Wall clock time and date at job start Fri Apr 10 2020 17:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.48613 * 2 1 4 4 C 1.53096 * 109.48071 * 120.02035 * 2 1 3 5 5 C 1.53181 * 109.16662 * 177.59197 * 4 2 1 6 6 H 1.08994 * 109.54593 * 183.06330 * 5 4 2 7 7 N 1.46501 * 109.53947 * 62.88808 * 5 4 2 8 8 C 1.34777 * 119.99607 * 155.00094 * 7 5 4 9 9 O 1.21836 * 120.00401 * 0.02562 * 8 7 5 10 10 N 1.33836 * 119.99651 * 179.97438 * 8 7 5 11 11 C 1.32937 * 119.99521 * 180.02562 * 10 8 7 12 12 C 1.41209 * 126.38161 * 359.97438 * 11 10 8 13 13 C 1.34960 * 108.24212 * 179.75580 * 12 11 10 14 14 N 1.36460 * 108.94844 * 0.40420 * 13 12 11 15 15 C 1.46491 * 125.85002 * 179.86369 * 14 13 12 16 16 C 1.50702 * 109.46957 * 274.68692 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 N 1.37421 * 126.37581 * 180.02562 * 11 10 8 25 25 H 0.97004 * 126.36335 * 0.02562 * 24 11 10 26 26 C 1.53182 * 109.03389 * 303.02333 * 5 4 2 27 27 C 1.53098 * 109.16443 * 56.98137 * 26 5 4 28 28 O 1.42899 * 109.41196 * 302.38679 * 27 26 5 29 29 H 1.08993 * 109.47523 * 299.97854 * 1 2 3 30 30 H 1.09007 * 109.46587 * 59.97689 * 1 2 3 31 31 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.51950 * 57.68986 * 4 2 1 33 33 H 1.08994 * 109.52528 * 297.50419 * 4 2 1 34 34 H 0.97002 * 120.00172 * 334.99823 * 7 5 4 35 35 H 1.08002 * 125.87653 * 0.02562 * 12 11 10 36 36 H 1.07992 * 125.52400 * 180.23919 * 13 12 11 37 37 H 1.09004 * 109.47166 * 154.68958 * 15 14 13 38 38 H 1.08994 * 109.47507 * 34.68664 * 15 14 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.51916 * 176.88105 * 26 5 4 41 41 H 1.09002 * 109.52175 * 297.06927 * 26 5 4 42 42 H 1.09002 * 109.47923 * 182.40775 * 27 26 5 43 43 H 1.08993 * 109.48109 * 62.36871 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7708 1.2124 6 1 3.9392 -1.3310 2.0718 7 7 4.1057 0.5927 1.2508 8 6 5.3477 0.8163 1.7240 9 8 6.0259 -0.1153 2.1195 10 7 5.8363 2.0618 1.7586 11 6 7.0615 2.2824 2.2250 12 6 7.9589 1.3087 2.7156 13 6 9.0966 1.9320 3.0877 14 7 8.9618 3.2713 2.8635 15 6 9.9746 4.2933 3.1383 16 6 9.8721 4.7279 4.5777 17 1 9.1273 4.2865 5.2233 18 6 10.7333 5.6845 5.0721 19 7 11.6405 6.2217 4.2860 20 14 10.6112 6.2175 6.8582 21 1 11.4860 5.3554 7.6929 22 1 11.0455 7.6320 6.9834 23 1 9.2052 6.0887 7.3183 24 7 7.6903 3.5006 2.3203 25 1 7.3224 4.3596 2.0601 26 6 4.0176 -1.4601 -0.0806 27 6 3.4308 -0.7094 -1.2789 28 8 2.0067 -0.6743 -1.1663 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5142 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6443 -1.7373 1.2711 33 1 1.7148 -0.1842 2.1399 34 1 3.5659 1.3344 0.9355 35 1 7.7691 0.2472 2.7778 36 1 9.9708 1.4494 3.4990 37 1 9.8105 5.1519 2.4871 38 1 10.9665 3.8811 2.9531 39 1 12.2462 6.8949 4.6337 40 1 5.1059 -1.4497 -0.1418 41 1 3.6613 -2.4902 -0.0860 42 1 3.7101 -1.2205 -2.2003 43 1 3.8193 0.3088 -1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354942330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:30 Heat of formation + Delta-G solvation = -0.684645 kcal Electronic energy + Delta-G solvation = -25057.657346 eV Core-core repulsion = 21332.656345 eV Total energy + Delta-G solvation = -3725.001001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.25790 -41.14395 -39.65426 -36.33533 -35.66949 -34.55131 -33.70928 -32.72653 -32.47514 -31.67911 -28.71821 -28.23138 -25.32810 -24.89244 -23.58468 -23.04670 -22.67354 -21.51765 -20.30196 -19.04771 -18.66183 -17.69605 -17.23870 -17.14027 -16.87323 -16.58955 -16.39105 -15.99949 -15.80613 -15.62094 -15.14957 -14.74414 -14.55479 -14.27907 -14.20693 -13.82124 -13.65990 -13.43684 -13.28192 -13.08727 -12.90170 -12.79745 -12.73398 -12.32057 -12.09437 -12.07052 -11.88072 -11.28675 -11.22252 -11.20205 -10.76674 -10.49983 -10.43454 -9.92468 -9.84826 -8.54244 -8.19903 -6.55334 0.32965 0.61800 1.38544 1.42539 1.50838 1.69453 2.29020 2.35748 2.83290 2.93779 3.04102 3.15576 3.71917 3.82191 3.92498 3.93935 4.03825 4.19921 4.30037 4.34943 4.47826 4.55809 4.64846 4.70534 4.78748 4.80444 4.87263 4.89906 4.97984 5.01770 5.08058 5.12881 5.18096 5.28671 5.34281 5.52123 5.71602 5.79483 5.97958 6.14826 6.28381 6.36576 6.60581 6.91481 7.01960 7.18484 8.15171 8.66851 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.002411 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.032704 B =11612.192205 C =11867.685157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 H 0.054 0.946 4 C -0.146 4.146 5 C 0.156 3.844 6 H 0.069 0.931 7 N -0.713 5.713 8 C 0.674 3.326 9 O -0.658 6.658 10 N -0.724 5.724 11 C 0.471 3.529 12 C -0.346 4.346 13 C 0.176 3.824 14 N -0.351 5.351 15 C 0.268 3.732 16 C -0.565 4.565 17 H 0.059 0.941 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.275 1.275 24 N -0.467 5.467 25 H 0.451 0.549 26 C -0.159 4.159 27 C 0.068 3.932 28 O -0.390 6.390 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.400 0.600 35 H 0.173 0.827 36 H 0.222 0.778 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.274 0.726 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.381 -9.916 -6.898 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.022 3.978 3 H 0.072 0.928 4 C -0.184 4.184 5 C 0.051 3.949 6 H 0.088 0.912 7 N -0.368 5.368 8 C 0.373 3.627 9 O -0.543 6.543 10 N -0.489 5.489 11 C 0.218 3.782 12 C -0.378 4.378 13 C 0.032 3.968 14 N -0.137 5.137 15 C 0.151 3.849 16 C -0.603 4.603 17 H 0.077 0.923 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.789 3.211 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.200 1.200 24 N -0.191 5.191 25 H 0.300 0.700 26 C -0.198 4.198 27 C -0.009 4.009 28 O -0.310 6.310 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.236 0.764 35 H 0.190 0.810 36 H 0.239 0.761 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.268 -9.605 -7.044 18.586 hybrid contribution 0.538 0.866 1.035 1.453 sum -13.729 -8.738 -6.008 17.348 Atomic orbital electron populations 1.21765 0.91279 1.03405 1.03281 1.22223 0.96356 0.94702 0.84515 0.92802 1.22464 0.92687 1.03784 0.99449 1.20841 0.93930 0.82293 0.97855 0.91246 1.44803 1.14758 1.09298 1.67912 1.16924 0.82901 0.84893 0.77995 1.90698 1.59628 1.48341 1.55592 1.68108 1.13116 1.23879 1.43814 1.18928 0.89376 0.83781 0.86124 1.22289 0.95152 1.02107 1.18280 1.23331 1.00484 0.80953 0.92020 1.47837 1.03898 1.08270 1.53662 1.19720 0.83763 0.85056 0.96351 1.21612 1.18809 1.23912 0.95978 0.92292 1.25602 0.94209 0.95338 1.02140 1.69963 1.19617 1.27985 1.37531 0.85452 0.78456 0.77715 0.79482 1.19475 1.20546 1.19988 1.44416 1.06333 1.09029 1.59286 0.70042 1.22498 1.00874 1.00829 0.95634 1.22488 0.80488 0.99475 0.98415 1.87900 1.21184 1.78169 1.43708 0.89517 0.91800 0.91412 0.88350 0.89423 0.76428 0.81021 0.76117 0.93893 0.91111 0.91714 0.92512 0.89138 0.87681 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.56 71.98 0.69 -1.18 16 2 C 0.08 1.43 3.09 30.62 0.09 1.52 16 3 H 0.05 1.01 6.71 -2.39 -0.02 0.99 16 4 C -0.15 -2.63 5.07 30.69 0.16 -2.47 16 5 C 0.16 3.92 2.82 45.11 0.13 4.05 16 6 H 0.07 2.03 7.57 -2.39 -0.02 2.01 16 7 N -0.71 -21.29 4.40 -457.75 -2.02 -23.30 16 8 C 0.67 26.19 8.44 179.35 1.51 27.70 16 9 O -0.66 -28.58 12.92 -4.78 -0.06 -28.64 16 10 N -0.72 -28.56 10.59 -322.55 -3.42 -31.98 16 11 C 0.47 18.30 8.07 133.95 1.08 19.38 16 12 C -0.35 -12.85 9.52 22.25 0.21 -12.64 16 13 C 0.18 5.75 11.45 83.22 0.95 6.70 16 14 N -0.35 -12.70 3.63 -350.86 -1.28 -13.98 16 15 C 0.27 10.94 6.19 85.64 0.53 11.47 16 16 C -0.56 -26.35 9.39 25.60 0.24 -26.11 16 17 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 18 C 0.03 1.41 5.46 84.66 0.46 1.87 16 19 N -0.91 -45.70 13.29 21.45 0.28 -45.42 16 20 Si 0.96 38.75 29.54 68.60 2.03 40.78 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 N -0.47 -16.52 7.38 -54.78 -0.40 -16.93 16 25 H 0.45 14.14 8.96 -213.28 -1.91 12.23 16 26 C -0.16 -3.74 5.81 30.69 0.18 -3.56 16 27 C 0.07 1.47 6.68 72.01 0.48 1.95 16 28 O -0.39 -8.41 10.41 -148.98 -1.55 -9.96 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.40 10.76 7.17 -92.71 -0.66 10.09 16 35 H 0.17 6.86 5.77 -2.91 -0.02 6.84 16 36 H 0.22 5.38 8.06 -2.91 -0.02 5.36 16 37 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.27 13.03 8.31 -92.70 -0.77 12.26 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.04 0.98 7.75 -2.39 -0.02 0.96 16 Total: -1.00 -61.18 354.57 -1.23 -62.41 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -1.54 Total: 38.33 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 6.72 Total: 28.68 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -6.83 Total: -131.60 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.61 Total: -38.60 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -61.18 -1.23 -62.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354942330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.723 kcal (2) G-P(sol) polarization free energy of solvation -61.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds