Wall clock time and date at job start Fri Apr 10 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48942 * 2 1 4 4 C 1.53096 * 109.47993 * 239.97124 * 2 1 3 5 5 C 1.53180 * 109.16300 * 182.40681 * 4 2 1 6 6 H 1.08996 * 109.54376 * 176.84667 * 5 4 2 7 7 N 1.46497 * 109.61302 * 297.07232 * 5 4 2 8 8 C 1.34782 * 119.99298 * 204.59998 * 7 5 4 9 9 O 1.21830 * 120.00290 * 359.97438 * 8 7 5 10 10 N 1.33837 * 119.99723 * 180.02562 * 8 7 5 11 11 C 1.32932 * 119.99878 * 179.97438 * 10 8 7 12 12 C 1.41209 * 126.37864 * 0.02562 * 11 10 8 13 13 C 1.34965 * 108.24287 * 179.97438 * 12 11 10 14 14 N 1.36454 * 108.94782 * 359.97438 * 13 12 11 15 15 C 1.46498 * 125.85329 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46632 * 85.02387 * 15 14 13 17 17 H 1.08002 * 120.00410 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99742 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47401 * 119.99911 * 20 18 16 23 23 H 1.48500 * 109.46891 * 239.99737 * 20 18 16 24 24 N 1.37415 * 126.37781 * 179.70744 * 11 10 8 25 25 H 0.97002 * 126.36806 * 359.97438 * 24 11 10 26 26 C 1.53180 * 109.03380 * 56.98167 * 5 4 2 27 27 C 1.53093 * 109.16207 * 303.01706 * 26 5 4 28 28 O 1.42905 * 109.41479 * 57.61537 * 27 26 5 29 29 H 1.08997 * 109.46984 * 299.97096 * 1 2 3 30 30 H 1.09002 * 109.47400 * 59.97199 * 1 2 3 31 31 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.52258 * 302.31440 * 4 2 1 33 33 H 1.09004 * 109.52122 * 62.50169 * 4 2 1 34 34 H 0.96995 * 120.00875 * 24.60080 * 7 5 4 35 35 H 1.07993 * 125.87771 * 359.95708 * 12 11 10 36 36 H 1.07996 * 125.52195 * 179.97438 * 13 12 11 37 37 H 1.08995 * 109.47335 * 205.02722 * 15 14 13 38 38 H 1.09003 * 109.47162 * 325.03088 * 15 14 13 39 39 H 0.96998 * 119.99876 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.52369 * 183.11217 * 26 5 4 41 41 H 1.09001 * 109.57559 * 62.95578 * 26 5 4 42 42 H 1.09000 * 109.48469 * 297.62848 * 27 26 5 43 43 H 1.09008 * 109.47818 * 177.58824 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5712 -0.7709 -1.2122 6 1 3.9392 -1.3327 -2.0707 7 7 4.1075 0.5918 -1.2517 8 6 5.3528 0.8125 -1.7176 9 8 6.0325 -0.1212 -2.1055 10 7 5.8431 2.0573 -1.7532 11 6 7.0715 2.2750 -2.2123 12 6 7.9709 1.2986 -2.6937 13 6 9.1096 1.9201 -3.0661 14 7 8.9766 3.2597 -2.8430 15 6 9.9920 4.2800 -3.1153 16 6 9.8992 4.7087 -4.5570 17 1 9.1577 4.2659 -5.2055 18 6 10.7609 5.6664 -5.0482 19 7 11.6642 6.2053 -4.2587 20 14 10.6454 6.1984 -6.8351 21 1 9.5549 5.4464 -7.5061 22 1 10.3568 7.6537 -6.9007 23 1 11.9332 5.9179 -7.5193 24 7 7.7003 3.4927 -2.3124 25 1 7.3302 4.3535 -2.0615 26 6 4.0177 -1.4601 0.0808 27 6 3.4308 -0.7093 1.2790 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5134 0.8902 30 1 -0.3634 0.5143 -0.8897 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6443 -1.7375 -1.2710 33 1 1.7148 -0.1843 -2.1399 34 1 3.5666 1.3352 -0.9426 35 1 7.7805 0.2373 -2.7533 36 1 9.9842 1.4357 -3.4745 37 1 9.8244 5.1411 -2.4685 38 1 10.9823 3.8676 -2.9220 39 1 12.2702 6.8793 -4.6043 40 1 5.1059 -1.4498 0.1421 41 1 3.6622 -2.4905 0.0870 42 1 3.8193 0.3090 1.2958 43 1 3.7100 -1.2204 2.2005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354942328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:26 Heat of formation + Delta-G solvation = 18.155487 kcal Electronic energy + Delta-G solvation = -25058.018235 eV Core-core repulsion = 21333.834204 eV Total energy + Delta-G solvation = -3724.184032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79319 -40.07554 -38.36489 -35.09443 -34.08561 -32.97403 -32.85348 -31.37337 -31.02744 -30.24951 -27.83017 -26.63819 -24.28535 -23.34903 -22.44555 -21.91575 -21.25635 -20.19425 -19.15328 -17.51487 -16.94820 -16.42654 -16.27443 -16.00622 -15.69435 -15.03451 -14.93421 -14.83245 -14.49993 -14.19734 -13.96572 -13.60343 -13.14669 -12.90470 -12.81032 -12.63808 -12.50929 -12.40999 -12.12921 -11.97807 -11.93276 -11.35612 -11.26713 -11.09130 -10.96977 -10.54688 -10.43664 -10.36131 -9.72254 -9.57225 -9.51246 -9.02768 -8.93212 -8.61369 -8.35222 -6.89816 -6.49037 -4.66074 1.78875 2.08848 3.03849 3.13144 3.15311 3.19230 3.58691 3.66503 4.05964 4.45714 4.51645 4.65789 4.67382 4.80871 4.87134 4.98331 5.01151 5.20791 5.27415 5.39867 5.42188 5.46750 5.55123 5.71650 5.77806 5.85234 5.91971 5.97761 5.99272 6.03473 6.10171 6.27235 6.52934 6.56063 6.73535 7.08523 7.13349 7.35841 7.39679 7.51156 7.63049 7.85935 8.28720 8.43009 8.46879 9.04610 9.62060 10.51968 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031318 B = 0.002411 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.851190 B =11611.809143 C =11866.648900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.162 3.838 6 H 0.088 0.912 7 N -0.727 5.727 8 C 0.686 3.314 9 O -0.631 6.631 10 N -0.715 5.715 11 C 0.487 3.513 12 C -0.334 4.334 13 C 0.161 3.839 14 N -0.346 5.346 15 C 0.255 3.745 16 C -0.557 4.557 17 H 0.070 0.930 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.278 1.278 24 N -0.472 5.472 25 H 0.444 0.556 26 C -0.165 4.165 27 C 0.064 3.936 28 O -0.382 6.382 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 -9.586 7.105 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.076 0.924 4 C -0.194 4.194 5 C 0.055 3.945 6 H 0.106 0.894 7 N -0.381 5.381 8 C 0.385 3.615 9 O -0.514 6.514 10 N -0.480 5.480 11 C 0.233 3.767 12 C -0.367 4.367 13 C 0.016 3.984 14 N -0.132 5.132 15 C 0.138 3.862 16 C -0.595 4.595 17 H 0.088 0.912 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.204 1.204 24 N -0.194 5.194 25 H 0.291 0.709 26 C -0.204 4.204 27 C -0.013 4.013 28 O -0.302 6.302 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.200 0.800 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.339 -9.279 7.233 17.786 hybrid contribution 0.283 0.823 -1.142 1.436 sum -13.056 -8.455 6.092 16.705 Atomic orbital electron populations 1.21765 0.93115 1.02833 1.02422 1.22058 0.94940 0.95125 0.85184 0.92420 1.22510 0.95296 1.02672 0.98967 1.20662 0.91902 0.83735 0.98165 0.89358 1.44832 1.15749 1.07982 1.69581 1.16618 0.81875 0.85277 0.77726 1.90720 1.58638 1.47617 1.54385 1.68048 1.12651 1.23687 1.43579 1.18705 0.89101 0.83140 0.85751 1.22386 0.94408 1.02525 1.17332 1.22806 1.00035 0.81919 0.93605 1.47982 1.03446 1.08027 1.53729 1.20039 0.83127 0.84971 0.98023 1.21462 1.19503 1.23992 0.94559 0.91183 1.24963 0.94366 0.95178 0.99066 1.69906 1.19064 1.27266 1.36118 0.86245 0.78459 0.78617 0.83111 1.19394 1.20526 1.20398 1.44445 1.06171 1.08850 1.59960 0.70919 1.22569 1.02380 0.99824 0.95673 1.22526 0.80428 1.00141 0.98184 1.87898 1.21408 1.77982 1.42895 0.91898 0.91080 0.91854 0.89808 0.90267 0.77266 0.80014 0.79664 0.93122 0.91413 0.91905 0.90127 0.90736 0.92885 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.56 37.16 0.36 -0.77 16 2 C 0.08 0.83 3.09 -26.68 -0.08 0.75 16 3 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 4 C -0.16 -1.54 5.08 -26.59 -0.13 -1.67 16 5 C 0.16 2.06 2.81 -67.75 -0.19 1.87 16 6 H 0.09 1.28 7.59 -51.93 -0.39 0.88 16 7 N -0.73 -10.85 4.41 -58.69 -0.26 -11.11 16 8 C 0.69 13.16 8.44 -87.75 -0.74 12.42 16 9 O -0.63 -13.42 12.93 5.07 0.07 -13.35 16 10 N -0.71 -14.01 10.59 -15.79 -0.17 -14.18 16 11 C 0.49 9.44 8.07 -155.30 -1.25 8.19 16 12 C -0.33 -6.24 9.52 -39.62 -0.38 -6.62 16 13 C 0.16 2.73 11.45 -16.66 -0.19 2.54 16 14 N -0.35 -6.42 3.63 -62.25 -0.23 -6.65 16 15 C 0.25 5.30 6.19 -5.20 -0.03 5.27 16 16 C -0.56 -13.23 9.39 -34.44 -0.32 -13.55 16 17 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -22.49 13.29 55.43 0.74 -21.75 16 20 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 N -0.47 -8.43 7.38 31.33 0.23 -8.20 16 25 H 0.44 7.01 8.96 -182.55 -1.64 5.37 16 26 C -0.17 -1.98 5.80 -26.59 -0.15 -2.13 16 27 C 0.06 0.72 6.68 37.21 0.25 0.97 16 28 O -0.38 -4.44 10.41 -35.23 -0.37 -4.80 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.39 5.36 7.18 -40.82 -0.29 5.06 16 35 H 0.18 3.59 5.77 -52.49 -0.30 3.28 16 36 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.64 7.75 -51.93 -0.40 0.24 16 43 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -29.10 354.61 -10.21 -39.31 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.57 Total: 12.32 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.97 Total: 8.85 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.32 Total: -61.89 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.30 Total: -18.16 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.10 -10.21 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354942328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.465 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds