Wall clock time and date at job start Fri Apr 10 2020 17:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29947 * 126.28980 * 2 1 4 4 O 1.21293 * 110.25357 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81329 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.54947 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.52347 * 240.02454 * 6 5 4 8 8 C 1.53117 * 109.52200 * 119.90349 * 6 5 4 9 9 C 1.53176 * 109.20777 * 297.68524 * 8 6 5 10 10 N 1.46838 * 109.55536 * 300.86220 * 9 8 6 11 11 C 1.46904 * 111.00141 * 185.83586 * 10 9 8 12 12 C 1.50708 * 109.46779 * 65.78667 * 11 10 9 13 13 O 1.21294 * 120.00146 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99876 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99604 * 180.02562 * 14 12 11 16 16 H 1.07993 * 120.00367 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99586 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99925 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99809 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47246 * 59.99982 * 19 17 15 21 21 H 1.48503 * 109.46872 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47252 * 299.99307 * 19 17 15 23 23 C 1.46848 * 111.20097 * 61.74295 * 10 9 8 24 24 C 1.53040 * 109.52071 * 298.25301 * 23 10 9 25 25 N 1.31131 * 106.89535 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.47343 * 270.00060 * 1 2 3 27 27 H 1.09000 * 109.47482 * 30.00453 * 1 2 3 28 28 H 1.09009 * 109.47369 * 149.99898 * 1 2 3 29 29 H 1.09000 * 109.46946 * 60.00159 * 7 6 5 30 30 H 1.09000 * 109.47257 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.47267 * 300.00652 * 7 6 5 32 32 H 1.08998 * 109.50621 * 57.68657 * 8 6 5 33 33 H 1.08998 * 109.50864 * 177.80796 * 8 6 5 34 34 H 1.08997 * 109.44742 * 180.83199 * 9 8 6 35 35 H 1.09005 * 109.43428 * 60.87842 * 9 8 6 36 36 H 1.08998 * 109.47483 * 185.78583 * 11 10 9 37 37 H 1.08995 * 109.47288 * 305.79560 * 11 10 9 38 38 H 0.97001 * 119.99556 * 359.97438 * 14 12 11 39 39 H 0.97000 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46197 * 178.24438 * 23 10 9 41 41 H 1.08990 * 109.46438 * 58.27065 * 23 10 9 42 42 H 1.08998 * 109.50562 * 299.24306 * 24 23 10 43 43 H 1.08995 * 109.50463 * 179.11619 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4369 -0.0014 7 6 4.8357 -2.3197 -1.2504 8 6 4.8389 -2.3186 1.2498 9 6 4.8613 -1.4263 2.4946 10 7 6.0388 -0.5501 2.4501 11 6 6.1679 0.2218 3.6933 12 6 6.4542 -0.7149 4.8387 13 8 6.5424 -1.9080 4.6390 14 7 6.6121 -0.2268 6.0851 15 6 6.8730 -1.0788 7.1269 16 1 6.9516 -2.1411 6.9490 17 6 7.0353 -0.5757 8.4119 18 7 6.9392 0.7169 8.6284 19 14 7.3901 -1.7367 9.8316 20 1 8.6564 -2.4666 9.5696 21 1 7.5200 -0.9564 11.0885 22 1 6.2764 -2.7097 9.9655 23 6 5.9961 0.3380 1.2814 24 6 6.0084 -0.5005 0.0012 25 7 2.3029 -1.0841 -0.0002 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 4.8080 -1.6912 -2.1405 30 1 5.7522 -2.9097 -1.2500 31 1 3.9741 -2.9875 -1.2502 32 1 3.9564 -2.9579 1.2743 33 1 5.7363 -2.9369 1.2295 34 1 4.9061 -2.0499 3.3874 35 1 3.9570 -0.8182 2.5213 36 1 6.9858 0.9356 3.5946 37 1 5.2388 0.7581 3.8862 38 1 6.5419 0.7274 6.2447 39 1 7.0528 1.0682 9.5254 40 1 6.8653 0.9956 1.2931 41 1 5.0866 0.9377 1.3140 42 1 6.9242 -1.0903 -0.0387 43 1 5.9609 0.1583 -0.8658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357791180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:50 Heat of formation + Delta-G solvation = 7.413087 kcal Electronic energy + Delta-G solvation = -26217.880312 eV Core-core repulsion = 22493.230455 eV Total energy + Delta-G solvation = -3724.649857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.67099 -40.93532 -39.65056 -37.20702 -36.38392 -35.69030 -33.32181 -33.11665 -31.96590 -30.41186 -30.04911 -27.69949 -25.97910 -25.32835 -24.44796 -23.63774 -22.52654 -21.04202 -20.60912 -19.87746 -19.21489 -18.24484 -17.70647 -16.89531 -16.58347 -16.45953 -15.89971 -15.64447 -15.57314 -15.28880 -15.12835 -14.75339 -14.52163 -14.21483 -14.00359 -13.93318 -13.50563 -13.37719 -13.27417 -13.15312 -12.92101 -12.82924 -12.62979 -12.43451 -12.40262 -12.38420 -12.19124 -12.12255 -12.02963 -11.64499 -11.42058 -11.34093 -10.88711 -10.24292 -9.99774 -9.26433 -8.46110 -5.94893 0.09513 1.16981 1.39854 1.41454 1.52541 1.73236 2.04968 2.28190 2.59849 2.74510 3.03753 3.20336 3.36003 3.63158 3.65488 3.68289 4.03201 4.14014 4.17835 4.26379 4.40497 4.43210 4.46540 4.51029 4.51910 4.59809 4.64894 4.73005 4.74266 4.85458 4.88959 4.94909 5.00925 5.03929 5.07781 5.17286 5.28977 5.31901 5.41047 5.85874 6.04783 6.18866 6.60485 7.11598 7.12871 7.56258 8.11614 8.71249 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.003241 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.741064 B = 8638.115470 C = 9081.197564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.159 3.841 3 N -0.416 5.416 4 O 0.068 5.932 5 C 0.204 3.796 6 C 0.033 3.967 7 C -0.131 4.131 8 C -0.090 4.090 9 C 0.058 3.942 10 N -0.518 5.518 11 C 0.056 3.944 12 C 0.443 3.557 13 O -0.608 6.608 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.081 0.919 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.993 3.007 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.043 3.957 24 C -0.104 4.104 25 N -0.500 5.500 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.068 0.932 35 H -0.002 1.002 36 H 0.115 0.885 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.277 0.723 40 H 0.100 0.900 41 H 0.026 0.974 42 H 0.108 0.892 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 0.053 -20.808 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 N -0.129 5.129 4 O 0.014 5.986 5 C -0.016 4.016 6 C 0.031 3.969 7 C -0.189 4.189 8 C -0.128 4.128 9 C -0.070 4.070 10 N -0.243 5.243 11 C -0.075 4.075 12 C 0.230 3.770 13 O -0.494 6.494 14 N -0.213 5.213 15 C -0.462 4.462 16 H 0.099 0.901 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.817 3.183 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.084 4.084 24 C -0.142 4.142 25 N -0.234 5.234 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.016 0.984 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.228 0.772 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.045 0.955 42 H 0.127 0.873 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.060 -0.400 -20.821 21.989 hybrid contribution -0.650 0.760 1.462 1.772 sum -7.711 0.361 -19.359 20.841 Atomic orbital electron populations 1.20327 0.80566 1.05912 1.05178 1.26657 1.02153 0.83182 0.99372 1.74593 0.89976 1.24909 1.23377 1.85295 1.22049 1.25237 1.66023 1.29315 0.97354 0.81805 0.93134 1.19651 0.84831 0.93364 0.99101 1.21871 1.04590 0.98924 0.93508 1.21666 1.04221 0.96751 0.90188 1.22113 0.88857 0.95567 1.00446 1.61580 1.40414 1.21099 1.01232 1.21731 1.02171 0.94671 0.88948 1.20669 0.82572 0.89575 0.84194 1.90451 1.56772 1.17832 1.84372 1.41944 1.63150 1.09993 1.06192 1.19645 1.47386 0.91915 0.87229 0.90086 1.26054 0.96634 0.98024 1.00647 1.69676 1.49993 1.12798 1.23901 0.84986 0.78938 0.77675 0.76735 1.19495 1.19605 1.19751 1.22404 1.01622 0.94592 0.89804 1.21819 0.97323 0.98007 0.97059 1.71860 1.00094 1.29744 1.21713 0.88659 0.88182 0.87615 0.90911 0.88218 0.91741 0.90547 0.88071 0.91335 0.98367 0.86657 0.93128 0.77203 0.91350 0.88192 0.95544 0.87322 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.51 71.23 0.75 -0.23 16 2 C 0.16 3.99 8.22 138.46 1.14 5.13 16 3 N -0.42 -11.63 12.16 -60.34 -0.73 -12.37 16 4 O 0.07 1.82 8.83 74.83 0.66 2.48 16 5 C 0.20 5.05 5.07 88.38 0.45 5.50 16 6 C 0.03 0.66 0.75 -52.85 -0.04 0.62 16 7 C -0.13 -1.85 8.47 71.98 0.61 -1.24 16 8 C -0.09 -2.28 4.89 30.69 0.15 -2.13 16 9 C 0.06 1.97 4.90 86.37 0.42 2.39 16 10 N -0.52 -16.70 4.40 -900.65 -3.96 -20.66 16 11 C 0.06 2.02 5.45 85.56 0.47 2.49 16 12 C 0.44 21.32 7.46 87.66 0.65 21.97 16 13 O -0.61 -33.18 13.90 -3.07 -0.04 -33.22 16 14 N -0.58 -30.01 5.29 -306.98 -1.62 -31.64 16 15 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 16 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 17 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 18 N -0.92 -50.50 13.05 21.67 0.28 -50.22 16 19 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.04 1.02 5.21 86.33 0.45 1.48 16 24 C -0.10 -1.85 4.65 30.65 0.14 -1.71 16 25 N -0.50 -13.22 11.55 -303.21 -3.50 -16.73 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.89 5.78 -2.39 -0.01 2.88 16 35 H 0.00 -0.06 7.31 -2.38 -0.02 -0.08 16 36 H 0.12 3.59 7.99 -2.39 -0.02 3.57 16 37 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 38 H 0.39 19.73 7.90 -92.71 -0.73 19.00 16 39 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.10 2.04 8.02 -2.39 -0.02 2.02 16 41 H 0.03 0.69 5.80 -2.39 -0.01 0.67 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -71.15 348.60 -0.12 -71.27 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.30 Total: 30.05 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.47 Total: 15.77 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -9.54 Total: -131.61 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: 0.62 Total: -30.74 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.15 -0.12 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357791180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.687 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds