Wall clock time and date at job start Fri Apr 10 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.48613 * 2 1 4 4 C 1.53096 * 109.48071 * 120.02035 * 2 1 3 5 5 C 1.53181 * 109.16662 * 177.59197 * 4 2 1 6 6 H 1.08994 * 109.54593 * 183.06330 * 5 4 2 7 7 N 1.46501 * 109.53947 * 62.88808 * 5 4 2 8 8 C 1.34777 * 119.99607 * 155.00094 * 7 5 4 9 9 O 1.21836 * 120.00401 * 0.02562 * 8 7 5 10 10 N 1.33836 * 119.99651 * 179.97438 * 8 7 5 11 11 C 1.32937 * 119.99521 * 180.02562 * 10 8 7 12 12 C 1.41209 * 126.38161 * 359.97438 * 11 10 8 13 13 C 1.34960 * 108.24212 * 179.75580 * 12 11 10 14 14 N 1.36460 * 108.94844 * 0.40420 * 13 12 11 15 15 C 1.46491 * 125.85002 * 179.86369 * 14 13 12 16 16 C 1.50702 * 109.46957 * 274.68692 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 N 1.37421 * 126.37581 * 180.02562 * 11 10 8 25 25 H 0.97004 * 126.36335 * 0.02562 * 24 11 10 26 26 C 1.53182 * 109.03389 * 303.02333 * 5 4 2 27 27 C 1.53098 * 109.16443 * 56.98137 * 26 5 4 28 28 O 1.42899 * 109.41196 * 302.38679 * 27 26 5 29 29 H 1.08993 * 109.47523 * 299.97854 * 1 2 3 30 30 H 1.09007 * 109.46587 * 59.97689 * 1 2 3 31 31 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.51950 * 57.68986 * 4 2 1 33 33 H 1.08994 * 109.52528 * 297.50419 * 4 2 1 34 34 H 0.97002 * 120.00172 * 334.99823 * 7 5 4 35 35 H 1.08002 * 125.87653 * 0.02562 * 12 11 10 36 36 H 1.07992 * 125.52400 * 180.23919 * 13 12 11 37 37 H 1.09004 * 109.47166 * 154.68958 * 15 14 13 38 38 H 1.08994 * 109.47507 * 34.68664 * 15 14 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.51916 * 176.88105 * 26 5 4 41 41 H 1.09002 * 109.52175 * 297.06927 * 26 5 4 42 42 H 1.09002 * 109.47923 * 182.40775 * 27 26 5 43 43 H 1.08993 * 109.48109 * 62.36871 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7708 1.2124 6 1 3.9392 -1.3310 2.0718 7 7 4.1057 0.5927 1.2508 8 6 5.3477 0.8163 1.7240 9 8 6.0259 -0.1153 2.1195 10 7 5.8363 2.0618 1.7586 11 6 7.0615 2.2824 2.2250 12 6 7.9589 1.3087 2.7156 13 6 9.0966 1.9320 3.0877 14 7 8.9618 3.2713 2.8635 15 6 9.9746 4.2933 3.1383 16 6 9.8721 4.7279 4.5777 17 1 9.1273 4.2865 5.2233 18 6 10.7333 5.6845 5.0721 19 7 11.6405 6.2217 4.2860 20 14 10.6112 6.2175 6.8582 21 1 11.4860 5.3554 7.6929 22 1 11.0455 7.6320 6.9834 23 1 9.2052 6.0887 7.3183 24 7 7.6903 3.5006 2.3203 25 1 7.3224 4.3596 2.0601 26 6 4.0176 -1.4601 -0.0806 27 6 3.4308 -0.7094 -1.2789 28 8 2.0067 -0.6743 -1.1663 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5142 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6443 -1.7373 1.2711 33 1 1.7148 -0.1842 2.1399 34 1 3.5659 1.3344 0.9355 35 1 7.7691 0.2472 2.7778 36 1 9.9708 1.4494 3.4990 37 1 9.8105 5.1519 2.4871 38 1 10.9665 3.8811 2.9531 39 1 12.2462 6.8949 4.6337 40 1 5.1059 -1.4497 -0.1418 41 1 3.6613 -2.4902 -0.0860 42 1 3.7101 -1.2205 -2.2003 43 1 3.8193 0.3088 -1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354942330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:31 Heat of formation + Delta-G solvation = 18.224368 kcal Electronic energy + Delta-G solvation = -25056.837389 eV Core-core repulsion = 21332.656345 eV Total energy + Delta-G solvation = -3724.181045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79366 -40.07714 -38.36448 -35.09452 -34.08463 -32.97375 -32.85398 -31.37285 -31.02818 -30.24935 -27.83015 -26.63738 -24.28613 -23.34709 -22.44579 -21.91719 -21.25733 -20.19458 -19.15216 -17.51457 -16.94536 -16.42762 -16.27456 -16.00587 -15.69452 -15.03283 -14.93559 -14.83338 -14.50092 -14.20061 -13.96657 -13.60477 -13.14638 -12.90305 -12.81017 -12.63519 -12.50580 -12.40827 -12.12938 -11.97704 -11.93398 -11.36737 -11.26821 -11.06913 -10.97201 -10.54653 -10.44165 -10.37081 -9.72231 -9.58144 -9.51305 -9.02872 -8.92479 -8.61439 -8.35241 -6.89722 -6.48843 -4.65874 1.79045 2.08575 3.05196 3.13004 3.14883 3.18417 3.58686 3.66408 4.06050 4.45741 4.51605 4.65805 4.67376 4.81054 4.87087 4.98190 5.01038 5.20804 5.27297 5.39815 5.42209 5.46763 5.55142 5.71590 5.77733 5.85216 5.91946 5.97759 5.99271 6.03407 6.09913 6.27184 6.52912 6.55980 6.73448 7.08481 7.13288 7.35735 7.39707 7.51345 7.63015 7.85971 8.28684 8.42891 8.46815 9.04695 9.62050 10.52197 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.002411 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.032704 B =11612.192205 C =11867.685157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.162 3.838 6 H 0.089 0.911 7 N -0.727 5.727 8 C 0.686 3.314 9 O -0.631 6.631 10 N -0.715 5.715 11 C 0.486 3.514 12 C -0.333 4.333 13 C 0.161 3.839 14 N -0.346 5.346 15 C 0.255 3.745 16 C -0.558 4.558 17 H 0.069 0.931 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.910 3.090 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.271 1.271 24 N -0.471 5.471 25 H 0.444 0.556 26 C -0.165 4.165 27 C 0.064 3.936 28 O -0.382 6.382 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.272 0.728 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 -9.620 -7.163 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.076 0.924 4 C -0.195 4.195 5 C 0.055 3.945 6 H 0.107 0.893 7 N -0.381 5.381 8 C 0.385 3.615 9 O -0.514 6.514 10 N -0.480 5.480 11 C 0.233 3.767 12 C -0.366 4.366 13 C 0.016 3.984 14 N -0.132 5.132 15 C 0.139 3.861 16 C -0.596 4.596 17 H 0.088 0.912 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.736 3.264 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.196 1.196 24 N -0.194 5.194 25 H 0.291 0.709 26 C -0.204 4.204 27 C -0.013 4.013 28 O -0.302 6.302 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.200 0.800 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.272 -9.306 -7.290 17.773 hybrid contribution 0.280 0.807 1.144 1.427 sum -12.993 -8.499 -6.146 16.698 Atomic orbital electron populations 1.21763 0.93113 1.02834 1.02423 1.22057 0.94943 0.95123 0.85182 0.92422 1.22511 0.95315 1.02667 0.98966 1.20671 0.91912 0.83720 0.98175 0.89320 1.44838 1.16088 1.08023 1.69201 1.16621 0.81854 0.85274 0.77755 1.90722 1.58608 1.47794 1.54249 1.68052 1.12845 1.23603 1.43463 1.18709 0.89070 0.83132 0.85792 1.22387 0.94425 1.02554 1.17276 1.22806 1.00001 0.81900 0.93678 1.47973 1.03865 1.08047 1.53295 1.20031 0.83204 0.84893 0.97990 1.21421 1.19358 1.24047 0.94742 0.91235 1.24961 0.94362 0.95175 0.99060 1.69900 1.18908 1.27352 1.36197 0.86289 0.78882 0.78041 0.83168 1.20033 1.20748 1.19556 1.44446 1.06615 1.08968 1.59390 0.70916 1.22571 1.02363 0.99833 0.95672 1.22524 0.80432 1.00140 0.98183 1.87897 1.21404 1.77979 1.42904 0.91078 0.91898 0.91852 0.89817 0.90266 0.77263 0.80012 0.79667 0.93129 0.91441 0.91853 0.90135 0.90729 0.89167 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.56 37.16 0.36 -0.77 16 2 C 0.08 0.84 3.09 -26.68 -0.08 0.75 16 3 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 4 C -0.16 -1.54 5.07 -26.59 -0.13 -1.68 16 5 C 0.16 2.06 2.82 -67.74 -0.19 1.87 16 6 H 0.09 1.28 7.57 -51.93 -0.39 0.89 16 7 N -0.73 -10.86 4.40 -58.69 -0.26 -11.12 16 8 C 0.69 13.16 8.44 -87.76 -0.74 12.42 16 9 O -0.63 -13.42 12.92 5.07 0.07 -13.36 16 10 N -0.71 -14.02 10.59 -15.79 -0.17 -14.18 16 11 C 0.49 9.45 8.07 -155.29 -1.25 8.19 16 12 C -0.33 -6.24 9.52 -39.62 -0.38 -6.61 16 13 C 0.16 2.73 11.45 -16.66 -0.19 2.54 16 14 N -0.35 -6.42 3.63 -62.25 -0.23 -6.65 16 15 C 0.26 5.31 6.19 -5.20 -0.03 5.28 16 16 C -0.56 -13.25 9.39 -34.44 -0.32 -13.57 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -22.50 13.29 55.43 0.74 -21.76 16 20 Si 0.91 19.26 29.54 -169.99 -5.02 14.23 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 N -0.47 -8.43 7.38 31.33 0.23 -8.20 16 25 H 0.44 7.01 8.96 -182.55 -1.64 5.38 16 26 C -0.17 -1.97 5.81 -26.59 -0.15 -2.13 16 27 C 0.06 0.72 6.68 37.21 0.25 0.96 16 28 O -0.38 -4.43 10.41 -35.23 -0.37 -4.80 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 5.36 7.17 -40.82 -0.29 5.07 16 35 H 0.18 3.59 5.77 -52.49 -0.30 3.28 16 36 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.64 7.75 -51.93 -0.40 0.24 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -29.08 354.57 -10.21 -39.29 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.57 Total: 12.36 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.97 Total: 8.85 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.32 Total: -61.91 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.30 Total: -18.16 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.08 -10.21 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354942330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.515 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds