Wall clock time and date at job start Fri Apr 10 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30997 * 119.99719 * 2 1 4 4 C 1.50697 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47122 * 125.00204 * 4 3 2 6 6 H 1.09004 * 109.47434 * 55.00027 * 5 4 3 7 7 C 1.52997 * 109.47114 * 174.99834 * 5 4 3 8 8 O 1.42903 * 109.47059 * 55.00009 * 7 5 4 9 9 N 1.46498 * 109.46963 * 294.99627 * 5 4 3 10 10 C 1.34777 * 119.99828 * 154.72290 * 9 5 4 11 11 O 1.21843 * 120.00110 * 0.27998 * 10 9 5 12 12 N 1.33837 * 120.00178 * 180.27958 * 10 9 5 13 13 C 1.32929 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.41207 * 126.38413 * 0.02562 * 13 12 10 15 15 C 1.34947 * 108.24619 * 179.97438 * 14 13 12 16 16 N 1.36449 * 108.95146 * 359.97438 * 15 14 13 17 17 C 1.46501 * 125.85506 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47066 * 84.97981 * 17 16 15 19 19 H 1.08004 * 119.99944 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00000 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99963 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47327 * 59.99412 * 22 20 18 24 24 H 1.48496 * 109.46984 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46708 * 299.99361 * 22 20 18 26 26 N 1.37422 * 126.37401 * 179.71067 * 13 12 10 27 27 H 0.96999 * 126.36658 * 0.02562 * 26 13 12 28 28 H 1.08998 * 109.47001 * 300.00137 * 1 2 3 29 29 H 1.08999 * 109.46937 * 60.00378 * 1 2 3 30 30 H 1.09004 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99911 * 179.97438 * 2 1 3 32 32 H 1.08005 * 119.99661 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47173 * 4.99720 * 4 3 2 34 34 H 1.09007 * 109.47004 * 245.00280 * 4 3 2 35 35 H 1.08997 * 109.47241 * 175.00015 * 7 5 4 36 36 H 1.09002 * 109.47280 * 295.00109 * 7 5 4 37 37 H 0.96700 * 113.99965 * 180.02562 * 8 7 5 38 38 H 0.97001 * 120.00384 * 335.00737 * 9 5 4 39 39 H 1.08001 * 125.87525 * 359.96396 * 14 13 12 40 40 H 1.08001 * 125.52794 * 179.97438 * 15 14 13 41 41 H 1.09005 * 109.47395 * 204.97397 * 17 16 15 42 42 H 1.08997 * 109.46991 * 324.97939 * 17 16 15 43 43 H 0.96999 * 119.99974 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 6 1.8696 3.2952 1.1810 6 1 2.9519 3.4182 1.1401 7 6 1.1973 4.6677 1.1098 8 8 -0.2205 4.5009 1.0460 9 7 1.5001 2.6350 2.4355 10 6 2.1988 2.8862 3.5603 11 8 3.1345 3.6662 3.5349 12 7 1.8649 2.2788 4.7053 13 6 2.5537 2.5270 5.8147 14 6 3.6551 3.4019 5.9388 15 6 4.0726 3.3762 7.2218 16 7 3.2812 2.5181 7.9283 17 6 3.4081 2.2114 9.3552 18 6 2.6681 3.2487 10.1598 19 1 2.1549 4.0560 9.6584 20 6 2.6470 3.1678 11.5360 21 7 3.2723 2.1850 12.1466 22 14 1.7291 4.4532 12.5333 23 1 0.2942 4.4443 12.1513 24 1 1.8579 4.1424 13.9796 25 1 2.3054 5.7947 12.2616 26 7 2.3228 1.9843 7.0560 27 1 1.6269 1.3486 7.2853 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0470 -0.9354 0.0004 32 1 3.2420 1.1345 -0.0004 33 1 0.3402 2.2424 0.0886 34 1 1.6033 2.9712 -0.9321 35 1 1.4557 5.2453 1.9973 36 1 1.5415 5.1952 0.2201 37 1 -0.7126 5.3320 0.9984 38 1 0.7553 2.0140 2.4558 39 1 4.0887 3.9903 5.1437 40 1 4.8993 3.9429 7.6243 41 1 2.9845 1.2270 9.5544 42 1 4.4614 2.2172 9.6358 43 1 3.2572 2.1279 13.1148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352587958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:22 Heat of formation + Delta-G solvation = 32.211496 kcal Electronic energy + Delta-G solvation = -24837.854890 eV Core-core repulsion = 21114.280373 eV Total energy + Delta-G solvation = -3723.574517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72007 -39.20843 -37.38992 -35.97920 -34.36318 -33.62664 -32.84070 -30.99165 -30.90772 -29.90177 -27.65699 -26.56777 -25.34733 -23.37318 -22.15520 -21.23286 -20.62160 -19.71236 -18.59524 -17.38428 -17.28494 -16.88377 -16.24423 -15.95180 -15.24145 -14.95728 -14.88675 -14.63686 -14.44624 -14.11431 -13.67074 -13.53726 -13.48626 -13.07613 -12.88121 -12.61261 -12.52219 -12.30291 -11.97615 -11.93480 -11.75635 -11.34095 -11.02985 -10.98078 -10.70348 -10.52509 -10.37969 -10.01249 -9.64054 -9.53972 -8.99421 -8.97252 -8.89719 -8.48305 -8.27613 -6.83665 -6.45402 -4.63330 1.84771 2.14598 2.21284 3.08680 3.14143 3.16764 3.22251 3.69997 4.08133 4.30835 4.52546 4.67469 4.78100 4.83557 5.01885 5.09303 5.22610 5.31473 5.35469 5.40781 5.49244 5.59243 5.67395 5.78928 5.83223 5.91047 5.93850 6.05347 6.19018 6.33929 6.57320 6.59486 6.64619 6.77815 6.82504 7.19147 7.40455 7.45695 7.54313 7.59849 7.69081 7.93065 8.37543 8.47765 8.55245 9.07106 9.70961 10.54766 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002580 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.175595 B =10851.418477 C =11205.861485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.100 4.100 5 C 0.173 3.827 6 H 0.095 0.905 7 C 0.062 3.938 8 O -0.568 6.568 9 N -0.714 5.714 10 C 0.686 3.314 11 O -0.638 6.638 12 N -0.712 5.712 13 C 0.486 3.514 14 C -0.334 4.334 15 C 0.160 3.840 16 N -0.347 5.347 17 C 0.256 3.744 18 C -0.558 4.558 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.887 5.887 22 Si 0.910 3.090 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.473 5.473 27 H 0.444 0.556 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.374 0.626 38 H 0.397 0.603 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 0.052 -18.444 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.184 4.184 3 C -0.171 4.171 4 C -0.137 4.137 5 C 0.066 3.934 6 H 0.113 0.887 7 C -0.017 4.017 8 O -0.373 6.373 9 N -0.367 5.367 10 C 0.385 3.615 11 O -0.521 6.521 12 N -0.476 5.476 13 C 0.233 3.767 14 C -0.367 4.367 15 C 0.015 3.985 16 N -0.133 5.133 17 C 0.139 3.861 18 C -0.596 4.596 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.736 3.264 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.196 5.196 27 H 0.291 0.709 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.220 0.780 38 H 0.231 0.769 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.382 -0.799 -17.985 18.160 hybrid contribution -0.684 1.083 0.852 1.539 sum -3.066 0.285 -17.133 17.408 Atomic orbital electron populations 1.20858 0.93408 1.01854 1.01961 1.22745 0.96209 0.97734 1.01668 1.22761 0.99471 0.94248 1.00659 1.20981 1.01204 0.94088 0.97459 1.20698 0.99296 0.89883 0.83496 0.88731 1.22742 0.81095 0.97984 0.99890 1.86469 1.18182 1.35173 1.97465 1.44593 1.36223 1.49157 1.06688 1.16630 0.80899 0.80292 0.83634 1.90708 1.32739 1.41735 1.86898 1.68060 1.39394 1.42655 0.97508 1.18721 0.88145 0.85694 0.84176 1.22381 1.04757 1.11896 0.97644 1.22783 0.94083 0.89758 0.91836 1.47948 1.20909 1.37366 1.07086 1.20012 0.99976 0.98462 0.67612 1.21395 1.35139 1.11667 0.91412 0.91295 1.24953 0.95017 0.96101 0.97441 1.69889 1.41351 1.30749 1.10426 0.86351 0.80223 0.81244 0.78583 1.19862 1.20817 1.19686 1.44438 1.28333 1.43304 1.03479 0.70947 0.91375 0.91906 0.92529 0.87710 0.87595 0.89582 0.90188 0.92837 0.93512 0.78037 0.76921 0.80050 0.79748 0.93152 0.91473 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.65 36.01 0.31 -0.82 16 2 C -0.17 -1.70 10.26 -36.02 -0.37 -2.07 16 3 C -0.15 -1.66 9.25 -36.03 -0.33 -1.99 16 4 C -0.10 -1.05 4.72 -27.88 -0.13 -1.18 16 5 C 0.17 2.26 2.36 -67.93 -0.16 2.10 16 6 H 0.09 1.35 7.57 -51.93 -0.39 0.95 16 7 C 0.06 0.74 6.85 37.16 0.25 0.99 16 8 O -0.57 -6.39 12.83 -35.23 -0.45 -6.84 16 9 N -0.71 -11.37 4.74 -58.87 -0.28 -11.65 16 10 C 0.69 13.66 8.44 -87.75 -0.74 12.92 16 11 O -0.64 -13.78 12.92 5.06 0.07 -13.72 16 12 N -0.71 -14.52 10.59 -15.79 -0.17 -14.68 16 13 C 0.49 9.73 8.07 -155.29 -1.25 8.47 16 14 C -0.33 -6.38 9.52 -39.62 -0.38 -6.76 16 15 C 0.16 2.77 11.45 -16.67 -0.19 2.58 16 16 N -0.35 -6.58 3.63 -62.24 -0.23 -6.81 16 17 C 0.26 5.41 6.19 -5.19 -0.03 5.38 16 18 C -0.56 -13.42 9.39 -34.44 -0.32 -13.75 16 19 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 20 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -22.73 13.29 55.43 0.74 -21.99 16 22 Si 0.91 19.43 29.54 -169.99 -5.02 14.41 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 26 N -0.47 -8.70 7.38 31.33 0.23 -8.47 16 27 H 0.44 7.26 8.96 -182.55 -1.64 5.63 16 28 H 0.07 0.67 7.66 -51.93 -0.40 0.28 16 29 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.11 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.09 0.93 5.38 -51.93 -0.28 0.65 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.37 2.66 9.12 45.56 0.42 3.07 16 38 H 0.40 6.11 8.70 -40.82 -0.36 5.75 16 39 H 0.18 3.64 5.77 -52.49 -0.30 3.34 16 40 H 0.19 2.54 8.06 -52.49 -0.42 2.11 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -30.22 367.01 -9.73 -39.96 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -6.71 Total: 16.76 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -3.44 Total: 7.51 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 0.30 Total: -63.61 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.39 Total: -20.55 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.22 -9.73 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352587958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.168 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds