.277 1.277 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.469 5.469 27 H 0.451 0.549 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.393 0.607 38 H 0.401 0.599 39 H 0.173 0.827 40 H 0.223 0.777 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 -3.434 -8.001 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.184 4.184 3 C -0.191 4.191 4 C -0.119 4.119 5 C 0.062 3.938 6 H 0.095 0.905 7 C -0.009 4.009 8 O -0.386 6.386 9 N -0.358 5.358 10 C 0.372 3.628 11 O -0.546 6.546 12 N -0.489 5.489 13 C 0.217 3.783 14 C -0.378 4.378 15 C 0.032 3.968 16 N -0.137 5.137 17 C 0.151 3.849 18 C -0.603 4.603 19 H 0.077 0.923 20 C -0.173 4.173 21 N -0.551 5.551 22 Si 0.789 3.211 23 H -0.203 1.203 24 H -0.202 1.202 25 H -0.195 1.195 26 N -0.192 5.192 27 H 0.299 0.701 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.242 0.758 38 H 0.236 0.764 39 H 0.190 0.810 40 H 0.239 0.761 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.738 -3.762 -8.147 19.878 hybrid contribution 0.926 -0.100 0.328 0.988 sum -16.811 -3.861 -7.818 18.938 Atomic orbital electron populations 1.20905 0.91843 1.02983 1.02425 1.23012 0.97477 0.97496 1.00420 1.22798 0.99281 0.94953 1.02044 1.20856 1.00703 0.92670 0.97704 1.20913 0.79521 0.93837 0.99570 0.90498 1.22558 0.99323 0.93559 0.85430 1.86423 1.75618 1.42448 1.34062 1.44658 1.10098 1.72941 1.08090 1.16925 0.84523 0.77694 0.83618 1.90683 1.77433 1.61444 1.25031 1.68107 1.07585 1.43573 1.29675 1.18943 0.82718 0.84944 0.91670 1.22288 1.02416 1.21340 0.91804 1.23324 0.83959 0.90812 0.98711 1.47828 1.11881 1.60290 0.93725 1.19719 0.72845 0.95922 0.96399 1.21619 0.98795 0.93443 1.46460 0.92315 1.25602 0.98032 0.99097 0.94564 1.69966 1.15692 1.23717 1.45714 0.85457 0.78352 0.79215 0.78125 1.20291 1.20208 1.19467 1.44415 1.08937 1.66036 0.99839 0.70106 0.91281 0.91240 0.90755 0.87356 0.89085 0.87962 0.89847 0.90388 0.95638 0.75804 0.76414 0.80991 0.76101 0.93944 0.91070 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.65 71.24 0.62 -1.09 16 2 C -0.17 -3.10 10.26 25.65 0.26 -2.84 16 3 C -0.17 -3.77 9.25 25.65 0.24 -3.53 16 4 C -0.08 -1.64 4.72 29.85 0.14 -1.50 16 5 C 0.17 4.33 2.36 44.99 0.11 4.44 16 6 H 0.08 2.28 7.57 -2.39 -0.02 2.26 16 7 C 0.07 1.58 6.85 71.98 0.49 2.07 16 8 O -0.58 -11.79 12.83 -148.98 -1.91 -13.70 16 9 N -0.71 -22.55 4.72 -458.34 -2.16 -24.71 16 10 C 0.67 27.21 8.44 179.35 1.51 28.73 16 11 O -0.66 -29.24 12.92 -4.78 -0.06 -29.30 16 12 N -0.72 -29.79 10.59 -322.55 -3.42 -33.21 16 13 C 0.47 18.86 8.07 133.95 1.08 19.94 16 14 C -0.35 -13.16 9.52 22.25 0.21 -12.94 16 15 C 0.18 5.87 11.45 83.22 0.95 6.82 16 16 N -0.35 -13.00 3.63 -350.83 -1.28 -14.28 16 17 C 0.27 11.12 6.19 85.63 0.53 11.65 16 18 C -0.56 -26.68 9.39 25.60 0.24 -26.44 16 19 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 20 C 0.03 1.42 5.46 84.65 0.46 1.88 16 21 N -0.91 -46.09 13.29 21.45 0.28 -45.81 16 22 Si 0.96 39.16 29.54 68.60 2.03 41.18 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 N -0.47 -17.09 7.38 -54.78 -0.40 -17.49 16 27 H 0.45 14.66 8.96 -213.28 -1.91 12.75 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 30 H 0.07 0.88 7.85 -2.39 -0.02 0.86 16 31 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.09 2.31 8.03 -2.91 -0.02 2.29 16 33 H 0.10 1.60 5.79 -2.39 -0.01 1.59 16 34 H 0.08 1.70 7.73 -2.39 -0.02 1.68 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.39 4.57 9.12 -74.06 -0.68 3.90 16 38 H 0.40 12.13 8.70 -92.71 -0.81 11.32 16 39 H 0.17 6.99 5.77 -2.91 -0.02 6.97 16 40 H 0.22 5.52 8.06 -2.91 -0.02 5.49 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.27 13.14 8.31 -92.70 -0.77 12.37 16 Total: -1.00 -64.14 366.98 -2.41 -66.55 By element: Atomic # 1 Polarization: 45.93 SS G_CDS: -2.34 Total: 43.59 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 6.85 Total: 27.18 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -6.98 Total: -135.50 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.97 Total: -43.00 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Total: -64.14 -2.41 -66.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352587957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.927 kcal (2) G-P(sol) polarization free energy of solvation -64.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds