Wall clock time and date at job start Fri Apr 10 2020 17:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29947 * 126.28980 * 2 1 4 4 O 1.21293 * 110.25357 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81329 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.54947 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.52347 * 240.02454 * 6 5 4 8 8 C 1.53117 * 109.52200 * 119.90349 * 6 5 4 9 9 C 1.53176 * 109.20777 * 297.68524 * 8 6 5 10 10 N 1.46838 * 109.55536 * 300.86220 * 9 8 6 11 11 C 1.46904 * 111.00141 * 185.83586 * 10 9 8 12 12 C 1.50708 * 109.46779 * 65.78667 * 11 10 9 13 13 O 1.21294 * 120.00146 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99876 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99604 * 180.02562 * 14 12 11 16 16 H 1.07993 * 120.00367 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99586 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99925 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99809 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47246 * 59.99982 * 19 17 15 21 21 H 1.48503 * 109.46872 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47252 * 299.99307 * 19 17 15 23 23 C 1.46848 * 111.20097 * 61.74295 * 10 9 8 24 24 C 1.53040 * 109.52071 * 298.25301 * 23 10 9 25 25 N 1.31131 * 106.89535 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.47343 * 270.00060 * 1 2 3 27 27 H 1.09000 * 109.47482 * 30.00453 * 1 2 3 28 28 H 1.09009 * 109.47369 * 149.99898 * 1 2 3 29 29 H 1.09000 * 109.46946 * 60.00159 * 7 6 5 30 30 H 1.09000 * 109.47257 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.47267 * 300.00652 * 7 6 5 32 32 H 1.08998 * 109.50621 * 57.68657 * 8 6 5 33 33 H 1.08998 * 109.50864 * 177.80796 * 8 6 5 34 34 H 1.08997 * 109.44742 * 180.83199 * 9 8 6 35 35 H 1.09005 * 109.43428 * 60.87842 * 9 8 6 36 36 H 1.08998 * 109.47483 * 185.78583 * 11 10 9 37 37 H 1.08995 * 109.47288 * 305.79560 * 11 10 9 38 38 H 0.97001 * 119.99556 * 359.97438 * 14 12 11 39 39 H 0.97000 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46197 * 178.24438 * 23 10 9 41 41 H 1.08990 * 109.46438 * 58.27065 * 23 10 9 42 42 H 1.08998 * 109.50562 * 299.24306 * 24 23 10 43 43 H 1.08995 * 109.50463 * 179.11619 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4369 -0.0014 7 6 4.8357 -2.3197 -1.2504 8 6 4.8389 -2.3186 1.2498 9 6 4.8613 -1.4263 2.4946 10 7 6.0388 -0.5501 2.4501 11 6 6.1679 0.2218 3.6933 12 6 6.4542 -0.7149 4.8387 13 8 6.5424 -1.9080 4.6390 14 7 6.6121 -0.2268 6.0851 15 6 6.8730 -1.0788 7.1269 16 1 6.9516 -2.1411 6.9490 17 6 7.0353 -0.5757 8.4119 18 7 6.9392 0.7169 8.6284 19 14 7.3901 -1.7367 9.8316 20 1 8.6564 -2.4666 9.5696 21 1 7.5200 -0.9564 11.0885 22 1 6.2764 -2.7097 9.9655 23 6 5.9961 0.3380 1.2814 24 6 6.0084 -0.5005 0.0012 25 7 2.3029 -1.0841 -0.0002 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 4.8080 -1.6912 -2.1405 30 1 5.7522 -2.9097 -1.2500 31 1 3.9741 -2.9875 -1.2502 32 1 3.9564 -2.9579 1.2743 33 1 5.7363 -2.9369 1.2295 34 1 4.9061 -2.0499 3.3874 35 1 3.9570 -0.8182 2.5213 36 1 6.9858 0.9356 3.5946 37 1 5.2388 0.7581 3.8862 38 1 6.5419 0.7274 6.2447 39 1 7.0528 1.0682 9.5254 40 1 6.8653 0.9956 1.2931 41 1 5.0866 0.9377 1.3140 42 1 6.9242 -1.0903 -0.0387 43 1 5.9609 0.1583 -0.8658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357791180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:50 Heat of formation + Delta-G solvation = 31.756149 kcal Electronic energy + Delta-G solvation = -26216.824718 eV Core-core repulsion = 22493.230455 eV Total energy + Delta-G solvation = -3723.594263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.67742 -39.67511 -37.96896 -36.20234 -35.06757 -33.79822 -32.19755 -31.24734 -30.88232 -29.30593 -29.12551 -26.21731 -24.61736 -23.98147 -23.38311 -22.65076 -21.38542 -19.63518 -19.18000 -18.20357 -17.84933 -17.19618 -16.02657 -15.64952 -15.17681 -14.82307 -14.60127 -14.53435 -14.13693 -13.86223 -13.78849 -13.64765 -13.60607 -13.28686 -13.01431 -12.51786 -12.36421 -12.26965 -12.16063 -11.88225 -11.63890 -11.49473 -11.44055 -11.26120 -11.12938 -11.04674 -10.94069 -10.49774 -10.44212 -10.36561 -10.20020 -9.88487 -9.44567 -8.42323 -7.96689 -7.84004 -6.40438 -3.81272 1.08333 2.14110 2.67855 3.20777 3.26470 3.30676 3.49380 3.90814 3.91291 4.00130 4.25136 4.50040 4.56687 4.59199 4.92263 5.02153 5.14892 5.20058 5.23797 5.27119 5.29522 5.38275 5.43952 5.50497 5.51691 5.61456 5.68236 5.73867 5.79719 5.82710 5.87675 5.94206 5.97937 6.00308 6.12128 6.27775 6.32483 6.45809 7.27478 7.40579 7.56111 8.07395 8.10110 8.63056 9.19108 9.55811 10.07511 10.77275 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.003241 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.741064 B = 8638.115470 C = 9081.197564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.393 5.393 4 O 0.077 5.923 5 C 0.205 3.795 6 C 0.029 3.971 7 C -0.137 4.137 8 C -0.098 4.098 9 C 0.052 3.948 10 N -0.511 5.511 11 C 0.046 3.954 12 C 0.444 3.556 13 O -0.577 6.577 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.045 3.955 24 C -0.109 4.109 25 N -0.483 5.483 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.012 0.988 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.095 0.905 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -0.047 -19.378 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.103 5.103 4 O 0.020 5.980 5 C -0.016 4.016 6 C 0.027 3.973 7 C -0.195 4.195 8 C -0.136 4.136 9 C -0.076 4.076 10 N -0.235 5.235 11 C -0.085 4.085 12 C 0.230 3.770 13 O -0.462 6.462 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.083 4.083 24 C -0.147 4.147 25 N -0.216 5.216 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.030 0.970 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.113 0.887 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.315 -0.517 -19.368 20.709 hybrid contribution -0.532 0.794 1.044 1.415 sum -7.847 0.277 -18.323 19.935 Atomic orbital electron populations 1.20113 0.83134 1.04403 1.04313 1.25899 1.00544 0.83692 1.00663 1.74610 0.89631 1.24099 1.21951 1.85332 1.22072 1.24923 1.65661 1.28880 0.96808 0.81881 0.93984 1.19549 0.85278 0.93413 0.99109 1.21873 1.03795 0.99173 0.94632 1.21751 1.04014 0.97071 0.90762 1.22291 0.89221 0.95752 1.00341 1.61547 1.40649 1.20402 1.00933 1.21840 1.01036 0.95620 0.90026 1.19725 0.84572 0.89168 0.83582 1.90473 1.55956 1.15996 1.83728 1.41866 1.62287 1.10135 1.05768 1.19649 1.45236 0.92330 0.85663 0.87936 1.25261 0.97460 0.96397 0.98812 1.69607 1.50033 1.11646 1.23073 0.85922 0.79182 0.79534 0.79608 1.19864 1.21007 1.19937 1.22246 1.01207 0.94508 0.90325 1.21767 0.97292 0.97918 0.97726 1.71839 0.99586 1.29221 1.20969 0.89354 0.89681 0.89129 0.92253 0.90166 0.91199 0.90445 0.88585 0.87156 0.97015 0.89154 0.93750 0.77507 0.91834 0.89960 0.94767 0.88659 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.16 2.14 8.22 -156.37 -1.28 0.85 16 3 N -0.39 -5.63 12.16 30.90 0.38 -5.25 16 4 O 0.08 1.06 8.83 18.10 0.16 1.22 16 5 C 0.20 2.66 5.07 -13.06 -0.07 2.59 16 6 C 0.03 0.32 0.75 -155.54 -0.12 0.20 16 7 C -0.14 -1.16 8.47 37.16 0.31 -0.84 16 8 C -0.10 -1.27 4.89 -26.58 -0.13 -1.40 16 9 C 0.05 0.86 4.90 -3.77 -0.02 0.84 16 10 N -0.51 -8.39 4.40 -236.03 -1.04 -9.43 16 11 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 12 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 13 O -0.58 -15.22 13.90 5.55 0.08 -15.14 16 14 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 15 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 19 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.05 0.58 5.21 -3.83 -0.02 0.56 16 24 C -0.11 -1.13 4.65 -26.65 -0.12 -1.25 16 25 N -0.48 -6.58 11.55 -9.87 -0.11 -6.69 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 2.22 5.78 -51.93 -0.30 1.92 16 35 H 0.01 0.20 7.31 -51.93 -0.38 -0.18 16 36 H 0.09 1.47 7.99 -51.93 -0.41 1.05 16 37 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 38 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.08 0.96 8.02 -51.93 -0.42 0.54 16 41 H 0.03 0.47 5.80 -51.93 -0.30 0.17 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -32.19 348.60 -7.35 -39.54 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.29 Total: 8.17 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.42 Total: 4.59 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.11 Total: -59.70 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.24 Total: -13.92 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.19 -7.35 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357791180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.297 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds